RNA–Protein interactions for RNA: ENST00000404210.5

LINC00339-201, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 1,189 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-201ENST00000404210 TENM4Q6N022 2769 aa10.48□□□□□ -0.73
LINC00339-201ENST00000404210 USP9YO00507 2555 aaPredicted RBP10.48□□□□□ -0.73
LINC00339-201ENST00000404210 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.48□□□□□ -0.73
LINC00339-201ENST00000404210 A0A1W2PPK0 400 aa10.48□□□□□ -0.73
LINC00339-201ENST00000404210 ZSCAN5BA6NJL1 495 aa10.48□□□□□ -0.73
LINC00339-201ENST00000404210 ANXA2P2A6NMY6 339 aa10.48□□□□□ -0.73
LINC00339-201ENST00000404210 H0YL77 283 aa10.48□□□□□ -0.73
LINC00339-201ENST00000404210 OVOL3O00110 214 aa10.48□□□□□ -0.73
LINC00339-201ENST00000404210 MLNRO43193 412 aa10.48□□□□□ -0.73
LINC00339-201ENST00000404210 ARL6IP5O75915 188 aa10.48□□□□□ -0.73
LINC00339-201ENST00000404210 IGHV1-46P01743 117 aa10.48□□□□□ -0.73
LINC00339-201ENST00000404210 ALDOBP05062 364 aa10.48□□□□□ -0.73
LINC00339-201ENST00000404210 NAT2P11245 290 aa10.48□□□□□ -0.73
LINC00339-201ENST00000404210 SRMP19623 302 aa10.48□□□□□ -0.73
LINC00339-201ENST00000404210 FSTP19883 344 aa10.48□□□□□ -0.73
LINC00339-201ENST00000404210 INSL4Q14641 139 aa10.48□□□□□ -0.73
LINC00339-201ENST00000404210 UBE2V2Q15819 145 aa10.48□□□□□ -0.73
LINC00339-201ENST00000404210 HSD17B12Q53GQ0 312 aa10.48□□□□□ -0.73
LINC00339-201ENST00000404210 ZDHHC23Q8IYP9 409 aa10.48□□□□□ -0.73
LINC00339-201ENST00000404210 OR2Z1Q8NG97 314 aa10.48□□□□□ -0.73
LINC00339-201ENST00000404210 UBASH3BQ8TF42 649 aa10.48□□□□□ -0.73
LINC00339-201ENST00000404210 OR5P3Q8WZ94 311 aa10.48□□□□□ -0.73
LINC00339-201ENST00000404210 ITPKCQ96DU7 683 aa10.48□□□□□ -0.73
LINC00339-201ENST00000404210 MICU1Q9BPX6 476 aa10.48□□□□□ -0.73
LINC00339-201ENST00000404210 TMUB1Q9BVT8 246 aa10.48□□□□□ -0.73
LINC00339-201ENST00000404210 CXXC4Q9H2H0 198 aa10.48□□□□□ -0.73
LINC00339-201ENST00000404210 PPIL3Q9H2H8 161 aaKnown RBP10.48□□□□□ -0.73
LINC00339-201ENST00000404210 PPP1R3EQ9H7J1 279 aa10.48□□□□□ -0.73
LINC00339-201ENST00000404210 DYNLRB1Q9NP97 96 aa10.48□□□□□ -0.73
LINC00339-201ENST00000404210 EXOSC4Q9NPD3 245 aaKnown RBP10.48□□□□□ -0.73
LINC00339-201ENST00000404210 GPR173Q9NS66 373 aa10.48□□□□□ -0.73
LINC00339-201ENST00000404210 TXNL4BQ9NX01 149 aaKnown RBP10.48□□□□□ -0.73
LINC00339-201ENST00000404210 CKLFQ9UBR5 152 aa10.48□□□□□ -0.73
LINC00339-201ENST00000404210 IL19Q9UHD0 177 aa10.48□□□□□ -0.73
LINC00339-201ENST00000404210 EDARQ9UNE0 448 aa10.48□□□□□ -0.73
LINC00339-201ENST00000404210 SLC7A11Q9UPY5 501 aa10.48□□□□□ -0.73
LINC00339-201ENST00000404210 FASNP49327 2511 aaKnown RBP10.48□□□□□ -0.73
LINC00339-201ENST00000404210 IGKV1-9A0A0C4DH69 117 aa10.47□□□□□ -0.73
LINC00339-201ENST00000404210 MEGF11A6BM72 1044 aa10.47□□□□□ -0.73
LINC00339-201ENST00000404210 SPRY3O43610 288 aa10.47□□□□□ -0.73
LINC00339-201ENST00000404210 SULT1B1O43704 296 aa10.47□□□□□ -0.73
LINC00339-201ENST00000404210 AIREO43918 545 aa10.47□□□□□ -0.73
LINC00339-201ENST00000404210 CD55P08174 381 aa10.47□□□□□ -0.73
LINC00339-201ENST00000404210 PRF1P14222 555 aa10.47□□□□□ -0.73
LINC00339-201ENST00000404210 RAB3AP20336 220 aa10.47□□□□□ -0.73
LINC00339-201ENST00000404210 PRKACBP22694 351 aa10.47□□□□□ -0.73
LINC00339-201ENST00000404210 TNFSF4P23510 183 aa10.47□□□□□ -0.73
LINC00339-201ENST00000404210 CD200P41217 278 aa10.47□□□□□ -0.73
LINC00339-201ENST00000404210 FUT6P51993 359 aa10.47□□□□□ -0.73
LINC00339-201ENST00000404210 CNN3Q15417 329 aaKnown RBP10.47□□□□□ -0.73
LINC00339-201ENST00000404210 PCGF3Q3KNV8 242 aa10.47□□□□□ -0.73
LINC00339-201ENST00000404210 FAM76BQ5HYJ3 339 aa10.47□□□□□ -0.73
LINC00339-201ENST00000404210 FAM209AQ5JX71 171 aa10.47□□□□□ -0.73
LINC00339-201ENST00000404210 PLCXD3Q63HM9 321 aa10.47□□□□□ -0.73
LINC00339-201ENST00000404210 ASPHD2Q6ICH7 369 aa10.47□□□□□ -0.73
LINC00339-201ENST00000404210 SATL1Q86VE3 508 aa10.47□□□□□ -0.73
LINC00339-201ENST00000404210 CELF2-AS1Q8N7Q2 184 aa10.47□□□□□ -0.73
LINC00339-201ENST00000404210 DNAAF1Q8NEP3 725 aa10.47□□□□□ -0.73
LINC00339-201ENST00000404210 OR1M1Q8NGA1 313 aa10.47□□□□□ -0.73
LINC00339-201ENST00000404210 OR8S1Q8NH09 359 aa10.47□□□□□ -0.73
LINC00339-201ENST00000404210 GTF3AQ92664 365 aaKnown RBP10.47□□□□□ -0.73
LINC00339-201ENST00000404210 ORAI1Q96D31 301 aa10.47□□□□□ -0.73
LINC00339-201ENST00000404210 TRMT61AQ96FX7 289 aaKnown RBP10.47□□□□□ -0.73
LINC00339-201ENST00000404210 POM121Q96HA1 1249 aa10.47□□□□□ -0.73
LINC00339-201ENST00000404210 RNF170Q96K19 258 aa10.47□□□□□ -0.73
LINC00339-201ENST00000404210 CHCHD6Q9BRQ6 235 aa10.47□□□□□ -0.73
LINC00339-201ENST00000404210 CACNG6Q9BXT2 260 aa10.47□□□□□ -0.73
LINC00339-201ENST00000404210 RAB1BQ9H0U4 201 aa10.47□□□□□ -0.73
LINC00339-201ENST00000404210 TCF7L1Q9HCS4 588 aa10.47□□□□□ -0.73
LINC00339-201ENST00000404210 C14orf119Q9NWQ9 140 aa10.47□□□□□ -0.73
LINC00339-201ENST00000404210 TAS2R4Q9NYW5 299 aa10.47□□□□□ -0.73
LINC00339-201ENST00000404210 TRAV1-2A0A0B4J238 106 aa10.46□□□□□ -0.73
LINC00339-201ENST00000404210 OR5B21A6NL26 309 aa10.46□□□□□ -0.73
LINC00339-201ENST00000404210 TMEM210A6NLX4 147 aa10.46□□□□□ -0.73
LINC00339-201ENST00000404210 H7C417 338 aa10.46□□□□□ -0.73
LINC00339-201ENST00000404210 MAGEB3O15480 346 aa10.46□□□□□ -0.73
LINC00339-201ENST00000404210 BDKRB2P30411 391 aa10.46□□□□□ -0.73
LINC00339-201ENST00000404210 SRP9P49458 86 aaKnown RBP10.46□□□□□ -0.73
LINC00339-201ENST00000404210 KRTAP10-9P60411 292 aa10.46□□□□□ -0.73
LINC00339-201ENST00000404210 PPP3R1P63098 170 aa10.46□□□□□ -0.73
LINC00339-201ENST00000404210 GNG3P63215 75 aa10.46□□□□□ -0.73
LINC00339-201ENST00000404210 MAB21L1Q13394 359 aa10.46□□□□□ -0.73
LINC00339-201ENST00000404210 CEP78Q5JTW2 689 aa10.46□□□□□ -0.73
LINC00339-201ENST00000404210 FAM27D1Q5T7N8 215 aa10.46□□□□□ -0.73
LINC00339-201ENST00000404210 GPR107Q5VW38 600 aa10.46□□□□□ -0.73
LINC00339-201ENST00000404210 C22orf42Q6IC83 251 aa10.46□□□□□ -0.73
LINC00339-201ENST00000404210 CDH26Q8IXH8 852 aa10.46□□□□□ -0.73
LINC00339-201ENST00000404210 ZCCHC24Q8N2G6 241 aaKnown RBP10.46□□□□□ -0.73
LINC00339-201ENST00000404210 OR13C9Q8NGT0 318 aa10.46□□□□□ -0.73
LINC00339-201ENST00000404210 HPSE2Q8WWQ2 592 aa10.46□□□□□ -0.73
LINC00339-201ENST00000404210 NEU4Q8WWR8 484 aaPredicted RBP10.46□□□□□ -0.73
LINC00339-201ENST00000404210 SPSB1Q96BD6 273 aa10.46□□□□□ -0.73
LINC00339-201ENST00000404210 ELMOD3Q96FG2 381 aa10.46□□□□□ -0.73
LINC00339-201ENST00000404210 KCTD7Q96MP8 289 aa10.46□□□□□ -0.73
LINC00339-201ENST00000404210 VRK1Q99986 396 aaPredicted RBP10.46□□□□□ -0.73
LINC00339-201ENST00000404210 ADAT1Q9BUB4 502 aaKnown RBP10.46□□□□□ -0.73
LINC00339-201ENST00000404210 RTL8AQ9BWD3 113 aa10.46□□□□□ -0.73
LINC00339-201ENST00000404210 EGLN1Q9GZT9 426 aa10.46□□□□□ -0.73
LINC00339-201ENST00000404210 SLITRK2Q9H156 845 aa10.46□□□□□ -0.73
LINC00339-201ENST00000404210 TMEM138Q9NPI0 162 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms