RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 RBM45Q8IUH3 476 aaKnown RBP5.38□□□□□ -1.55
USP40-202ENST00000409945 OFCC1Q8IZS5 231 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 SVOPLQ8N434 492 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 OR4F15Q8NGB8 312 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 OR6X1Q8NH79 312 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 SPSB1Q96BD6 273 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 BPIFA2Q96DR5 249 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 SLC25A44Q96H78 314 aaPredicted RBP5.38□□□□□ -1.55
USP40-202ENST00000409945 SLC38A2Q96QD8 506 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 OR2M2Q96R28 347 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 SEPHS2Q99611 448 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 INIPQ9NRY2 104 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 SMPD3Q9NY59 655 aaPredicted RBP5.38□□□□□ -1.55
USP40-202ENST00000409945 AKAP6Q13023 2319 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 OTOGQ6ZRI0 2925 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 IGHV4OR15-8A0A075B7B6 117 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 EFCAB9A8MZ26 197 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 H0YAE9 185 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 XKRYO14609 159 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 EI24O14681 340 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 TRAF3IP2O43734 574 aaPredicted RBP5.38□□□□□ -1.55
USP40-202ENST00000409945 UPK3AO75631 287 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 ZNF432O94892 652 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 UBL3O95164 117 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 HPRP00739 348 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 H1F0P07305 194 aaKnown RBP5.38□□□□□ -1.55
USP40-202ENST00000409945 ASAH2BP0C7U1 165 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 IFI30P13284 250 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 PTNP21246 168 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 RPL4P36578 427 aaKnown RBP5.38□□□□□ -1.55
USP40-202ENST00000409945 CAPGP40121 348 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 ATP5J2P56134 94 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 GALK2Q01415 458 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 ZNF415Q09FC8 603 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 SLC36A3Q495N2 470 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 KCTD21Q4G0X4 260 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 HIKESHIQ53FT3 197 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 FGD3Q5JSP0 725 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 TMEM53Q6P2H8 277 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 FAM122CQ6P4D5 195 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 UNQ6126/PRO20091Q6UXV3 157 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 OAFQ86UD1 273 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 COMTD1Q86VU5 262 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 C20orf196Q8IYI0 205 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 DHRSXQ8N5I4 330 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 KBTBD8Q8NFY9 601 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 ACOT11Q8WXI4 607 aaPredicted RBP5.38□□□□□ -1.55
USP40-202ENST00000409945 DGCR14Q96DF8 476 aaKnown RBP5.38□□□□□ -1.55
USP40-202ENST00000409945 RBP7Q96R05 134 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 DHRS9Q9BPW9 319 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 ZNF426Q9BUY5 554 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 EMC6Q9BV81 110 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 OSBPL10Q9BXB5 764 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 C1QTNF6Q9BXI9 259 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 YTHDF1Q9BYJ9 559 aaKnown RBP5.38□□□□□ -1.55
USP40-202ENST00000409945 C1orf198Q9H425 327 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 DCAF13Q9NV06 445 aaKnown RBP5.38□□□□□ -1.55
USP40-202ENST00000409945 MED29Q9NX70 200 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 GLTPQ9NZD2 209 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 B3GAT1Q9P2W7 334 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 SEC14L4Q9UDX3 406 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 ENPP4Q9Y6X5 453 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 A0A0U1RQK1 487 aa5.37□□□□□ -1.55
USP40-202ENST00000409945 A0A1W2PPQ1 181 aa5.37□□□□□ -1.55
USP40-202ENST00000409945 A0A1W2PR80 420 aa5.37□□□□□ -1.55
USP40-202ENST00000409945 ZNF320A2RRD8 509 aa5.37□□□□□ -1.55
USP40-202ENST00000409945 DPRXA6NFQ7 191 aa5.37□□□□□ -1.55
USP40-202ENST00000409945 A6NIZ1 184 aa5.37□□□□□ -1.55
USP40-202ENST00000409945 OR8G3PP0DMU2 310 aa5.37□□□□□ -1.55
USP40-202ENST00000409945 CD79AP11912 226 aa5.37□□□□□ -1.55
USP40-202ENST00000409945 EDNRAP25101 427 aa5.37□□□□□ -1.55
USP40-202ENST00000409945 RAP1BP61224 184 aa5.37□□□□□ -1.55
USP40-202ENST00000409945 RPS23P62266 143 aaKnown RBP5.37□□□□□ -1.55
USP40-202ENST00000409945 SNRPD2P62316 118 aaKnown RBP5.37□□□□□ -1.55
USP40-202ENST00000409945 RAP1AP62834 184 aa5.37□□□□□ -1.55
USP40-202ENST00000409945 CD47Q08722 323 aa5.37□□□□□ -1.55
USP40-202ENST00000409945 RAB35Q15286 201 aa5.37□□□□□ -1.55
USP40-202ENST00000409945 GSG1Q2KHT4 349 aa5.37□□□□□ -1.55
USP40-202ENST00000409945 SLC36A2Q495M3 483 aa5.37□□□□□ -1.55
USP40-202ENST00000409945 MBOAT2Q6ZWT7 520 aa5.37□□□□□ -1.55
USP40-202ENST00000409945 VTCN1Q7Z7D3 282 aa5.37□□□□□ -1.55
USP40-202ENST00000409945 NKAIN4Q8IVV8 208 aa5.37□□□□□ -1.55
USP40-202ENST00000409945 TMEM123Q8N131 208 aa5.37□□□□□ -1.55
USP40-202ENST00000409945 MUC15Q8N387 334 aa5.37□□□□□ -1.55
USP40-202ENST00000409945 OR4D11Q8NGI4 311 aa5.37□□□□□ -1.55
USP40-202ENST00000409945 LIPHQ8WWY8 451 aa5.37□□□□□ -1.55
USP40-202ENST00000409945 BCL2L2Q92843 193 aaPredicted RBP5.37□□□□□ -1.55
USP40-202ENST00000409945 C1QTNF4Q9BXJ3 329 aa5.37□□□□□ -1.55
USP40-202ENST00000409945 HIPK2Q9H2X6 1198 aa5.37□□□□□ -1.55
USP40-202ENST00000409945 RNF121Q9H920 327 aa5.37□□□□□ -1.55
USP40-202ENST00000409945 CBLN4Q9NTU7 201 aa5.37□□□□□ -1.55
USP40-202ENST00000409945 FKBP7Q9Y680 259 aa5.37□□□□□ -1.55
USP40-202ENST00000409945 COMMD3-BMI1R4GMX3 469 aa5.37□□□□□ -1.55
USP40-202ENST00000409945 CSMD1Q96PZ7 3565 aa5.37□□□□□ -1.55
USP40-202ENST00000409945 DSCAMO60469 2012 aa5.37□□□□□ -1.55
USP40-202ENST00000409945 A0A087WXM4 84 aa5.36□□□□□ -1.55
USP40-202ENST00000409945 LRRN3E7EW58 273 aa5.36□□□□□ -1.55
USP40-202ENST00000409945 DLGAP1O14490 977 aa5.36□□□□□ -1.55
USP40-202ENST00000409945 CST1P01037 141 aa5.36□□□□□ -1.55
USP40-202ENST00000409945 FABP3P05413 133 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms