RNA–Protein interactions for RNA: ENST00000471246.1

UBXN4-207, Transcript of UBX domain protein 4, humanhuman

TSL 3

Gene UBXN4, Length 395 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-207ENST00000471246 PDZD11Q5EBL8 140 aa0.38□□□□□ -2.35
UBXN4-207ENST00000471246 ZNF678Q5SXM1 525 aa0.38□□□□□ -2.35
UBXN4-207ENST00000471246 LDLRAD2Q5SZI1 272 aa0.38□□□□□ -2.35
UBXN4-207ENST00000471246 TPTE2P1Q5T6R2 138 aa0.38□□□□□ -2.35
UBXN4-207ENST00000471246 PRAMEF5Q5TYX0 476 aa0.38□□□□□ -2.35
UBXN4-207ENST00000471246 C9orf135Q5VTT2 229 aa0.38□□□□□ -2.35
UBXN4-207ENST00000471246 PRAMEF6Q5VXH4 476 aa0.38□□□□□ -2.35
UBXN4-207ENST00000471246 FAM104BQ5XKR9 115 aa0.38□□□□□ -2.35
UBXN4-207ENST00000471246 TMEM107Q6UX40 140 aa0.38□□□□□ -2.35
UBXN4-207ENST00000471246 TCF24Q7RTU0 167 aa0.38□□□□□ -2.35
UBXN4-207ENST00000471246 NBPF5PQ86XG9 351 aaPredicted RBP0.38□□□□□ -2.35
UBXN4-207ENST00000471246 ORMDL3Q8N138 153 aa0.38□□□□□ -2.35
UBXN4-207ENST00000471246 DRAM1Q8N682 238 aa0.38□□□□□ -2.35
UBXN4-207ENST00000471246 SLC25A29Q8N8R3 303 aa0.38□□□□□ -2.35
UBXN4-207ENST00000471246 SNX31Q8N9S9 440 aa0.38□□□□□ -2.35
UBXN4-207ENST00000471246 BPIFCQ8NFQ6 507 aa0.38□□□□□ -2.35
UBXN4-207ENST00000471246 CAPSLQ8WWF8 208 aa0.38□□□□□ -2.35
UBXN4-207ENST00000471246 S100PBPQ96BU1 408 aa0.38□□□□□ -2.35
UBXN4-207ENST00000471246 HAUS1Q96CS2 278 aa0.38□□□□□ -2.35
UBXN4-207ENST00000471246 ECHDC3Q96DC8 303 aa0.38□□□□□ -2.35
UBXN4-207ENST00000471246 TBC1D31Q96DN5 1066 aa0.38□□□□□ -2.35
UBXN4-207ENST00000471246 TRIM44Q96DX7 344 aaPredicted RBP0.38□□□□□ -2.35
UBXN4-207ENST00000471246 BTN2A3PQ96KV6 586 aa0.38□□□□□ -2.35
UBXN4-207ENST00000471246 TSGA13Q96PP4 275 aa0.38□□□□□ -2.35
UBXN4-207ENST00000471246 RETNQ9HD89 108 aa0.38□□□□□ -2.35
UBXN4-207ENST00000471246 RRAGDQ9NQL2 400 aaPredicted RBP0.38□□□□□ -2.35
UBXN4-207ENST00000471246 DYRK4Q9NR20 520 aa0.38□□□□□ -2.35
UBXN4-207ENST00000471246 SLC39A1Q9NY26 324 aa0.38□□□□□ -2.35
UBXN4-207ENST00000471246 CCDC59Q9P031 241 aaKnown RBP0.38□□□□□ -2.35
UBXN4-207ENST00000471246 PISDQ9UG56 409 aa0.38□□□□□ -2.35
UBXN4-207ENST00000471246 SLC22A7Q9Y694 548 aa0.38□□□□□ -2.35
UBXN4-207ENST00000471246 MDN1Q9NU22 5596 aa0.38□□□□□ -2.35
UBXN4-207ENST00000471246 SDK1Q7Z5N4 2213 aa0.38□□□□□ -2.35
UBXN4-207ENST00000471246 GOLGB1Q14789 3259 aaKnown RBP0.38□□□□□ -2.35
UBXN4-207ENST00000471246 COL12A1Q99715 3063 aa0.38□□□□□ -2.35
UBXN4-207ENST00000471246 BRCA2P51587 3418 aa0.38□□□□□ -2.35
UBXN4-207ENST00000471246 WNK1Q9H4A3 2382 aa0.38□□□□□ -2.35
UBXN4-207ENST00000471246 DCHS1Q96JQ0 3298 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 PCF11O94913 1555 aaKnown RBP0.37□□□□□ -2.35
UBXN4-207ENST00000471246 USP47Q96K76 1375 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 MAP1AP78559 2803 aaPredicted RBP0.37□□□□□ -2.35
UBXN4-207ENST00000471246 IZUMO1RA6ND01 250 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 M0R1X1 148 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 SIRPB1O00241 398 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 CXCL11O14625 94 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 RAD1O60671 282 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 KCNK2O95069 426 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 LCA5LO95447 670 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 FGFR1OPO95684 399 aaKnown RBP0.37□□□□□ -2.35
UBXN4-207ENST00000471246 HPRT1P00492 218 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 SERPINA3P01011 423 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 MAS1P04201 325 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 CTSGP08311 255 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 PGA5P0DJD9 388 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 NCF2P19878 526 aaPredicted RBP0.37□□□□□ -2.35
UBXN4-207ENST00000471246 RAB4AP20338 218 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 OR1E1P30953 314 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 OTX1P32242 354 aaPredicted RBP0.37□□□□□ -2.35
UBXN4-207ENST00000471246 PFN2P35080 140 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 HNMTP50135 292 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 RAB7AP51149 207 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 ZNF83P51522 516 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 OR12D2P58182 307 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 FMODQ06828 376 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 NAB1Q13506 487 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 TRAM2Q15035 370 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 TSC22D1Q15714 1073 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 CD300LGQ6UXG3 332 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 TMPRSS11AQ6ZMR5 421 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 Q6ZSR6 202 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 TMPPEQ6ZT21 453 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 FA2HQ7L5A8 372 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 SLC16A14Q7RTX9 510 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 PAGE2Q7Z2X7 111 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 CMC1Q7Z7K0 106 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 CMTM1Q8IZ96 169 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 UBE2J2Q8N2K1 259 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 ZCCHC7Q8N3Z6 543 aaKnown RBP0.37□□□□□ -2.35
UBXN4-207ENST00000471246 EIF1ADQ8N9N8 165 aaKnown RBP0.37□□□□□ -2.35
UBXN4-207ENST00000471246 ZFP62Q8NB50 900 aaPredicted RBP0.37□□□□□ -2.35
UBXN4-207ENST00000471246 UBAC2Q8NBM4 344 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 OR5K2Q8NHB8 316 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 KCNG3Q8TAE7 436 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 YIPF5Q969M3 257 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 NT5C3BQ969T7 300 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 RERGQ96A58 199 aaPredicted RBP0.37□□□□□ -2.35
UBXN4-207ENST00000471246 ZBTB18Q99592 522 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 PDCD1LG2Q9BQ51 273 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 TMEM38AQ9H6F2 299 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 VSIRQ9H7M9 311 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 LRRC40Q9H9A6 602 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 HYPKQ9NX55 129 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 SLC2A8Q9NY64 477 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 MTCH1Q9NZJ7 389 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 ZNF337Q9Y3M9 751 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 HERC2O95714 4834 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 VPS13AQ96RL7 3174 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 HMCN2Q8NDA2 5059 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 GBF1Q92538 1859 aa0.37□□□□□ -2.35
UBXN4-207ENST00000471246 FHOD3Q2V2M9 1422 aa0.37□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms