RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 PPIAL4EA0A075B759 164 aa13.25□□□□□ -0.29
CLN3-201ENST00000333496 A0A1W2PQL4 384 aaPredicted RBP13.25□□□□□ -0.29
CLN3-201ENST00000333496 LRRC30A6NM36 301 aa13.25□□□□□ -0.29
CLN3-201ENST00000333496 CEACAM18A8MTB9 384 aa13.25□□□□□ -0.29
CLN3-201ENST00000333496 PPIAL4DF5H284 164 aa13.25□□□□□ -0.29
CLN3-201ENST00000333496 ENTPD6O75354 484 aa13.25□□□□□ -0.29
CLN3-201ENST00000333496 TTRP02766 147 aa13.25□□□□□ -0.29
CLN3-201ENST00000333496 GRPP07492 148 aa13.25□□□□□ -0.29
CLN3-201ENST00000333496 OR2T7P0C7T2 308 aa13.25□□□□□ -0.29
CLN3-201ENST00000333496 PPIAL4FP0DN26 164 aa13.25□□□□□ -0.29
CLN3-201ENST00000333496 GABRB1P18505 474 aa13.25□□□□□ -0.29
CLN3-201ENST00000333496 SNRPGP62308 76 aaKnown RBP13.25□□□□□ -0.29
CLN3-201ENST00000333496 LCN2P80188 198 aa13.25□□□□□ -0.29
CLN3-201ENST00000333496 IL5RAQ01344 420 aa13.25□□□□□ -0.29
CLN3-201ENST00000333496 POU4F2Q12837 409 aa13.25□□□□□ -0.29
CLN3-201ENST00000333496 TMED1Q13445 227 aa13.25□□□□□ -0.29
CLN3-201ENST00000333496 ZNF404Q494X3 552 aa13.25□□□□□ -0.29
CLN3-201ENST00000333496 ZNF684Q5T5D7 378 aa13.25□□□□□ -0.29
CLN3-201ENST00000333496 C1orf229Q6ZS94 237 aaPredicted RBP13.25□□□□□ -0.29
CLN3-201ENST00000333496 ZNF826PQ6ZT77 177 aa13.25□□□□□ -0.29
CLN3-201ENST00000333496 C11orf53Q8IXP5 236 aa13.25□□□□□ -0.29
CLN3-201ENST00000333496 MUC20Q8N307 709 aaPredicted RBP13.25□□□□□ -0.29
CLN3-201ENST00000333496 OR2T27Q8NH04 317 aa13.25□□□□□ -0.29
CLN3-201ENST00000333496 FBLIM1Q8WUP2 373 aa13.25□□□□□ -0.29
CLN3-201ENST00000333496 RFKQ969G6 155 aa13.25□□□□□ -0.29
CLN3-201ENST00000333496 ITPKCQ96DU7 683 aa13.25□□□□□ -0.29
CLN3-201ENST00000333496 PAPOLGQ9BWT3 736 aaKnown RBP13.25□□□□□ -0.29
CLN3-201ENST00000333496 FN3KRPQ9HA64 309 aa13.25□□□□□ -0.29
CLN3-201ENST00000333496 RNF7Q9UBF6 113 aa13.25□□□□□ -0.29
CLN3-201ENST00000333496 NUFIP1Q9UHK0 495 aaKnown RBP13.25□□□□□ -0.29
CLN3-201ENST00000333496 PCDHB10Q9UN67 800 aa13.25□□□□□ -0.29
CLN3-201ENST00000333496 PPIAL4AQ9Y536 164 aa13.25□□□□□ -0.29
CLN3-201ENST00000333496 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.24□□□□□ -0.29
CLN3-201ENST00000333496 AVPP01185 164 aa13.24□□□□□ -0.29
CLN3-201ENST00000333496 WNT2P09544 360 aa13.24□□□□□ -0.29
CLN3-201ENST00000333496 SRD5A1P18405 259 aa13.24□□□□□ -0.29
CLN3-201ENST00000333496 HNF1AP20823 631 aa13.24□□□□□ -0.29
CLN3-201ENST00000333496 TMBIM6P55061 237 aa13.24□□□□□ -0.29
CLN3-201ENST00000333496 OCLNQ16625 522 aa13.24□□□□□ -0.29
CLN3-201ENST00000333496 ZNF829Q3KNS6 432 aaPredicted RBP13.24□□□□□ -0.29
CLN3-201ENST00000333496 KRT74Q7RTS7 529 aa13.24□□□□□ -0.29
CLN3-201ENST00000333496 OR13F1Q8NGS4 319 aa13.24□□□□□ -0.29
CLN3-201ENST00000333496 OR11L1Q8NGX0 322 aa13.24□□□□□ -0.29
CLN3-201ENST00000333496 OR8S1Q8NH09 359 aa13.24□□□□□ -0.29
CLN3-201ENST00000333496 OR51E1Q8TCB6 317 aa13.24□□□□□ -0.29
CLN3-201ENST00000333496 FGF23Q9GZV9 251 aaPredicted RBP13.24□□□□□ -0.29
CLN3-201ENST00000333496 C14orf119Q9NWQ9 140 aa13.24□□□□□ -0.29
CLN3-201ENST00000333496 R4GMQ9 66 aa13.24□□□□□ -0.29
CLN3-201ENST00000333496 ZNF850A8MQ14 1090 aa13.24□□□□□ -0.29
CLN3-201ENST00000333496 H3BMQ9 156 aa13.24□□□□□ -0.29
CLN3-201ENST00000333496 CST4P01036 141 aa13.24□□□□□ -0.29
CLN3-201ENST00000333496 IRF2P14316 349 aa13.24□□□□□ -0.29
CLN3-201ENST00000333496 PCMT1P22061 227 aa13.24□□□□□ -0.29
CLN3-201ENST00000333496 CRHBPP24387 322 aa13.24□□□□□ -0.29
CLN3-201ENST00000333496 EEF1B2P24534 225 aaKnown RBP13.24□□□□□ -0.29
CLN3-201ENST00000333496 ZNF85Q03923 595 aa13.24□□□□□ -0.29
CLN3-201ENST00000333496 ZNF154Q13106 437 aa13.24□□□□□ -0.29
CLN3-201ENST00000333496 PRDX4Q13162 271 aa13.24□□□□□ -0.29
CLN3-201ENST00000333496 C6orf141Q5SZD1 244 aa13.24□□□□□ -0.29
CLN3-201ENST00000333496 FAHD2BQ6P2I3 314 aaPredicted RBP13.24□□□□□ -0.29
CLN3-201ENST00000333496 ENTHD1Q8IYW4 607 aa13.24□□□□□ -0.29
CLN3-201ENST00000333496 GCSAMQ8N6F7 178 aa13.24□□□□□ -0.29
CLN3-201ENST00000333496 OR1M1Q8NGA1 313 aa13.24□□□□□ -0.29
CLN3-201ENST00000333496 OR10H4Q8NGA5 316 aa13.24□□□□□ -0.29
CLN3-201ENST00000333496 PIGCQ92535 297 aa13.24□□□□□ -0.29
CLN3-201ENST00000333496 FAHD2AQ96GK7 314 aa13.24□□□□□ -0.29
CLN3-201ENST00000333496 TMPRSS13Q9BYE2 586 aa13.24□□□□□ -0.29
CLN3-201ENST00000333496 GPR84Q9NQS5 396 aa13.24□□□□□ -0.29
CLN3-201ENST00000333496 C1orf123Q9NWV4 160 aa13.24□□□□□ -0.29
CLN3-201ENST00000333496 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.24□□□□□ -0.29
CLN3-201ENST00000333496 POLR3KQ9Y2Y1 108 aaPredicted RBP13.24□□□□□ -0.29
CLN3-201ENST00000333496 MPC1Q9Y5U8 109 aa13.24□□□□□ -0.29
CLN3-201ENST00000333496 A0A1B0GVG6 124 aa13.23□□□□□ -0.29
CLN3-201ENST00000333496 A6NLC8 198 aa13.23□□□□□ -0.29
CLN3-201ENST00000333496 LOC110117498-PIK3R3F6TDL0 507 aa13.23□□□□□ -0.29
CLN3-201ENST00000333496 TRAPPC2LH3BP13 241 aa13.23□□□□□ -0.29
CLN3-201ENST00000333496 J3QRE1 110 aa13.23□□□□□ -0.29
CLN3-201ENST00000333496 FOXH1O75593 365 aa13.23□□□□□ -0.29
CLN3-201ENST00000333496 LHBP01229 141 aa13.23□□□□□ -0.29
CLN3-201ENST00000333496 MAP2K3P46734 347 aa13.23□□□□□ -0.29
CLN3-201ENST00000333496 MTNR1AP48039 350 aa13.23□□□□□ -0.29
CLN3-201ENST00000333496 CSNK2BP67870 215 aa13.23□□□□□ -0.29
CLN3-201ENST00000333496 MZT1Q08AG7 82 aa13.23□□□□□ -0.29
CLN3-201ENST00000333496 MEDAGQ5VYS4 303 aa13.23□□□□□ -0.29
CLN3-201ENST00000333496 SFRP4Q6FHJ7 346 aaPredicted RBP13.23□□□□□ -0.29
CLN3-201ENST00000333496 LAIR2Q6ISS4 152 aa13.23□□□□□ -0.29
CLN3-201ENST00000333496 LYPD2Q6UXB3 125 aa13.23□□□□□ -0.29
CLN3-201ENST00000333496 FTMTQ8N4E7 242 aa13.23□□□□□ -0.29
CLN3-201ENST00000333496 CNIH3Q8TBE1 160 aa13.23□□□□□ -0.29
CLN3-201ENST00000333496 RAB2BQ8WUD1 216 aa13.23□□□□□ -0.29
CLN3-201ENST00000333496 HPSE2Q8WWQ2 592 aa13.23□□□□□ -0.29
CLN3-201ENST00000333496 METTL17Q9H7H0 456 aaPredicted RBP13.23□□□□□ -0.29
CLN3-201ENST00000333496 MMP26Q9NRE1 261 aa13.23□□□□□ -0.29
CLN3-201ENST00000333496 OR52A1Q9UKL2 312 aa13.23□□□□□ -0.29
CLN3-201ENST00000333496 A8MXK9 166 aa13.22□□□□□ -0.29
CLN3-201ENST00000333496 PHF1O43189 567 aaPredicted RBP13.22□□□□□ -0.29
CLN3-201ENST00000333496 KRT8P05787 483 aa13.22□□□□□ -0.29
CLN3-201ENST00000333496 RPS2P15880 293 aaKnown RBP13.22□□□□□ -0.29
CLN3-201ENST00000333496 EGR1P18146 543 aa13.22□□□□□ -0.29
CLN3-201ENST00000333496 THBS2P35442 1172 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms