RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 OR4X2Q8NGF9 303 aa11.63□□□□□ -0.55
CLN3-249ENST00000636685 OR56B2PQ8NGI1 322 aa11.63□□□□□ -0.55
CLN3-249ENST00000636685 PITX2Q99697 317 aa11.63□□□□□ -0.55
CLN3-249ENST00000636685 NUAK2Q9H093 628 aa11.63□□□□□ -0.55
CLN3-249ENST00000636685 WDR13Q9H1Z4 485 aa11.63□□□□□ -0.55
CLN3-249ENST00000636685 HEXA-AS1Q9H8Q6 139 aa11.63□□□□□ -0.55
CLN3-249ENST00000636685 ALMS1Q8TCU4 4167 aa11.63□□□□□ -0.55
CLN3-249ENST00000636685 FAM90A8PA6NJQ4 464 aa11.62□□□□□ -0.55
CLN3-249ENST00000636685 EFCAB9A8MZ26 197 aa11.62□□□□□ -0.55
CLN3-249ENST00000636685 GLCEO94923 617 aa11.62□□□□□ -0.55
CLN3-249ENST00000636685 CHATP28329 748 aa11.62□□□□□ -0.55
CLN3-249ENST00000636685 THBS3P49746 956 aa11.62□□□□□ -0.55
CLN3-249ENST00000636685 CAV3P56539 151 aa11.62□□□□□ -0.55
CLN3-249ENST00000636685 ERVFRD-1P60508 538 aa11.62□□□□□ -0.55
CLN3-249ENST00000636685 KRR1Q13601 381 aaKnown RBP11.62□□□□□ -0.55
CLN3-249ENST00000636685 GLYATL3Q5SZD4 288 aa11.62□□□□□ -0.55
CLN3-249ENST00000636685 DLEU7Q6UYE1 221 aa11.62□□□□□ -0.55
CLN3-249ENST00000636685 OR8S1Q8NH09 359 aa11.62□□□□□ -0.55
CLN3-249ENST00000636685 TLCD1Q96CP7 247 aa11.62□□□□□ -0.55
CLN3-249ENST00000636685 MED30Q96HR3 178 aa11.62□□□□□ -0.55
CLN3-249ENST00000636685 LYZL4Q96KX0 146 aa11.62□□□□□ -0.55
CLN3-249ENST00000636685 ATF6BQ99941 703 aa11.62□□□□□ -0.55
CLN3-249ENST00000636685 PAIP2Q9BPZ3 127 aaKnown RBP11.62□□□□□ -0.55
CLN3-249ENST00000636685 POLR2J2Q9GZM3 115 aaKnown RBP11.62□□□□□ -0.55
CLN3-249ENST00000636685 DNTTIP1Q9H147 329 aa11.62□□□□□ -0.55
CLN3-249ENST00000636685 POLR2J3Q9H1A7 115 aaKnown RBP11.62□□□□□ -0.55
CLN3-249ENST00000636685 CDIPTO14735 213 aa11.61□□□□□ -0.55
CLN3-249ENST00000636685 RGS16O15492 202 aaPredicted RBP11.61□□□□□ -0.55
CLN3-249ENST00000636685 JUNBP17275 347 aaPredicted RBP11.61□□□□□ -0.55
CLN3-249ENST00000636685 NAA10P41227 235 aaPredicted RBP11.61□□□□□ -0.55
CLN3-249ENST00000636685 OR1E2P47887 323 aa11.61□□□□□ -0.55
CLN3-249ENST00000636685 TPTEP56180 551 aa11.61□□□□□ -0.55
CLN3-249ENST00000636685 MTPNP58546 118 aa11.61□□□□□ -0.55
CLN3-249ENST00000636685 SSX2Q16385 188 aa11.61□□□□□ -0.55
CLN3-249ENST00000636685 SLC18B1Q6NT16 456 aa11.61□□□□□ -0.55
CLN3-249ENST00000636685 TSEN54Q7Z6J9 526 aaKnown RBP11.61□□□□□ -0.55
CLN3-249ENST00000636685 NRMQ8IXM6 262 aa11.61□□□□□ -0.55
CLN3-249ENST00000636685 TSSK2Q96PF2 358 aa11.61□□□□□ -0.55
CLN3-249ENST00000636685 RAB3IPQ96QF0 476 aaPredicted RBP11.61□□□□□ -0.55
CLN3-249ENST00000636685 PNRC2Q9NPJ4 139 aaKnown RBP11.61□□□□□ -0.55
CLN3-249ENST00000636685 C19orf12Q9NSK7 152 aa11.61□□□□□ -0.55
CLN3-249ENST00000636685 CCDC167Q9P0B6 97 aa11.61□□□□□ -0.55
CLN3-249ENST00000636685 M0R135 149 aa11.6□□□□□ -0.55
CLN3-249ENST00000636685 DCTN6O00399 190 aa11.6□□□□□ -0.55
CLN3-249ENST00000636685 SIGLEC5O15389 551 aa11.6□□□□□ -0.55
CLN3-249ENST00000636685 SNNO75324 88 aaPredicted RBP11.6□□□□□ -0.55
CLN3-249ENST00000636685 RHBDL1O75783 438 aa11.6□□□□□ -0.55
CLN3-249ENST00000636685 STX1BP61266 288 aa11.6□□□□□ -0.55
CLN3-249ENST00000636685 RFX4Q33E94 735 aa11.6□□□□□ -0.55
CLN3-249ENST00000636685 ANKDD1AQ495B1 522 aa11.6□□□□□ -0.55
CLN3-249ENST00000636685 LDLRAD2Q5SZI1 272 aa11.6□□□□□ -0.55
CLN3-249ENST00000636685 KCTD18Q6PI47 426 aaPredicted RBP11.6□□□□□ -0.55
CLN3-249ENST00000636685 C18orf65Q6ZTR6 163 aa11.6□□□□□ -0.55
CLN3-249ENST00000636685 PTCHD4Q6ZW05 846 aa11.6□□□□□ -0.55
CLN3-249ENST00000636685 SBSPONQ8IVN8 264 aa11.6□□□□□ -0.55
CLN3-249ENST00000636685 C11orf42Q8N5U0 333 aa11.6□□□□□ -0.55
CLN3-249ENST00000636685 OR51D1Q8NGF3 324 aa11.6□□□□□ -0.55
CLN3-249ENST00000636685 ANGPTL6Q8NI99 470 aa11.6□□□□□ -0.55
CLN3-249ENST00000636685 ZNF799Q96GE5 643 aa11.6□□□□□ -0.55
CLN3-249ENST00000636685 FAM107BQ9H098 131 aa11.6□□□□□ -0.55
CLN3-249ENST00000636685 MYLK2Q9H1R3 596 aa11.6□□□□□ -0.55
CLN3-249ENST00000636685 PPP1R3EQ9H7J1 279 aa11.6□□□□□ -0.55
CLN3-249ENST00000636685 NMNAT1Q9HAN9 279 aaPredicted RBP11.6□□□□□ -0.55
CLN3-249ENST00000636685 HTR3EA5X5Y0 456 aa11.59□□□□□ -0.55
CLN3-249ENST00000636685 ACAA1P09110 424 aaPredicted RBP11.59□□□□□ -0.55
CLN3-249ENST00000636685 LUMP51884 338 aaPredicted RBP11.59□□□□□ -0.55
CLN3-249ENST00000636685 MAGOHP61326 146 aaKnown RBP11.59□□□□□ -0.55
CLN3-249ENST00000636685 MXRA7P84157 204 aa11.59□□□□□ -0.55
CLN3-249ENST00000636685 PRKCDQ05655 676 aa11.59□□□□□ -0.55
CLN3-249ENST00000636685 PGM2L1Q6PCE3 622 aa11.59□□□□□ -0.55
CLN3-249ENST00000636685 ZNF782Q6ZMW2 699 aaPredicted RBP11.59□□□□□ -0.55
CLN3-249ENST00000636685 ZNRF1Q8ND25 227 aa11.59□□□□□ -0.55
CLN3-249ENST00000636685 OR52H1Q8NGJ2 320 aa11.59□□□□□ -0.55
CLN3-249ENST00000636685 BCAS4Q8TDM0 211 aa11.59□□□□□ -0.55
CLN3-249ENST00000636685 RASSF5Q8WWW0 418 aa11.59□□□□□ -0.55
CLN3-249ENST00000636685 THAP1Q9NVV9 213 aa11.59□□□□□ -0.55
CLN3-249ENST00000636685 SORL1Q92673 2214 aa11.59□□□□□ -0.55
CLN3-249ENST00000636685 ANKRD30BLA7E2S9 258 aa11.58□□□□□ -0.56
CLN3-249ENST00000636685 EBAG9O00559 213 aa11.58□□□□□ -0.56
CLN3-249ENST00000636685 SOCS2O14508 198 aa11.58□□□□□ -0.56
CLN3-249ENST00000636685 CDC42EP2O14613 210 aa11.58□□□□□ -0.56
CLN3-249ENST00000636685 ECI1P42126 302 aa11.58□□□□□ -0.56
CLN3-249ENST00000636685 GPR4P46093 362 aa11.58□□□□□ -0.56
CLN3-249ENST00000636685 GABRA2P47869 451 aa11.58□□□□□ -0.56
CLN3-249ENST00000636685 MRPL19P49406 292 aaKnown RBP11.58□□□□□ -0.56
CLN3-249ENST00000636685 CEBPDP49716 269 aaPredicted RBP11.58□□□□□ -0.56
CLN3-249ENST00000636685 ST3GAL3Q11203 375 aa11.58□□□□□ -0.56
CLN3-249ENST00000636685 C8orf86Q6ZUL3 223 aa11.58□□□□□ -0.56
CLN3-249ENST00000636685 CCDC80Q76M96 950 aa11.58□□□□□ -0.56
CLN3-249ENST00000636685 FAM156AQ8NDB6 213 aa11.58□□□□□ -0.56
CLN3-249ENST00000636685 TMEM185AQ8NFB2 350 aa11.58□□□□□ -0.56
CLN3-249ENST00000636685 OR5K1Q8NHB7 308 aa11.58□□□□□ -0.56
CLN3-249ENST00000636685 FOXRED1Q96CU9 486 aaPredicted RBP11.58□□□□□ -0.56
CLN3-249ENST00000636685 CITED4Q96RK1 184 aa11.58□□□□□ -0.56
CLN3-249ENST00000636685 A4GNTQ9UNA3 340 aa11.58□□□□□ -0.56
CLN3-249ENST00000636685 IGLV1-36A0A0B4J1U3 117 aa11.57□□□□□ -0.56
CLN3-249ENST00000636685 RBMY1BA6NDE4 496 aaKnown RBP11.57□□□□□ -0.56
CLN3-249ENST00000636685 RBMY1EA6NEQ0 496 aaKnown RBP11.57□□□□□ -0.56
CLN3-249ENST00000636685 AKR7A2O43488 359 aa11.57□□□□□ -0.56
CLN3-249ENST00000636685 ARG1P05089 322 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms