RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 ABLIM2Q6H8Q1 611 aa13.19□□□□□ -0.3
LDLR-202ENST00000455727 SIGIRRQ6IA17 410 aa13.19□□□□□ -0.3
LDLR-202ENST00000455727 GSG1LQ6UXU4 331 aa13.19□□□□□ -0.3
LDLR-202ENST00000455727 RTN4RL2Q86UN3 420 aa13.19□□□□□ -0.3
LDLR-202ENST00000455727 TMEM105Q8N8V8 129 aa13.19□□□□□ -0.3
LDLR-202ENST00000455727 ZBTB44Q8NCP5 570 aa13.19□□□□□ -0.3
LDLR-202ENST00000455727 OR2V1Q8NHB1 315 aa13.19□□□□□ -0.3
LDLR-202ENST00000455727 PSMF1Q92530 271 aa13.19□□□□□ -0.3
LDLR-202ENST00000455727 SGK3Q96BR1 496 aa13.19□□□□□ -0.3
LDLR-202ENST00000455727 TM2D1Q9BX74 207 aa13.19□□□□□ -0.3
LDLR-202ENST00000455727 MED9Q9NWA0 146 aa13.19□□□□□ -0.3
LDLR-202ENST00000455727 PCSK5Q92824 1860 aa13.19□□□□□ -0.3
LDLR-202ENST00000455727 RTTNQ86VV8 2226 aa13.19□□□□□ -0.3
LDLR-202ENST00000455727 CCDC187A0A096LP49 1063 aa13.19□□□□□ -0.3
LDLR-202ENST00000455727 STMND1H3BQB6 276 aa13.19□□□□□ -0.3
LDLR-202ENST00000455727 DUS4LO95620 317 aaKnown RBP13.19□□□□□ -0.3
LDLR-202ENST00000455727 PDGFAP04085 211 aa13.19□□□□□ -0.3
LDLR-202ENST00000455727 DBHP09172 617 aa13.19□□□□□ -0.3
LDLR-202ENST00000455727 SLC25A4P12235 298 aa13.19□□□□□ -0.3
LDLR-202ENST00000455727 CNR1P21554 472 aa13.19□□□□□ -0.3
LDLR-202ENST00000455727 NTF4P34130 210 aa13.19□□□□□ -0.3
LDLR-202ENST00000455727 SCRN3Q0VDG4 424 aa13.19□□□□□ -0.3
LDLR-202ENST00000455727 SFRP5Q5T4F7 317 aa13.19□□□□□ -0.3
LDLR-202ENST00000455727 OR51T1Q8NGJ9 327 aa13.19□□□□□ -0.3
LDLR-202ENST00000455727 SCARB1Q8WTV0 552 aa13.19□□□□□ -0.3
LDLR-202ENST00000455727 CRLF2Q9HC73 371 aa13.19□□□□□ -0.3
LDLR-202ENST00000455727 LINC01387J3KSC0 135 aa13.18□□□□□ -0.3
LDLR-202ENST00000455727 CXCL13O43927 109 aa13.18□□□□□ -0.3
LDLR-202ENST00000455727 CA11O75493 328 aa13.18□□□□□ -0.3
LDLR-202ENST00000455727 RAD51DO75771 328 aa13.18□□□□□ -0.3
LDLR-202ENST00000455727 MGMTP16455 207 aa13.18□□□□□ -0.3
LDLR-202ENST00000455727 PPA1Q15181 289 aa13.18□□□□□ -0.3
LDLR-202ENST00000455727 KRTAP27-1Q3LI81 207 aa13.18□□□□□ -0.3
LDLR-202ENST00000455727 TCEAL6Q6IPX3 200 aa13.18□□□□□ -0.3
LDLR-202ENST00000455727 AAED1Q7RTV5 226 aa13.18□□□□□ -0.3
LDLR-202ENST00000455727 C1QL2Q7Z5L3 287 aa13.18□□□□□ -0.3
LDLR-202ENST00000455727 ZNF546Q86UE3 836 aa13.18□□□□□ -0.3
LDLR-202ENST00000455727 DTX1Q86Y01 620 aa13.18□□□□□ -0.3
LDLR-202ENST00000455727 OR10D3Q8NH80 312 aa13.18□□□□□ -0.3
LDLR-202ENST00000455727 SUN5Q8TC36 379 aa13.18□□□□□ -0.3
LDLR-202ENST00000455727 TCEAL3Q969E4 200 aa13.18□□□□□ -0.3
LDLR-202ENST00000455727 FN3KRPQ9HA64 309 aa13.18□□□□□ -0.3
LDLR-202ENST00000455727 DEPPQ9NTK1 212 aa13.18□□□□□ -0.3
LDLR-202ENST00000455727 LOC100509620A0A075B734 347 aa13.18□□□□□ -0.3
LDLR-202ENST00000455727 A0A0D9SG52 128 aa13.18□□□□□ -0.3
LDLR-202ENST00000455727 FCGR2AP12318 317 aa13.18□□□□□ -0.3
LDLR-202ENST00000455727 MPGP29372 298 aa13.18□□□□□ -0.3
LDLR-202ENST00000455727 SNAI3Q3KNW1 292 aa13.18□□□□□ -0.3
LDLR-202ENST00000455727 WIPI1Q5MNZ9 446 aaPredicted RBP13.18□□□□□ -0.3
LDLR-202ENST00000455727 RTL6Q6ICC9 239 aa13.18□□□□□ -0.3
LDLR-202ENST00000455727 SLC51BQ86UW2 128 aa13.18□□□□□ -0.3
LDLR-202ENST00000455727 OR1F12Q8NHA8 337 aa13.18□□□□□ -0.3
LDLR-202ENST00000455727 S100A13Q99584 98 aa13.18□□□□□ -0.3
LDLR-202ENST00000455727 ARRDC1-AS1Q9H2J1 176 aa13.18□□□□□ -0.3
LDLR-202ENST00000455727 COMMD9Q9P000 198 aa13.18□□□□□ -0.3
LDLR-202ENST00000455727 ZNF230Q9UIE0 474 aaPredicted RBP13.18□□□□□ -0.3
LDLR-202ENST00000455727 DMDP11532 3685 aa13.17□□□□□ -0.3
LDLR-202ENST00000455727 SERPINE3A8MV23 424 aa13.17□□□□□ -0.3
LDLR-202ENST00000455727 TRAPPC6AO75865 159 aa13.17□□□□□ -0.3
LDLR-202ENST00000455727 JMJD7P0C870 316 aa13.17□□□□□ -0.3
LDLR-202ENST00000455727 GFRA1P56159 465 aa13.17□□□□□ -0.3
LDLR-202ENST00000455727 CLDN15P56746 228 aa13.17□□□□□ -0.3
LDLR-202ENST00000455727 FOXO1Q12778 655 aa13.17□□□□□ -0.3
LDLR-202ENST00000455727 ARFRP1Q13795 201 aa13.17□□□□□ -0.3
LDLR-202ENST00000455727 ZNF345Q14585 488 aa13.17□□□□□ -0.3
LDLR-202ENST00000455727 AANATQ16613 207 aa13.17□□□□□ -0.3
LDLR-202ENST00000455727 JMJD6Q6NYC1 403 aaPredicted RBP13.17□□□□□ -0.3
LDLR-202ENST00000455727 ADAD2Q8NCV1 583 aaKnown RBP13.17□□□□□ -0.3
LDLR-202ENST00000455727 TMEM185AQ8NFB2 350 aa13.17□□□□□ -0.3
LDLR-202ENST00000455727 SEMA6DQ8NFY4 1073 aa13.17□□□□□ -0.3
LDLR-202ENST00000455727 ST8SIA4Q92187 359 aa13.17□□□□□ -0.3
LDLR-202ENST00000455727 CPNE4Q96A23 557 aaPredicted RBP13.17□□□□□ -0.3
LDLR-202ENST00000455727 SPSB1Q96BD6 273 aa13.17□□□□□ -0.3
LDLR-202ENST00000455727 ZNF775Q96BV0 537 aaPredicted RBP13.17□□□□□ -0.3
LDLR-202ENST00000455727 SCGB3A2Q96PL1 93 aa13.17□□□□□ -0.3
LDLR-202ENST00000455727 ZNF391Q9UJN7 358 aa13.17□□□□□ -0.3
LDLR-202ENST00000455727 GPR132Q9UNW8 380 aa13.17□□□□□ -0.3
LDLR-202ENST00000455727 OR6C6A6NF89 314 aa13.17□□□□□ -0.3
LDLR-202ENST00000455727 DBX1A6NMT0 343 aa13.17□□□□□ -0.3
LDLR-202ENST00000455727 CYTIPO60759 359 aa13.17□□□□□ -0.3
LDLR-202ENST00000455727 POU3F2P20265 443 aaPredicted RBP13.17□□□□□ -0.3
LDLR-202ENST00000455727 CPT2P23786 658 aa13.17□□□□□ -0.3
LDLR-202ENST00000455727 TMEM128Q5BJH2 165 aa13.17□□□□□ -0.3
LDLR-202ENST00000455727 C11orf87Q6NUJ2 197 aa13.17□□□□□ -0.3
LDLR-202ENST00000455727 SULF2Q8IWU5 870 aa13.17□□□□□ -0.3
LDLR-202ENST00000455727 OR5D18Q8NGL1 313 aa13.17□□□□□ -0.3
LDLR-202ENST00000455727 MARCH1Q8TCQ1 289 aa13.17□□□□□ -0.3
LDLR-202ENST00000455727 PCNPQ8WW12 178 aaKnown RBP13.17□□□□□ -0.3
LDLR-202ENST00000455727 ROBO4Q8WZ75 1007 aa13.17□□□□□ -0.3
LDLR-202ENST00000455727 PDCD10Q9BUL8 212 aa13.17□□□□□ -0.3
LDLR-202ENST00000455727 BOKQ9UMX3 212 aaPredicted RBP13.17□□□□□ -0.3
LDLR-202ENST00000455727 PMS2P1A4D2B8 440 aa13.16□□□□□ -0.3
LDLR-202ENST00000455727 C9orf172C9J069 976 aa13.16□□□□□ -0.3
LDLR-202ENST00000455727 LIPCP11150 499 aa13.16□□□□□ -0.3
LDLR-202ENST00000455727 BLVRBP30043 206 aaPredicted RBP13.16□□□□□ -0.3
LDLR-202ENST00000455727 STARP49675 285 aa13.16□□□□□ -0.3
LDLR-202ENST00000455727 TAS2R46P59540 309 aa13.16□□□□□ -0.3
LDLR-202ENST00000455727 TMEM17Q86X19 198 aa13.16□□□□□ -0.3
LDLR-202ENST00000455727 OR5H2Q8NGV7 314 aa13.16□□□□□ -0.3
LDLR-202ENST00000455727 NPRL2Q8WTW4 380 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms