RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 LYPD4Q6UWN0 246 aa10.9□□□□□ -0.66
HMGB3-204ENST00000448905 C16orf89Q6UX73 402 aa10.9□□□□□ -0.66
HMGB3-204ENST00000448905 C1QL4Q86Z23 238 aa10.9□□□□□ -0.66
HMGB3-204ENST00000448905 PGAM4Q8N0Y7 254 aa10.9□□□□□ -0.66
HMGB3-204ENST00000448905 AQP11Q8NBQ7 271 aa10.9□□□□□ -0.66
HMGB3-204ENST00000448905 OR51G2Q8NGK0 314 aa10.9□□□□□ -0.66
HMGB3-204ENST00000448905 RNF133Q8WVZ7 376 aa10.9□□□□□ -0.66
HMGB3-204ENST00000448905 RAB3IPQ96QF0 476 aaPredicted RBP10.9□□□□□ -0.66
HMGB3-204ENST00000448905 ABHD6Q9BV23 337 aa10.9□□□□□ -0.66
HMGB3-204ENST00000448905 NMNAT2Q9BZQ4 307 aa10.9□□□□□ -0.66
HMGB3-204ENST00000448905 TLNRD1Q9H1K6 362 aa10.9□□□□□ -0.66
HMGB3-204ENST00000448905 BRD7Q9NPI1 651 aa10.9□□□□□ -0.66
HMGB3-204ENST00000448905 MED4Q9NPJ6 270 aa10.9□□□□□ -0.66
HMGB3-204ENST00000448905 DNAJC27Q9NZQ0 273 aa10.9□□□□□ -0.66
HMGB3-204ENST00000448905 LYVE1Q9Y5Y7 322 aa10.9□□□□□ -0.66
HMGB3-204ENST00000448905 VWFP04275 2813 aa10.9□□□□□ -0.67
HMGB3-204ENST00000448905 hCG_38984A0A1B0GV85 526 aa10.89□□□□□ -0.67
HMGB3-204ENST00000448905 hCG_1809904A0A1W2PP81 198 aa10.89□□□□□ -0.67
HMGB3-204ENST00000448905 A0A1W2PPE2 198 aa10.89□□□□□ -0.67
HMGB3-204ENST00000448905 A0A1W2PR64 198 aa10.89□□□□□ -0.67
HMGB3-204ENST00000448905 A0A1W2PRV1 198 aa10.89□□□□□ -0.67
HMGB3-204ENST00000448905 FCN3O75636 299 aa10.89□□□□□ -0.67
HMGB3-204ENST00000448905 GLCEO94923 617 aa10.89□□□□□ -0.67
HMGB3-204ENST00000448905 TSPAN15O95858 294 aa10.89□□□□□ -0.67
HMGB3-204ENST00000448905 CST4P01036 141 aa10.89□□□□□ -0.67
HMGB3-204ENST00000448905 ACAA1P09110 424 aaPredicted RBP10.89□□□□□ -0.67
HMGB3-204ENST00000448905 PAICSP22234 425 aaKnown RBP10.89□□□□□ -0.67
HMGB3-204ENST00000448905 KIR2DS4P43632 304 aa10.89□□□□□ -0.67
HMGB3-204ENST00000448905 GABRA2P47869 451 aa10.89□□□□□ -0.67
HMGB3-204ENST00000448905 MNAT1P51948 309 aa10.89□□□□□ -0.67
HMGB3-204ENST00000448905 CAV3P56539 151 aa10.89□□□□□ -0.67
HMGB3-204ENST00000448905 ZNF121P58317 390 aaPredicted RBP10.89□□□□□ -0.67
HMGB3-204ENST00000448905 MXRA7P84157 204 aa10.89□□□□□ -0.67
HMGB3-204ENST00000448905 PRDX4Q13162 271 aa10.89□□□□□ -0.67
HMGB3-204ENST00000448905 STUMQ69YW2 141 aa10.89□□□□□ -0.67
HMGB3-204ENST00000448905 ZNF788Q6ZQV5 615 aa10.89□□□□□ -0.67
HMGB3-204ENST00000448905 WDR86Q86TI4 376 aa10.89□□□□□ -0.67
HMGB3-204ENST00000448905 ERI1Q8IV48 349 aaKnown RBP10.89□□□□□ -0.67
HMGB3-204ENST00000448905 Q8N7P7 452 aa10.89□□□□□ -0.67
HMGB3-204ENST00000448905 BEND2Q8NDZ0 799 aa10.89□□□□□ -0.67
HMGB3-204ENST00000448905 OR9Q2Q8NGE9 314 aa10.89□□□□□ -0.67
HMGB3-204ENST00000448905 OR4C13Q8NGP0 309 aa10.89□□□□□ -0.67
HMGB3-204ENST00000448905 OR6N2Q8NGY6 317 aa10.89□□□□□ -0.67
HMGB3-204ENST00000448905 ZNF671Q8TAW3 534 aa10.89□□□□□ -0.67
HMGB3-204ENST00000448905 OR5P3Q8WZ94 311 aa10.89□□□□□ -0.67
HMGB3-204ENST00000448905 PIGCQ92535 297 aa10.89□□□□□ -0.67
HMGB3-204ENST00000448905 ITFG2Q969R8 447 aa10.89□□□□□ -0.67
HMGB3-204ENST00000448905 ITPKCQ96DU7 683 aa10.89□□□□□ -0.67
HMGB3-204ENST00000448905 SEH1LQ96EE3 360 aa10.89□□□□□ -0.67
HMGB3-204ENST00000448905 DUS3LQ96G46 650 aaKnown RBP10.89□□□□□ -0.67
HMGB3-204ENST00000448905 BTBD10Q9BSF8 475 aa10.89□□□□□ -0.67
HMGB3-204ENST00000448905 SEMA6AQ9H2E6 1030 aa10.89□□□□□ -0.67
HMGB3-204ENST00000448905 HEXA-AS1Q9H8Q6 139 aa10.89□□□□□ -0.67
HMGB3-204ENST00000448905 SNTG1Q9NSN8 517 aa10.89□□□□□ -0.67
HMGB3-204ENST00000448905 A0A1B0GW55 424 aa10.88□□□□□ -0.67
HMGB3-204ENST00000448905 OR2AT4A6NND4 320 aa10.88□□□□□ -0.67
HMGB3-204ENST00000448905 ZNF850A8MQ14 1090 aa10.88□□□□□ -0.67
HMGB3-204ENST00000448905 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.88□□□□□ -0.67
HMGB3-204ENST00000448905 SIGLEC5O15389 551 aa10.88□□□□□ -0.67
HMGB3-204ENST00000448905 DUX4L2P0CJ85 424 aa10.88□□□□□ -0.67
HMGB3-204ENST00000448905 DUX4L3P0CJ86 424 aa10.88□□□□□ -0.67
HMGB3-204ENST00000448905 DUX4L4P0CJ87 422 aa10.88□□□□□ -0.67
HMGB3-204ENST00000448905 DUX4L5P0CJ88 424 aa10.88□□□□□ -0.67
HMGB3-204ENST00000448905 DUX4L6P0CJ89 424 aa10.88□□□□□ -0.67
HMGB3-204ENST00000448905 DUX4L7P0CJ90 424 aa10.88□□□□□ -0.67
HMGB3-204ENST00000448905 MICAQ29983 383 aa10.88□□□□□ -0.67
HMGB3-204ENST00000448905 FAM76BQ5HYJ3 339 aa10.88□□□□□ -0.67
HMGB3-204ENST00000448905 ZNF770Q6IQ21 691 aaPredicted RBP10.88□□□□□ -0.67
HMGB3-204ENST00000448905 DUX4L9Q6RFH8 374 aaPredicted RBP10.88□□□□□ -0.67
HMGB3-204ENST00000448905 FGFRL1Q8N441 504 aa10.88□□□□□ -0.67
HMGB3-204ENST00000448905 ZNF454Q8N9F8 522 aa10.88□□□□□ -0.67
HMGB3-204ENST00000448905 OR8D4Q8NGM9 314 aa10.88□□□□□ -0.67
HMGB3-204ENST00000448905 OR2T6Q8NHC8 308 aa10.88□□□□□ -0.67
HMGB3-204ENST00000448905 THEM6Q8WUY1 208 aa10.88□□□□□ -0.67
HMGB3-204ENST00000448905 RPL3LQ92901 407 aaKnown RBP10.88□□□□□ -0.67
HMGB3-204ENST00000448905 TNFRSF14Q92956 283 aa10.88□□□□□ -0.67
HMGB3-204ENST00000448905 CLPTM1LQ96KA5 538 aa10.88□□□□□ -0.67
HMGB3-204ENST00000448905 SSX3Q99909 188 aa10.88□□□□□ -0.67
HMGB3-204ENST00000448905 NIPAL2Q9H841 368 aa10.88□□□□□ -0.67
HMGB3-204ENST00000448905 REEP1Q9H902 201 aa10.88□□□□□ -0.67
HMGB3-204ENST00000448905 CMC2Q9NRP2 79 aa10.88□□□□□ -0.67
HMGB3-204ENST00000448905 NLKQ9UBE8 527 aa10.88□□□□□ -0.67
HMGB3-204ENST00000448905 DUX4Q9UBX2 424 aa10.88□□□□□ -0.67
HMGB3-204ENST00000448905 MAB21L2Q9Y586 359 aa10.88□□□□□ -0.67
HMGB3-204ENST00000448905 TRBV23-1A0A0A0MS06 115 aa10.87□□□□□ -0.67
HMGB3-204ENST00000448905 H3BN98 237 aa10.87□□□□□ -0.67
HMGB3-204ENST00000448905 H3BUX3 64 aa10.87□□□□□ -0.67
HMGB3-204ENST00000448905 AKR7A2O43488 359 aa10.87□□□□□ -0.67
HMGB3-204ENST00000448905 OPN1MWP04001 364 aa10.87□□□□□ -0.67
HMGB3-204ENST00000448905 LYNP07948 512 aa10.87□□□□□ -0.67
HMGB3-204ENST00000448905 OPN1MW2P0DN77 364 aa10.87□□□□□ -0.67
HMGB3-204ENST00000448905 OPN1MW3P0DN78 364 aa10.87□□□□□ -0.67
HMGB3-204ENST00000448905 CLUP10909 449 aa10.87□□□□□ -0.67
HMGB3-204ENST00000448905 PSKH1P11801 424 aa10.87□□□□□ -0.67
HMGB3-204ENST00000448905 ANOS1P23352 680 aa10.87□□□□□ -0.67
HMGB3-204ENST00000448905 GLRA1P23415 457 aa10.87□□□□□ -0.67
HMGB3-204ENST00000448905 OPRL1P41146 370 aa10.87□□□□□ -0.67
HMGB3-204ENST00000448905 MAP2K3P46734 347 aa10.87□□□□□ -0.67
HMGB3-204ENST00000448905 LGALS4P56470 323 aa10.87□□□□□ -0.67
HMGB3-204ENST00000448905 ELF3P78545 371 aaPredicted RBP10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms