RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 SPDEFO95238 335 aa17.56■□□□□ 0.4
VPS53-201ENST00000291074 IL2RAP01589 272 aa17.56■□□□□ 0.4
VPS53-201ENST00000291074 CD8AP01732 235 aa17.56■□□□□ 0.4
VPS53-201ENST00000291074 IGHEP01854 428 aa17.56■□□□□ 0.4
VPS53-201ENST00000291074 RPS27AP62979 156 aaKnown RBP17.56■□□□□ 0.4
VPS53-201ENST00000291074 MRPS34P82930 218 aaKnown RBP17.56■□□□□ 0.4
VPS53-201ENST00000291074 CHAF1BQ13112 559 aa17.56■□□□□ 0.4
VPS53-201ENST00000291074 ATXN7L3Q14CW9 347 aaPredicted RBP17.56■□□□□ 0.4
VPS53-201ENST00000291074 FAM27BQ5VT28 67 aa17.56■□□□□ 0.4
VPS53-201ENST00000291074 KCTD9Q7L273 389 aa17.56■□□□□ 0.4
VPS53-201ENST00000291074 ZNF546Q86UE3 836 aa17.56■□□□□ 0.4
VPS53-201ENST00000291074 FBXW5Q969U6 566 aa17.56■□□□□ 0.4
VPS53-201ENST00000291074 NECAB3Q96P71 396 aaPredicted RBP17.56■□□□□ 0.4
VPS53-201ENST00000291074 MICU1Q9BPX6 476 aa17.56■□□□□ 0.4
VPS53-201ENST00000291074 URM1Q9BTM9 101 aaKnown RBP17.56■□□□□ 0.4
VPS53-201ENST00000291074 CHST5Q9GZS9 411 aa17.56■□□□□ 0.4
VPS53-201ENST00000291074 ELL3Q9HB65 397 aaPredicted RBP17.56■□□□□ 0.4
VPS53-201ENST00000291074 RDH8Q9NYR8 311 aa17.56■□□□□ 0.4
VPS53-201ENST00000291074 ZNF716A6NP11 495 aa17.56■□□□□ 0.4
VPS53-201ENST00000291074 TEX46H3BTG2 121 aa17.56■□□□□ 0.4
VPS53-201ENST00000291074 B3GALNT1O75752 331 aa17.56■□□□□ 0.4
VPS53-201ENST00000291074 NMBP08949 121 aa17.56■□□□□ 0.4
VPS53-201ENST00000291074 B4GALT1P15291 398 aa17.56■□□□□ 0.4
VPS53-201ENST00000291074 MGMTP16455 207 aa17.56■□□□□ 0.4
VPS53-201ENST00000291074 ZNF774Q6NX45 483 aa17.56■□□□□ 0.4
VPS53-201ENST00000291074 GLRX5Q86SX6 157 aa17.56■□□□□ 0.4
VPS53-201ENST00000291074 HOGA1Q86XE5 327 aa17.56■□□□□ 0.4
VPS53-201ENST00000291074 WBP1Q96G27 269 aa17.56■□□□□ 0.4
VPS53-201ENST00000291074 ARRDC1-AS1Q9H2J1 176 aa17.56■□□□□ 0.4
VPS53-201ENST00000291074 P4HTMQ9NXG6 502 aa17.56■□□□□ 0.4
VPS53-201ENST00000291074 GK2Q14410 553 aaPredicted RBP17.55■□□□□ 0.4
VPS53-201ENST00000291074 MITD1Q8WV92 249 aa17.55■□□□□ 0.4
VPS53-201ENST00000291074 SGK3Q96BR1 496 aa17.55■□□□□ 0.4
VPS53-201ENST00000291074 DMRTA2Q96SC8 542 aa17.55■□□□□ 0.4
VPS53-201ENST00000291074 DHRS9Q9BPW9 319 aa17.55■□□□□ 0.4
VPS53-201ENST00000291074 NARFLQ9H6Q4 476 aa17.55■□□□□ 0.4
VPS53-201ENST00000291074 GPR173Q9NS66 373 aa17.55■□□□□ 0.4
VPS53-201ENST00000291074 KIF25Q9UIL4 384 aa17.55■□□□□ 0.4
VPS53-201ENST00000291074 ANAPC10Q9UM13 185 aa17.55■□□□□ 0.4
VPS53-201ENST00000291074 UBBP0CG47 229 aa17.55■□□□□ 0.4
VPS53-201ENST00000291074 TBPP20226 339 aa17.55■□□□□ 0.4
VPS53-201ENST00000291074 ACKR3P25106 362 aa17.55■□□□□ 0.4
VPS53-201ENST00000291074 MPGP29372 298 aa17.55■□□□□ 0.4
VPS53-201ENST00000291074 NPY4RP50391 375 aa17.55■□□□□ 0.4
VPS53-201ENST00000291074 ATP1B3P54709 279 aa17.55■□□□□ 0.4
VPS53-201ENST00000291074 CLDN15P56746 228 aa17.55■□□□□ 0.4
VPS53-201ENST00000291074 ZNF660Q6AZW8 331 aaPredicted RBP17.55■□□□□ 0.4
VPS53-201ENST00000291074 RAB11FIP2Q7L804 512 aa17.55■□□□□ 0.4
VPS53-201ENST00000291074 OR10D3Q8NH80 312 aa17.55■□□□□ 0.4
VPS53-201ENST00000291074 ASB13Q8WXK3 278 aa17.55■□□□□ 0.4
VPS53-201ENST00000291074 SPTSSAQ969W0 71 aa17.55■□□□□ 0.4
VPS53-201ENST00000291074 INTS12Q96CB8 462 aaKnown RBP17.55■□□□□ 0.4
VPS53-201ENST00000291074 ST6GALNAC5Q9BVH7 336 aa17.55■□□□□ 0.4
VPS53-201ENST00000291074 SF3B5Q9BWJ5 86 aaKnown RBP17.55■□□□□ 0.4
VPS53-201ENST00000291074 SGCEO43556 437 aa17.55■□□□□ 0.4
VPS53-201ENST00000291074 HPP00738 406 aa17.55■□□□□ 0.4
VPS53-201ENST00000291074 NAT2P11245 290 aa17.55■□□□□ 0.4
VPS53-201ENST00000291074 PI3P19957 117 aa17.55■□□□□ 0.4
VPS53-201ENST00000291074 AKR7LQ8NHP1 331 aa17.55■□□□□ 0.4
VPS53-201ENST00000291074 SCARB1Q8WTV0 552 aa17.55■□□□□ 0.4
VPS53-201ENST00000291074 PPP1R1CQ8WVI7 109 aa17.55■□□□□ 0.4
VPS53-201ENST00000291074 SNAPC5O75971 98 aa17.54■□□□□ 0.4
VPS53-201ENST00000291074 HPNP05981 417 aa17.54■□□□□ 0.4
VPS53-201ENST00000291074 CRYGSP22914 178 aa17.54■□□□□ 0.4
VPS53-201ENST00000291074 BLVRBP30043 206 aaPredicted RBP17.54■□□□□ 0.4
VPS53-201ENST00000291074 MPLP40238 635 aa17.54■□□□□ 0.4
VPS53-201ENST00000291074 RGS19P49795 217 aa17.54■□□□□ 0.4
VPS53-201ENST00000291074 BEX5Q5H9J7 111 aa17.54■□□□□ 0.4
VPS53-201ENST00000291074 FAM89BQ8N5H3 189 aa17.54■□□□□ 0.4
VPS53-201ENST00000291074 ZNF845Q96IR2 970 aaPredicted RBP17.54■□□□□ 0.4
VPS53-201ENST00000291074 PHB2Q99623 299 aa17.54■□□□□ 0.4
VPS53-201ENST00000291074 RLN2P04090 185 aa17.54■□□□□ 0.4
VPS53-201ENST00000291074 ICAM2P13598 275 aa17.54■□□□□ 0.4
VPS53-201ENST00000291074 GDF1P27539 372 aa17.54■□□□□ 0.4
VPS53-201ENST00000291074 RFC3P40938 356 aa17.54■□□□□ 0.4
VPS53-201ENST00000291074 BAMBIQ13145 260 aa17.54■□□□□ 0.4
VPS53-201ENST00000291074 AAED1Q7RTV5 226 aa17.54■□□□□ 0.4
VPS53-201ENST00000291074 TERB2Q8NHR7 220 aa17.54■□□□□ 0.4
VPS53-201ENST00000291074 KCNE4Q8WWG9 221 aa17.54■□□□□ 0.4
VPS53-201ENST00000291074 PP6455Q8WZ26 134 aa17.54■□□□□ 0.4
VPS53-201ENST00000291074 PSMF1Q92530 271 aa17.54■□□□□ 0.4
VPS53-201ENST00000291074 TMEM38BQ9NVV0 291 aa17.54■□□□□ 0.4
VPS53-201ENST00000291074 PRR13Q9NZ81 148 aa17.54■□□□□ 0.4
VPS53-201ENST00000291074 PCDHGA1Q9Y5H4 931 aa17.54■□□□□ 0.4
VPS53-201ENST00000291074 TUBAL3A6NHL2 446 aa17.53■□□□□ 0.4
VPS53-201ENST00000291074 FOXI3A8MTJ6 420 aaPredicted RBP17.53■□□□□ 0.4
VPS53-201ENST00000291074 SDCBPO00560 298 aaPredicted RBP17.53■□□□□ 0.4
VPS53-201ENST00000291074 SYNGR3O43761 229 aa17.53■□□□□ 0.4
VPS53-201ENST00000291074 AMY2BP19961 511 aa17.53■□□□□ 0.4
VPS53-201ENST00000291074 SRSF4Q08170 494 aaKnown RBP17.53■□□□□ 0.4
VPS53-201ENST00000291074 SPINK14Q6IE38 97 aa17.53■□□□□ 0.4
VPS53-201ENST00000291074 LPCAT3Q6P1A2 487 aa17.53■□□□□ 0.4
VPS53-201ENST00000291074 PLXDC2Q6UX71 529 aa17.53■□□□□ 0.4
VPS53-201ENST00000291074 GPR137CQ8N3F9 429 aa17.53■□□□□ 0.4
VPS53-201ENST00000291074 LRRC20Q8TCA0 184 aa17.53■□□□□ 0.4
VPS53-201ENST00000291074 ADGRG7Q96K78 797 aa17.53■□□□□ 0.4
VPS53-201ENST00000291074 WDR13Q9H1Z4 485 aa17.53■□□□□ 0.4
VPS53-201ENST00000291074 FREM1Q5H8C1 2179 aa17.53■□□□□ 0.4
VPS53-201ENST00000291074 BDP1A6H8Y1 2624 aa17.53■□□□□ 0.4
VPS53-201ENST00000291074 EEF1E1-BLOC1S5C9J1V9 151 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms