RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 THAP5Q7Z6K1 395 aa12.66□□□□□ -0.38
UPF1-202ENST00000594243 LRRC28Q86X40 367 aaPredicted RBP12.66□□□□□ -0.38
UPF1-202ENST00000594243 EGFL6Q8IUX8 553 aa12.66□□□□□ -0.38
UPF1-202ENST00000594243 MUC20Q8N307 709 aaPredicted RBP12.66□□□□□ -0.38
UPF1-202ENST00000594243 KLHL36Q8N4N3 616 aa12.66□□□□□ -0.38
UPF1-202ENST00000594243 SEMA6DQ8NFY4 1073 aa12.66□□□□□ -0.38
UPF1-202ENST00000594243 APH1BQ8WW43 257 aa12.66□□□□□ -0.38
UPF1-202ENST00000594243 PIGCQ92535 297 aa12.66□□□□□ -0.38
UPF1-202ENST00000594243 PPP1R14AQ96A00 147 aa12.66□□□□□ -0.38
UPF1-202ENST00000594243 HIST1H2AAQ96QV6 131 aa12.66□□□□□ -0.38
UPF1-202ENST00000594243 MICU1Q9BPX6 476 aa12.66□□□□□ -0.38
UPF1-202ENST00000594243 SOX7Q9BT81 388 aa12.66□□□□□ -0.38
UPF1-202ENST00000594243 ZNF665Q9H7R5 613 aa12.66□□□□□ -0.38
UPF1-202ENST00000594243 AMBNQ9NP70 447 aa12.66□□□□□ -0.38
UPF1-202ENST00000594243 GPR84Q9NQS5 396 aa12.66□□□□□ -0.38
UPF1-202ENST00000594243 UFSP2Q9NUQ7 469 aa12.66□□□□□ -0.38
UPF1-202ENST00000594243 MRPS18AQ9NVS2 196 aaKnown RBP12.66□□□□□ -0.38
UPF1-202ENST00000594243 DCAF16Q9NXF7 216 aa12.66□□□□□ -0.38
UPF1-202ENST00000594243 NKX1-2Q9UD57 310 aaPredicted RBP12.66□□□□□ -0.38
UPF1-202ENST00000594243 GNG8Q9UK08 70 aa12.66□□□□□ -0.38
UPF1-202ENST00000594243 KCNS2Q9ULS6 477 aa12.66□□□□□ -0.38
UPF1-202ENST00000594243 PCDHB10Q9UN67 800 aa12.66□□□□□ -0.38
UPF1-202ENST00000594243 HSPE1-MOB4S4R3N1 261 aa12.66□□□□□ -0.38
UPF1-202ENST00000594243 ZNF816-ZNF321PA0A0X1KG74 233 aa12.65□□□□□ -0.38
UPF1-202ENST00000594243 ZNF850A8MQ14 1090 aa12.65□□□□□ -0.38
UPF1-202ENST00000594243 INAFM1C9JVW0 142 aa12.65□□□□□ -0.38
UPF1-202ENST00000594243 LMX1BO60663 402 aa12.65□□□□□ -0.38
UPF1-202ENST00000594243 FSTL3O95633 263 aa12.65□□□□□ -0.38
UPF1-202ENST00000594243 CLIC3O95833 236 aa12.65□□□□□ -0.38
UPF1-202ENST00000594243 CYB5R3P00387 301 aaPredicted RBP12.65□□□□□ -0.38
UPF1-202ENST00000594243 ZNF16P17020 682 aaPredicted RBP12.65□□□□□ -0.38
UPF1-202ENST00000594243 ACKR3P25106 362 aa12.65□□□□□ -0.38
UPF1-202ENST00000594243 CAPGP40121 348 aa12.65□□□□□ -0.38
UPF1-202ENST00000594243 PMELP40967 661 aa12.65□□□□□ -0.38
UPF1-202ENST00000594243 ACTA2P62736 377 aa12.65□□□□□ -0.38
UPF1-202ENST00000594243 ACTG2P63267 376 aa12.65□□□□□ -0.38
UPF1-202ENST00000594243 PRDX4Q13162 271 aa12.65□□□□□ -0.38
UPF1-202ENST00000594243 MPPED2Q15777 294 aa12.65□□□□□ -0.38
UPF1-202ENST00000594243 CDONQ4KMG0 1287 aa12.65□□□□□ -0.38
UPF1-202ENST00000594243 TP53I3Q53FA7 332 aa12.65□□□□□ -0.38
UPF1-202ENST00000594243 ZBTB37Q5TC79 503 aa12.65□□□□□ -0.38
UPF1-202ENST00000594243 PRAMEF6Q5VXH4 476 aa12.65□□□□□ -0.38
UPF1-202ENST00000594243 KRT74Q7RTS7 529 aa12.65□□□□□ -0.38
UPF1-202ENST00000594243 CATSPERDQ86XM0 798 aa12.65□□□□□ -0.38
UPF1-202ENST00000594243 SPICQ8N5J4 248 aa12.65□□□□□ -0.38
UPF1-202ENST00000594243 RORBQ92753 470 aa12.65□□□□□ -0.38
UPF1-202ENST00000594243 DVL3Q92997 716 aaPredicted RBP12.65□□□□□ -0.38
UPF1-202ENST00000594243 FAM71F1Q96KD3 344 aaPredicted RBP12.65□□□□□ -0.38
UPF1-202ENST00000594243 ADI1Q9BV57 179 aa12.65□□□□□ -0.38
UPF1-202ENST00000594243 RNPEPL1Q9HAU8 725 aa12.65□□□□□ -0.38
UPF1-202ENST00000594243 INPP5EQ9NRR6 644 aa12.65□□□□□ -0.38
UPF1-202ENST00000594243 TMEM160Q9NX00 188 aa12.65□□□□□ -0.38
UPF1-202ENST00000594243 RNF7Q9UBF6 113 aa12.65□□□□□ -0.38
UPF1-202ENST00000594243 PPIAL4EA0A075B759 164 aa12.64□□□□□ -0.39
UPF1-202ENST00000594243 IRGMA1A4Y4 181 aa12.64□□□□□ -0.39
UPF1-202ENST00000594243 PPIAL4DF5H284 164 aa12.64□□□□□ -0.39
UPF1-202ENST00000594243 FAM20BO75063 409 aa12.64□□□□□ -0.39
UPF1-202ENST00000594243 WBP4O75554 376 aaKnown RBP12.64□□□□□ -0.39
UPF1-202ENST00000594243 DHRS3O75911 302 aa12.64□□□□□ -0.39
UPF1-202ENST00000594243 IGHV2-5P01817 119 aa12.64□□□□□ -0.39
UPF1-202ENST00000594243 PPIAL4FP0DN26 164 aa12.64□□□□□ -0.39
UPF1-202ENST00000594243 CPT2P23786 658 aa12.64□□□□□ -0.39
UPF1-202ENST00000594243 MDH2P40926 338 aaKnown RBP12.64□□□□□ -0.39
UPF1-202ENST00000594243 ISL1P61371 349 aa12.64□□□□□ -0.39
UPF1-202ENST00000594243 GALEQ14376 348 aa12.64□□□□□ -0.39
UPF1-202ENST00000594243 DOK3Q7L591 496 aa12.64□□□□□ -0.39
UPF1-202ENST00000594243 ZDHHC23Q8IYP9 409 aa12.64□□□□□ -0.39
UPF1-202ENST00000594243 C8orf59Q8N0T1 100 aaPredicted RBP12.64□□□□□ -0.39
UPF1-202ENST00000594243 CCDC54Q8NEL0 328 aa12.64□□□□□ -0.39
UPF1-202ENST00000594243 ITPKCQ96DU7 683 aa12.64□□□□□ -0.39
UPF1-202ENST00000594243 RTL8AQ9BWD3 113 aa12.64□□□□□ -0.39
UPF1-202ENST00000594243 UBAP1Q9NZ09 502 aa12.64□□□□□ -0.39
UPF1-202ENST00000594243 ENPP5Q9UJA9 477 aa12.64□□□□□ -0.39
UPF1-202ENST00000594243 SLC22A13Q9Y226 551 aa12.64□□□□□ -0.39
UPF1-202ENST00000594243 PIGLQ9Y2B2 252 aa12.64□□□□□ -0.39
UPF1-202ENST00000594243 MYRFQ9Y2G1 1151 aa12.64□□□□□ -0.39
UPF1-202ENST00000594243 PPIAL4AQ9Y536 164 aa12.64□□□□□ -0.39
UPF1-202ENST00000594243 TANC2Q9HCD6 1990 aa12.63□□□□□ -0.39
UPF1-202ENST00000594243 A6NLC8 198 aa12.63□□□□□ -0.39
UPF1-202ENST00000594243 DHRS7CA6NNS2 312 aa12.63□□□□□ -0.39
UPF1-202ENST00000594243 FAM157AC9JC47 383 aa12.63□□□□□ -0.39
UPF1-202ENST00000594243 H0YJX3 145 aa12.63□□□□□ -0.39
UPF1-202ENST00000594243 J3QLW9 94 aa12.63□□□□□ -0.39
UPF1-202ENST00000594243 P2RY10O00398 339 aa12.63□□□□□ -0.39
UPF1-202ENST00000594243 IGHA1P01876 353 aa12.63□□□□□ -0.39
UPF1-202ENST00000594243 MSMBP08118 114 aa12.63□□□□□ -0.39
UPF1-202ENST00000594243 ZNF19P17023 458 aa12.63□□□□□ -0.39
UPF1-202ENST00000594243 PCMT1P22061 227 aa12.63□□□□□ -0.39
UPF1-202ENST00000594243 DVL1P1P54792 670 aaPredicted RBP12.63□□□□□ -0.39
UPF1-202ENST00000594243 OR12D2P58182 307 aa12.63□□□□□ -0.39
UPF1-202ENST00000594243 ZMYND11Q15326 602 aa12.63□□□□□ -0.39
UPF1-202ENST00000594243 LHFPL3Q86UP9 236 aa12.63□□□□□ -0.39
UPF1-202ENST00000594243 OR1M1Q8NGA1 313 aa12.63□□□□□ -0.39
UPF1-202ENST00000594243 OR52I1Q8NGK6 324 aa12.63□□□□□ -0.39
UPF1-202ENST00000594243 OR51F2Q8NH61 342 aa12.63□□□□□ -0.39
UPF1-202ENST00000594243 CNIH3Q8TBE1 160 aa12.63□□□□□ -0.39
UPF1-202ENST00000594243 OR5P3Q8WZ94 311 aa12.63□□□□□ -0.39
UPF1-202ENST00000594243 RNF170Q96K19 258 aa12.63□□□□□ -0.39
UPF1-202ENST00000594243 ALG8Q9BVK2 526 aa12.63□□□□□ -0.39
UPF1-202ENST00000594243 VCX3BQ9H321 246 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms