RNA–Protein interactions for RNA: ENST00000622629.4

MSH6-215, Transcript of mutS homolog 6, human

TSL 5 BASIC

Gene MSH6, Length 4,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MSH6-215	ENST00000622629	VSIG10L2	P0DP72	767 aa		11.43	□□□□□ -0.58
MSH6-215	ENST00000622629	EGR4	Q05215	589 aa		11.43	□□□□□ -0.58
MSH6-215	ENST00000622629	INPP5J	Q15735	1006 aa	Predicted RBP	11.43	□□□□□ -0.58
MSH6-215	ENST00000622629	TMEM200A	Q86VY9	491 aa		11.43	□□□□□ -0.58
MSH6-215	ENST00000622629	DTWD2	Q8NBA8	298 aa		11.43	□□□□□ -0.58
MSH6-215	ENST00000622629	SLC26A10	Q8NG04	563 aa		11.43	□□□□□ -0.58
MSH6-215	ENST00000622629	OR51F2	Q8NH61	342 aa		11.43	□□□□□ -0.58
MSH6-215	ENST00000622629	LANCL2	Q9NS86	450 aa		11.43	□□□□□ -0.58
MSH6-215	ENST00000622629	PRR13	Q9NZ81	148 aa		11.43	□□□□□ -0.58
MSH6-215	ENST00000622629	ELF5	Q9UKW6	265 aa	Predicted RBP	11.43	□□□□□ -0.58
MSH6-215	ENST00000622629	CACNA1G	O43497	2377 aa		11.43	□□□□□ -0.58
MSH6-215	ENST00000622629		A0A087WV48	116 aa		11.43	□□□□□ -0.58
MSH6-215	ENST00000622629	IGHV3-64D	A0A0J9YX35	117 aa		11.43	□□□□□ -0.58
MSH6-215	ENST00000622629	C1orf196	B1AJZ1	125 aa		11.43	□□□□□ -0.58
MSH6-215	ENST00000622629	SLC34A2	O95436	690 aa		11.43	□□□□□ -0.58
MSH6-215	ENST00000622629	GALNS	P34059	522 aa		11.43	□□□□□ -0.58
MSH6-215	ENST00000622629	HNF4G	Q14541	408 aa		11.43	□□□□□ -0.58
MSH6-215	ENST00000622629	PAN3	Q58A45	887 aa	Known RBP	11.43	□□□□□ -0.58
MSH6-215	ENST00000622629	ZNF529	Q6P280	563 aa		11.43	□□□□□ -0.58
MSH6-215	ENST00000622629	SEZ6L2	Q6UXD5	910 aa		11.43	□□□□□ -0.58
MSH6-215	ENST00000622629	FAM213B	Q8TBF2	198 aa		11.43	□□□□□ -0.58
MSH6-215	ENST00000622629	ZNF75A	Q96N20	296 aa		11.43	□□□□□ -0.58
MSH6-215	ENST00000622629	TAF9B	Q9HBM6	251 aa		11.43	□□□□□ -0.58
MSH6-215	ENST00000622629	CDH20	Q9HBT6	801 aa		11.43	□□□□□ -0.58
MSH6-215	ENST00000622629	ZFP64	Q9NPA5	681 aa		11.43	□□□□□ -0.58
MSH6-215	ENST00000622629	LUZP4	Q9P127	313 aa		11.43	□□□□□ -0.58
MSH6-215	ENST00000622629	PATE4	P0C8F1	98 aa		11.43	□□□□□ -0.58
MSH6-215	ENST00000622629	RRAS	P10301	218 aa		11.43	□□□□□ -0.58
MSH6-215	ENST00000622629	TBP	P20226	339 aa		11.43	□□□□□ -0.58
MSH6-215	ENST00000622629	FZD5	Q13467	585 aa		11.43	□□□□□ -0.58
MSH6-215	ENST00000622629	COL4A6	Q14031	1691 aa		11.43	□□□□□ -0.58
MSH6-215	ENST00000622629	C20orf196	Q8IYI0	205 aa		11.43	□□□□□ -0.58
MSH6-215	ENST00000622629	FAM212B	Q9NTI7	297 aa	Predicted RBP	11.43	□□□□□ -0.58
MSH6-215	ENST00000622629	OR5H15	A6NDH6	313 aa		11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	LIPT2	A6NK58	231 aa		11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	GABRA1	P14867	456 aa		11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	DCAF12L2	Q5VW00	463 aa		11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	PLPP5	Q8NEB5	264 aa		11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	GPR137	Q96N19	417 aa		11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	ZNF649	Q9BS31	505 aa		11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	BCO1	Q9HAY6	547 aa		11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	SOCS1	O15524	211 aa		11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	BCL2L11	O43521	198 aa		11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	ADAP1	O75689	374 aa		11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	HIST1H1D	P16402	221 aa	Known RBP	11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	CD80	P33681	288 aa		11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	ZNF133	P52736	654 aa	Predicted RBP	11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	CAMK2B	Q13554	666 aa		11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	SP6	Q3SY56	376 aa		11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	BRICD5	Q6PL45	260 aa		11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	UNQ9370/PRO34162	Q6UXP9	181 aa		11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	PRSS42	Q7Z5A4	293 aa		11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	FAM219A	Q8IW50	185 aa		11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	TMEM217	Q8N7C4	229 aa		11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	CLEC1A	Q8NC01	280 aa		11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	OR52H1	Q8NGJ2	320 aa		11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	EMG1	Q92979	244 aa	Known RBP	11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	RASL10B	Q96S79	203 aa		11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	NECAP2	Q9NVZ3	263 aa		11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	C9orf170	A2RU37	121 aa		11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	NRAS	P01111	189 aa		11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	IGF2	P01344	180 aa		11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	LTBR	P36941	435 aa		11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	PEA15	Q15121	130 aa		11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	RHEB	Q15382	184 aa		11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	FAM122C	Q6P4D5	195 aa		11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	SLC22A25	Q6T423	547 aa		11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	ZNF485	Q8NCK3	441 aa		11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	OR8B12	Q8NGG6	310 aa		11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	FLVCR1-AS1	Q8TAF5	88 aa		11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	GPX8	Q8TED1	209 aa		11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	HGD	Q93099	445 aa		11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	ADAT3	Q96EY9	351 aa	Predicted RBP	11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	UTP23	Q9BRU9	249 aa	Known RBP	11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	CRLF2	Q9HC73	371 aa		11.42	□□□□□ -0.58
MSH6-215	ENST00000622629	ZNF629	Q9UEG4	869 aa	Predicted RBP	11.42	□□□□□ -0.58
MSH6-215	ENST00000622629		H3BMH7	237 aa		11.41	□□□□□ -0.58
MSH6-215	ENST00000622629	LMX1B	O60663	402 aa		11.41	□□□□□ -0.58
MSH6-215	ENST00000622629	ITGB2	P05107	769 aa		11.41	□□□□□ -0.58
MSH6-215	ENST00000622629	TUBG1	P23258	451 aa		11.41	□□□□□ -0.58
MSH6-215	ENST00000622629	GLRA1	P23415	457 aa		11.41	□□□□□ -0.58
MSH6-215	ENST00000622629	ECH1	Q13011	328 aa		11.41	□□□□□ -0.58
MSH6-215	ENST00000622629	COL19A1	Q14993	1142 aa		11.41	□□□□□ -0.58
MSH6-215	ENST00000622629	ARHGEF39	Q8N4T4	335 aa		11.41	□□□□□ -0.58
MSH6-215	ENST00000622629	ARRDC1	Q8N5I2	433 aa		11.41	□□□□□ -0.58
MSH6-215	ENST00000622629	RGP1	Q92546	391 aa	Predicted RBP	11.41	□□□□□ -0.58
MSH6-215	ENST00000622629	REEP6	Q96HR9	211 aa		11.41	□□□□□ -0.58
MSH6-215	ENST00000622629	ADAM19	Q9H013	955 aa		11.41	□□□□□ -0.58
MSH6-215	ENST00000622629	TRBV5-5	A0A0J9YX44	114 aa		11.41	□□□□□ -0.58
MSH6-215	ENST00000622629	EDN3	P14138	238 aa		11.41	□□□□□ -0.58
MSH6-215	ENST00000622629	RPA2	P15927	270 aa		11.41	□□□□□ -0.58
MSH6-215	ENST00000622629	CXCL2	P19875	107 aa		11.41	□□□□□ -0.58
MSH6-215	ENST00000622629	S100A2	P29034	98 aa		11.41	□□□□□ -0.58
MSH6-215	ENST00000622629	ARG2	P78540	354 aa		11.41	□□□□□ -0.58
MSH6-215	ENST00000622629	CEACAM16	Q2WEN9	425 aa		11.41	□□□□□ -0.58
MSH6-215	ENST00000622629	IGSF11	Q5DX21	431 aa		11.41	□□□□□ -0.58
MSH6-215	ENST00000622629	LILRB2	Q8N423	598 aa		11.41	□□□□□ -0.58
MSH6-215	ENST00000622629	THOC3	Q96J01	351 aa	Known RBP	11.41	□□□□□ -0.58
MSH6-215	ENST00000622629	LINC00052	Q96N35	136 aa		11.41	□□□□□ -0.58
MSH6-215	ENST00000622629	ZNF426	Q9BUY5	554 aa		11.41	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms