RNA–Protein interactions for RNA: ENST00000367255.9

SYNE1-207, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SYNE1, Length 27,748 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-207ENST00000367255 SF3B5Q9BWJ5 86 aaKnown RBP3.39□□□□□ -1.87
SYNE1-207ENST00000367255 DMRT3Q9NQL9 472 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 CHD4Q14839 1912 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 MDFIC2A0A1B0GVS7 189 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 SFTA3P0C7M3 94 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 SGCBQ16585 318 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 ZNF674Q2M3X9 581 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 SLC25A33Q9BSK2 321 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 RNF167Q9H6Y7 350 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 DYNLRB1Q9NP97 96 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 TMEM131LA2VDJ0 1609 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 HOXD4P09016 255 aaPredicted RBP3.39□□□□□ -1.87
SYNE1-207ENST00000367255 FBXO45P0C2W1 286 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 FAM26DQ5JW98 314 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 SMIM8Q96KF7 97 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 COMMD5Q9GZQ3 224 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 IGSF23A1L1A6 192 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 SCGB1D2O95969 90 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 HOXB5P09067 269 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 FBLP22087 321 aaKnown RBP3.39□□□□□ -1.87
SYNE1-207ENST00000367255 GNG4P50150 75 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 YPEL5P62699 121 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 ANKRD55Q3KP44 614 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 CPOQ8IVL8 374 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 TMED6Q8WW62 240 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 VPS25Q9BRG1 176 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 LINC00597Q9H2U6 94 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 ACKR4Q9NPB9 350 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 CEACAM18A8MTB9 384 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 SOX1O00570 391 aaPredicted RBP3.39□□□□□ -1.87
SYNE1-207ENST00000367255 CHRNB4P30926 498 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 CLLU1OSQ5K130 101 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 DNM1P46Q6ZS02 220 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 LRP10Q7Z4F1 713 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 PARD6AQ9NPB6 346 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 EHFQ9NZC4 300 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 OR4F21O95013 312 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 ZNF100Q8IYN0 542 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 ZNF436-AS1Q8NC38 126 aaPredicted RBP3.39□□□□□ -1.87
SYNE1-207ENST00000367255 TM7SF3Q9NS93 570 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 YBX2Q9Y2T7 364 aaKnown RBP3.39□□□□□ -1.87
SYNE1-207ENST00000367255 PDHXO00330 501 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 LDLRAD4O15165 306 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 AGXTP21549 392 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 CDKN1CP49918 316 aaPredicted RBP3.39□□□□□ -1.87
SYNE1-207ENST00000367255 VASNQ6EMK4 673 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 VN1R17PQ8TDU5 208 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 LIPHQ8WWY8 451 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 ANTXRLA6NF34 631 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 UPK2O00526 184 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 SLC25A26Q70HW3 274 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 SLC35G3Q8N808 338 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 PLPP7Q8NBV4 271 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 C20orf144Q9BQM9 153 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 ITPRIPL2Q3MIP1 535 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 NSUN3Q9H649 340 aaKnown RBP3.39□□□□□ -1.87
SYNE1-207ENST00000367255 ITSN1Q15811 1721 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 TERTO14746 1132 aaKnown RBP3.39□□□□□ -1.87
SYNE1-207ENST00000367255 ACYP1P07311 99 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 HIST1H1CP16403 213 aaKnown RBP3.39□□□□□ -1.87
SYNE1-207ENST00000367255 GPX4P36969 197 aaPredicted RBP3.39□□□□□ -1.87
SYNE1-207ENST00000367255 Q6ZS49 121 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 BPIFB2Q8N4F0 458 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 HLA-DRB3P79483 266 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 RBM45Q8IUH3 476 aaKnown RBP3.39□□□□□ -1.87
SYNE1-207ENST00000367255 OR52P1PQ8NH57 321 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 ROBO4Q8WZ75 1007 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 RDH5Q92781 318 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 SLAMF8Q9P0V8 285 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 A0A087WUJ7 227 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 ERVFC1-1P60608 527 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 LTBQ06643 244 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 FAM53BQ14153 422 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 HFE2Q6ZVN8 426 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 TMPRSS12Q86WS5 348 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 PTPMT1Q8WUK0 201 aaPredicted RBP3.39□□□□□ -1.87
SYNE1-207ENST00000367255 FAM198AQ9UFP1 575 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 UTS2RQ9UKP6 389 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 GFYI3L273 518 aa3.38□□□□□ -1.87
SYNE1-207ENST00000367255 PTGESO14684 152 aa3.38□□□□□ -1.87
SYNE1-207ENST00000367255 TSPAN2O60636 221 aa3.38□□□□□ -1.87
SYNE1-207ENST00000367255 OR2J3O76001 311 aa3.38□□□□□ -1.87
SYNE1-207ENST00000367255 PSG3Q16557 428 aa3.38□□□□□ -1.87
SYNE1-207ENST00000367255 OR2A2Q6IF42 318 aa3.38□□□□□ -1.87
SYNE1-207ENST00000367255 OR4A16Q8NH70 328 aa3.38□□□□□ -1.87
SYNE1-207ENST00000367255 ABHD6Q9BV23 337 aa3.38□□□□□ -1.87
SYNE1-207ENST00000367255 PLEKHA3Q9HB20 300 aa3.38□□□□□ -1.87
SYNE1-207ENST00000367255 LILRA2Q8N149 483 aa3.38□□□□□ -1.87
SYNE1-207ENST00000367255 DCBLD2Q96PD2 775 aa3.38□□□□□ -1.87
SYNE1-207ENST00000367255 ANKRD12Q6UB98 2062 aa3.38□□□□□ -1.87
SYNE1-207ENST00000367255 OR2W5A6NFC9 320 aa3.38□□□□□ -1.87
SYNE1-207ENST00000367255 HUS1BQ8NHY5 278 aa3.38□□□□□ -1.87
SYNE1-207ENST00000367255 HIST1H2BAQ96A08 127 aa3.38□□□□□ -1.87
SYNE1-207ENST00000367255 FAM131CQ96AQ9 280 aa3.38□□□□□ -1.87
SYNE1-207ENST00000367255 GFRA4Q9GZZ7 299 aa3.38□□□□□ -1.87
SYNE1-207ENST00000367255 EXOSC2Q13868 293 aaKnown RBP3.38□□□□□ -1.87
SYNE1-207ENST00000367255 MS4A10Q96PG2 267 aa3.38□□□□□ -1.87
SYNE1-207ENST00000367255 PLA2G12AQ9BZM1 189 aa3.38□□□□□ -1.87
SYNE1-207ENST00000367255 ISG20L2Q9H9L3 353 aaKnown RBP3.38□□□□□ -1.87
SYNE1-207ENST00000367255 RNF11Q9Y3C5 154 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms