RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 ALG1L2C9J202 215 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 I6L893 689 aaPredicted RBP11.49□□□□□ -0.57
USP40-201ENST00000251722 K7EQS6 105 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 B4GALT3O60512 393 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 CLDN1O95832 211 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 SFTA3P0C7M3 94 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 GPR12P47775 334 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 GSG1Q2KHT4 349 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 DRAM2Q6UX65 266 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 SLC38A9Q8NBW4 561 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 MYEOVQ96EZ4 313 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 SIRT5Q9NXA8 310 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 PCOLCE2Q9UKZ9 415 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 FOXJ3Q9UPW0 622 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 RNASEK-C17orf49H0YIS7 233 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 NDUFB3O43676 98 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 OR13C7P0DN81 318 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 SNRPBP14678 240 aaKnown RBP11.49□□□□□ -0.57
USP40-201ENST00000251722 OR10J1P30954 320 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 CDC34P49427 236 aaPredicted RBP11.49□□□□□ -0.57
USP40-201ENST00000251722 DEGS2Q6QHC5 323 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 MAMSTRQ6ZN01 415 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 CDC20BQ86Y33 519 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 D2HGDHQ8N465 521 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 TRMT61AQ96FX7 289 aaKnown RBP11.49□□□□□ -0.57
USP40-201ENST00000251722 RHOFQ9HBH0 211 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 TAF9BQ9HBM6 251 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 R4GN57 208 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 MDFIC2A0A1B0GVS7 189 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 A0A1W2PNR3 127 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 LINC00587B1AMM8 73 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 HOXB5P09067 269 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 C11orf42Q8N5U0 333 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 FAM122AQ96E09 287 aa11.49□□□□□ -0.57
USP40-201ENST00000251722 SF3B5Q9BWJ5 86 aaKnown RBP11.49□□□□□ -0.57
USP40-201ENST00000251722 HMX2A2RU54 273 aa11.48□□□□□ -0.57
USP40-201ENST00000251722 GP1BAP07359 652 aa11.48□□□□□ -0.57
USP40-201ENST00000251722 RNF224P0DH78 156 aa11.48□□□□□ -0.57
USP40-201ENST00000251722 HIST1H1CP16403 213 aaKnown RBP11.48□□□□□ -0.57
USP40-201ENST00000251722 CPEP16870 476 aa11.48□□□□□ -0.57
USP40-201ENST00000251722 ADRA2CP18825 462 aa11.48□□□□□ -0.57
USP40-201ENST00000251722 RAG2P55895 527 aa11.48□□□□□ -0.57
USP40-201ENST00000251722 EDDM3AQ14507 147 aa11.48□□□□□ -0.57
USP40-201ENST00000251722 BAP18Q8IXM2 172 aa11.48□□□□□ -0.57
USP40-201ENST00000251722 FAM213BQ8TBF2 198 aa11.48□□□□□ -0.57
USP40-201ENST00000251722 CNRIP1Q96F85 164 aaPredicted RBP11.48□□□□□ -0.57
USP40-201ENST00000251722 SEC11CQ9BY50 192 aa11.48□□□□□ -0.57
USP40-201ENST00000251722 ELF5Q9UKW6 265 aaPredicted RBP11.48□□□□□ -0.57
USP40-201ENST00000251722 EIF3GO75821 320 aaKnown RBP eCLIP11.48□□□□□ -0.57
USP40-201ENST00000251722 B3GALT4O96024 378 aa11.48□□□□□ -0.57
USP40-201ENST00000251722 SHC1P29353 583 aa11.48□□□□□ -0.57
USP40-201ENST00000251722 C21orf58P58505 322 aa11.48□□□□□ -0.57
USP40-201ENST00000251722 RELL2Q8NC24 303 aaPredicted RBP11.48□□□□□ -0.57
USP40-201ENST00000251722 OR5M1Q8NGP8 315 aa11.48□□□□□ -0.57
USP40-201ENST00000251722 ZDHHC16Q969W1 377 aa11.48□□□□□ -0.57
USP40-201ENST00000251722 ZNF320A2RRD8 509 aa11.48□□□□□ -0.57
USP40-201ENST00000251722 PCMT1P22061 227 aa11.48□□□□□ -0.57
USP40-201ENST00000251722 DTYMKP23919 212 aa11.48□□□□□ -0.57
USP40-201ENST00000251722 SLC9A3R2Q15599 337 aa11.48□□□□□ -0.57
USP40-201ENST00000251722 NCMAPQ5T1S8 102 aa11.48□□□□□ -0.57
USP40-201ENST00000251722 ZNF626Q68DY1 528 aa11.48□□□□□ -0.57
USP40-201ENST00000251722 PAQR6Q6TCH4 344 aa11.48□□□□□ -0.57
USP40-201ENST00000251722 NHLRC1Q6VVB1 395 aa11.48□□□□□ -0.57
USP40-201ENST00000251722 ZNF75AQ96N20 296 aa11.48□□□□□ -0.57
USP40-201ENST00000251722 PBOV1Q9GZY1 135 aa11.48□□□□□ -0.57
USP40-201ENST00000251722 FGF20Q9NP95 211 aaPredicted RBP11.48□□□□□ -0.57
USP40-201ENST00000251722 JTBO76095 146 aa11.48□□□□□ -0.57
USP40-201ENST00000251722 COL9A1P20849 921 aa11.48□□□□□ -0.57
USP40-201ENST00000251722 MDH2P40926 338 aaKnown RBP11.48□□□□□ -0.57
USP40-201ENST00000251722 ZNF85Q03923 595 aa11.48□□□□□ -0.57
USP40-201ENST00000251722 PJVKQ0ZLH3 352 aa11.48□□□□□ -0.57
USP40-201ENST00000251722 AGERQ15109 404 aa11.48□□□□□ -0.57
USP40-201ENST00000251722 LTC4SQ16873 150 aa11.48□□□□□ -0.57
USP40-201ENST00000251722 CMTM2Q8TAZ6 248 aa11.48□□□□□ -0.57
USP40-201ENST00000251722 RAB1BQ9H0U4 201 aa11.48□□□□□ -0.57
USP40-201ENST00000251722 MEIKINA0A087WXM9 373 aa11.47□□□□□ -0.57
USP40-201ENST00000251722 TRGV10A0A0A0MS01 117 aa11.47□□□□□ -0.57
USP40-201ENST00000251722 PHF1O43189 567 aaPredicted RBP11.47□□□□□ -0.57
USP40-201ENST00000251722 DNPH1O43598 174 aa11.47□□□□□ -0.57
USP40-201ENST00000251722 SLC35A2P78381 396 aa11.47□□□□□ -0.57
USP40-201ENST00000251722 IFITM2Q01629 132 aa11.47□□□□□ -0.57
USP40-201ENST00000251722 BAXQ07812 192 aa11.47□□□□□ -0.57
USP40-201ENST00000251722 LCN10Q6JVE6 187 aa11.47□□□□□ -0.57
USP40-201ENST00000251722 OR1F12Q8NHA8 337 aa11.47□□□□□ -0.57
USP40-201ENST00000251722 SDSLQ96GA7 329 aa11.47□□□□□ -0.57
USP40-201ENST00000251722 CHST6Q9GZX3 395 aa11.47□□□□□ -0.57
USP40-201ENST00000251722 HIF1ANQ9NWT6 349 aa11.47□□□□□ -0.57
USP40-201ENST00000251722 OCIAD1Q9NX40 245 aa11.47□□□□□ -0.57
USP40-201ENST00000251722 RNF150Q9ULK6 438 aa11.47□□□□□ -0.57
USP40-201ENST00000251722 AMMECR1Q9Y4X0 333 aaPredicted RBP11.47□□□□□ -0.57
USP40-201ENST00000251722 LY75O60449 1722 aa11.47□□□□□ -0.57
USP40-201ENST00000251722 OR5H15A6NDH6 313 aa11.47□□□□□ -0.57
USP40-201ENST00000251722 OPRM1P35372 400 aa11.47□□□□□ -0.57
USP40-201ENST00000251722 ACAA2P42765 397 aaKnown RBP11.47□□□□□ -0.57
USP40-201ENST00000251722 CSN1S1P47710 185 aa11.47□□□□□ -0.57
USP40-201ENST00000251722 ERHP84090 104 aaKnown RBP11.47□□□□□ -0.57
USP40-201ENST00000251722 EBPQ15125 230 aaKnown RBP11.47□□□□□ -0.57
USP40-201ENST00000251722 PTOV1Q86YD1 416 aa11.47□□□□□ -0.57
USP40-201ENST00000251722 OR51E1Q8TCB6 317 aa11.47□□□□□ -0.57
USP40-201ENST00000251722 TVP23CQ96ET8 276 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms