RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 C16orf95Q9H693 158 aa12.66□□□□□ -0.38
SKA3-204ENST00000462482 MAGIXQ9H6Y5 334 aa12.66□□□□□ -0.38
SKA3-204ENST00000462482 CMC2Q9NRP2 79 aa12.66□□□□□ -0.38
SKA3-204ENST00000462482 ZNRD1Q9P1U0 126 aa12.66□□□□□ -0.38
SKA3-204ENST00000462482 U3KQV3 271 aa12.66□□□□□ -0.38
SKA3-204ENST00000462482 A0A1B0GW55 424 aa12.65□□□□□ -0.38
SKA3-204ENST00000462482 A0A1W2PRD5 423 aa12.65□□□□□ -0.38
SKA3-204ENST00000462482 A0A1W2PRF3 423 aa12.65□□□□□ -0.38
SKA3-204ENST00000462482 A0A1W2PRM7 423 aa12.65□□□□□ -0.38
SKA3-204ENST00000462482 MEIOCA2RUB1 952 aa12.65□□□□□ -0.38
SKA3-204ENST00000462482 DUX4L2P0CJ85 424 aa12.65□□□□□ -0.38
SKA3-204ENST00000462482 DUX4L3P0CJ86 424 aa12.65□□□□□ -0.38
SKA3-204ENST00000462482 DUX4L4P0CJ87 422 aa12.65□□□□□ -0.38
SKA3-204ENST00000462482 DUX4L5P0CJ88 424 aa12.65□□□□□ -0.38
SKA3-204ENST00000462482 DUX4L6P0CJ89 424 aa12.65□□□□□ -0.38
SKA3-204ENST00000462482 DUX4L7P0CJ90 424 aa12.65□□□□□ -0.38
SKA3-204ENST00000462482 NDUFB7P17568 137 aa12.65□□□□□ -0.38
SKA3-204ENST00000462482 MAGEA2P43356 314 aa12.65□□□□□ -0.38
SKA3-204ENST00000462482 TGM4P49221 684 aa12.65□□□□□ -0.38
SKA3-204ENST00000462482 PRDX4Q13162 271 aa12.65□□□□□ -0.38
SKA3-204ENST00000462482 OR2T5Q6IEZ7 315 aa12.65□□□□□ -0.38
SKA3-204ENST00000462482 DUX4L9Q6RFH8 374 aaPredicted RBP12.65□□□□□ -0.38
SKA3-204ENST00000462482 Q6ZSV7 163 aa12.65□□□□□ -0.38
SKA3-204ENST00000462482 OR5T2Q8NGG2 359 aa12.65□□□□□ -0.38
SKA3-204ENST00000462482 OR2T29Q8NH02 315 aa12.65□□□□□ -0.38
SKA3-204ENST00000462482 RNF170Q96K19 258 aa12.65□□□□□ -0.38
SKA3-204ENST00000462482 TLNRD1Q9H1K6 362 aa12.65□□□□□ -0.38
SKA3-204ENST00000462482 MUC13Q9H3R2 512 aa12.65□□□□□ -0.38
SKA3-204ENST00000462482 SNTG1Q9NSN8 517 aa12.65□□□□□ -0.38
SKA3-204ENST00000462482 DUX4Q9UBX2 424 aa12.65□□□□□ -0.38
SKA3-204ENST00000462482 SLC25A10Q9UBX3 287 aaPredicted RBP12.65□□□□□ -0.38
SKA3-204ENST00000462482 ZNF391Q9UJN7 358 aa12.65□□□□□ -0.38
SKA3-204ENST00000462482 ARL2BPQ9Y2Y0 163 aa12.65□□□□□ -0.38
SKA3-204ENST00000462482 ZNF850A8MQ14 1090 aa12.64□□□□□ -0.39
SKA3-204ENST00000462482 FCN3O75636 299 aa12.64□□□□□ -0.39
SKA3-204ENST00000462482 GLCEO94923 617 aa12.64□□□□□ -0.39
SKA3-204ENST00000462482 LYNP07948 512 aa12.64□□□□□ -0.39
SKA3-204ENST00000462482 OPRL1P41146 370 aa12.64□□□□□ -0.39
SKA3-204ENST00000462482 KRTAP10-3P60369 221 aa12.64□□□□□ -0.39
SKA3-204ENST00000462482 ELF3P78545 371 aaPredicted RBP12.64□□□□□ -0.39
SKA3-204ENST00000462482 ACSM1Q08AH1 577 aa12.64□□□□□ -0.39
SKA3-204ENST00000462482 PPP1R8Q12972 351 aaKnown RBP12.64□□□□□ -0.39
SKA3-204ENST00000462482 LINC01590Q5TEZ4 76 aa12.64□□□□□ -0.39
SKA3-204ENST00000462482 STUMQ69YW2 141 aa12.64□□□□□ -0.39
SKA3-204ENST00000462482 C1orf122Q6ZSJ8 110 aa12.64□□□□□ -0.39
SKA3-204ENST00000462482 DHFR2Q86XF0 187 aa12.64□□□□□ -0.39
SKA3-204ENST00000462482 ARHGAP24Q8N264 748 aa12.64□□□□□ -0.39
SKA3-204ENST00000462482 FGFRL1Q8N441 504 aa12.64□□□□□ -0.39
SKA3-204ENST00000462482 ZNF454Q8N9F8 522 aa12.64□□□□□ -0.39
SKA3-204ENST00000462482 OR10G2Q8NGC3 310 aa12.64□□□□□ -0.39
SKA3-204ENST00000462482 FAM110DQ8TAY7 271 aaPredicted RBP12.64□□□□□ -0.39
SKA3-204ENST00000462482 FAM81AQ8TBF8 368 aa12.64□□□□□ -0.39
SKA3-204ENST00000462482 THEM6Q8WUY1 208 aa12.64□□□□□ -0.39
SKA3-204ENST00000462482 PIGCQ92535 297 aa12.64□□□□□ -0.39
SKA3-204ENST00000462482 ITPKCQ96DU7 683 aa12.64□□□□□ -0.39
SKA3-204ENST00000462482 SEH1LQ96EE3 360 aa12.64□□□□□ -0.39
SKA3-204ENST00000462482 RAB3IPQ96QF0 476 aaPredicted RBP12.64□□□□□ -0.39
SKA3-204ENST00000462482 FAM234AQ9H0X4 552 aa12.64□□□□□ -0.39
SKA3-204ENST00000462482 OR51V1Q9H2C8 321 aa12.64□□□□□ -0.39
SKA3-204ENST00000462482 SEMA6AQ9H2E6 1030 aa12.64□□□□□ -0.39
SKA3-204ENST00000462482 METTL8Q9H825 291 aaKnown RBP12.64□□□□□ -0.39
SKA3-204ENST00000462482 MED20Q9H944 212 aa12.64□□□□□ -0.39
SKA3-204ENST00000462482 ARL8BQ9NVJ2 186 aa12.64□□□□□ -0.39
SKA3-204ENST00000462482 ZNF816-ZNF321PA0A0X1KG74 233 aa12.63□□□□□ -0.39
SKA3-204ENST00000462482 FAM183AA6NL82 134 aa12.63□□□□□ -0.39
SKA3-204ENST00000462482 PRR23D1E9PI22 279 aaPredicted RBP12.63□□□□□ -0.39
SKA3-204ENST00000462482 H0YAE9 185 aa12.63□□□□□ -0.39
SKA3-204ENST00000462482 RNASEK-C17orf49H0YIS7 233 aa12.63□□□□□ -0.39
SKA3-204ENST00000462482 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.63□□□□□ -0.39
SKA3-204ENST00000462482 M0R1W7 72 aa12.63□□□□□ -0.39
SKA3-204ENST00000462482 TSPAN9O75954 239 aa12.63□□□□□ -0.39
SKA3-204ENST00000462482 CST4P01036 141 aa12.63□□□□□ -0.39
SKA3-204ENST00000462482 PRR23D2P0DMB1 279 aaPredicted RBP12.63□□□□□ -0.39
SKA3-204ENST00000462482 ATP6V1B2P21281 511 aa12.63□□□□□ -0.39
SKA3-204ENST00000462482 UBE2E1P51965 193 aa12.63□□□□□ -0.39
SKA3-204ENST00000462482 GK3PQ14409 553 aa12.63□□□□□ -0.39
SKA3-204ENST00000462482 Q6ZTK2 550 aa12.63□□□□□ -0.39
SKA3-204ENST00000462482 PRSS45Q7RTY3 260 aa12.63□□□□□ -0.39
SKA3-204ENST00000462482 ZDHHC23Q8IYP9 409 aa12.63□□□□□ -0.39
SKA3-204ENST00000462482 C8orf46Q8TAG6 207 aa12.63□□□□□ -0.39
SKA3-204ENST00000462482 OR5P3Q8WZ94 311 aa12.63□□□□□ -0.39
SKA3-204ENST00000462482 RPL3LQ92901 407 aaKnown RBP12.63□□□□□ -0.39
SKA3-204ENST00000462482 TEX12Q9BXU0 123 aa12.63□□□□□ -0.39
SKA3-204ENST00000462482 NIPAL2Q9H841 368 aa12.63□□□□□ -0.39
SKA3-204ENST00000462482 NLKQ9UBE8 527 aa12.63□□□□□ -0.39
SKA3-204ENST00000462482 SF3B6Q9Y3B4 125 aaKnown RBP12.63□□□□□ -0.39
SKA3-204ENST00000462482 TRRAPQ9Y4A5 3859 aa12.63□□□□□ -0.39
SKA3-204ENST00000462482 AKR7A2O43488 359 aa12.62□□□□□ -0.39
SKA3-204ENST00000462482 CSF1P09603 554 aa12.62□□□□□ -0.39
SKA3-204ENST00000462482 GLRA1P23415 457 aa12.62□□□□□ -0.39
SKA3-204ENST00000462482 GABRA5P31644 462 aa12.62□□□□□ -0.39
SKA3-204ENST00000462482 SAA4P35542 130 aa12.62□□□□□ -0.39
SKA3-204ENST00000462482 GABRA2P47869 451 aa12.62□□□□□ -0.39
SKA3-204ENST00000462482 PRB3Q04118 309 aaPredicted RBP12.62□□□□□ -0.39
SKA3-204ENST00000462482 EGR3Q06889 387 aa12.62□□□□□ -0.39
SKA3-204ENST00000462482 KLRD1Q13241 179 aa12.62□□□□□ -0.39
SKA3-204ENST00000462482 KLHL12Q53G59 568 aa12.62□□□□□ -0.39
SKA3-204ENST00000462482 CD300LDQ6UXZ3 194 aa12.62□□□□□ -0.39
SKA3-204ENST00000462482 ZNF788Q6ZQV5 615 aa12.62□□□□□ -0.39
SKA3-204ENST00000462482 DTX3Q8N9I9 347 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 129.5 ms