RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 ZNF703Q9H7S9 590 aaPredicted RBP8.71□□□□□ -1.01
LIG3-216ENST00000593099 KCNE5Q9UJ90 142 aa8.71□□□□□ -1.01
LIG3-216ENST00000593099 A0A0B4J203 849 aa8.71□□□□□ -1.01
LIG3-216ENST00000593099 C13orf42A0A1B0GVH6 325 aa8.71□□□□□ -1.01
LIG3-216ENST00000593099 RPS4Y1P22090 263 aaKnown RBP8.71□□□□□ -1.01
LIG3-216ENST00000593099 LTC4SQ16873 150 aa8.71□□□□□ -1.01
LIG3-216ENST00000593099 SFXN4Q6P4A7 337 aa8.71□□□□□ -1.01
LIG3-216ENST00000593099 IDO2Q6ZQW0 420 aa8.71□□□□□ -1.01
LIG3-216ENST00000593099 MRGPRGQ86SM5 289 aa8.71□□□□□ -1.01
LIG3-216ENST00000593099 INO80EQ8NBZ0 244 aaPredicted RBP8.71□□□□□ -1.01
LIG3-216ENST00000593099 OR51D1Q8NGF3 324 aa8.71□□□□□ -1.01
LIG3-216ENST00000593099 JAM3Q9BX67 310 aa8.71□□□□□ -1.01
LIG3-216ENST00000593099 F8W036 122 aa8.71□□□□□ -1.02
LIG3-216ENST00000593099 SULT1C2O00338 296 aa8.71□□□□□ -1.02
LIG3-216ENST00000593099 TOR1AO14656 332 aa8.71□□□□□ -1.02
LIG3-216ENST00000593099 DXOO77932 396 aaKnown RBP8.71□□□□□ -1.02
LIG3-216ENST00000593099 SCGB1D2O95969 90 aa8.71□□□□□ -1.02
LIG3-216ENST00000593099 PDGFAP04085 211 aa8.71□□□□□ -1.02
LIG3-216ENST00000593099 CRHP06850 196 aa8.71□□□□□ -1.02
LIG3-216ENST00000593099 CHRM2P08172 466 aa8.71□□□□□ -1.02
LIG3-216ENST00000593099 BLOC1S1P78537 153 aa8.71□□□□□ -1.02
LIG3-216ENST00000593099 MRPS34P82930 218 aaKnown RBP8.71□□□□□ -1.02
LIG3-216ENST00000593099 CDK10Q15131 360 aa8.71□□□□□ -1.02
LIG3-216ENST00000593099 ST3GAL2Q16842 350 aa8.71□□□□□ -1.02
LIG3-216ENST00000593099 ALKBH6Q3KRA9 238 aa8.71□□□□□ -1.02
LIG3-216ENST00000593099 ZNF468Q5VIY5 522 aaPredicted RBP8.71□□□□□ -1.02
LIG3-216ENST00000593099 ADGRE4PQ86SQ3 457 aa8.71□□□□□ -1.02
LIG3-216ENST00000593099 OR2Z1Q8NG97 314 aa8.71□□□□□ -1.02
LIG3-216ENST00000593099 SNX18Q96RF0 628 aa8.71□□□□□ -1.02
LIG3-216ENST00000593099 TIMP4Q99727 224 aa8.71□□□□□ -1.02
LIG3-216ENST00000593099 CITED1Q99966 193 aa8.71□□□□□ -1.02
LIG3-216ENST00000593099 FN3KRPQ9HA64 309 aa8.71□□□□□ -1.02
LIG3-216ENST00000593099 C19orf12Q9NSK7 152 aa8.71□□□□□ -1.02
LIG3-216ENST00000593099 TMEM38BQ9NVV0 291 aa8.71□□□□□ -1.02
LIG3-216ENST00000593099 DSPPQ9NZW4 1301 aa8.71□□□□□ -1.02
LIG3-216ENST00000593099 INMT-MINDY4F8WBC2 141 aa8.71□□□□□ -1.02
LIG3-216ENST00000593099 SH2D1BO14796 132 aa8.71□□□□□ -1.02
LIG3-216ENST00000593099 SPINT2O43291 252 aa8.71□□□□□ -1.02
LIG3-216ENST00000593099 PTBP3O95758 552 aaKnown RBP8.71□□□□□ -1.02
LIG3-216ENST00000593099 CSF1P09603 554 aa8.71□□□□□ -1.02
LIG3-216ENST00000593099 RD3LP0DJH9 198 aa8.71□□□□□ -1.02
LIG3-216ENST00000593099 TDGF1P13385 188 aa8.71□□□□□ -1.02
LIG3-216ENST00000593099 THBS4P35443 961 aa8.71□□□□□ -1.02
LIG3-216ENST00000593099 TBR1Q16650 682 aa8.71□□□□□ -1.02
LIG3-216ENST00000593099 DOK1Q99704 481 aa8.71□□□□□ -1.02
LIG3-216ENST00000593099 CACNG6Q9BXT2 260 aa8.71□□□□□ -1.02
LIG3-216ENST00000593099 FLVCR1Q9Y5Y0 555 aa8.71□□□□□ -1.02
LIG3-216ENST00000593099 ETV7Q9Y603 341 aa8.71□□□□□ -1.02
LIG3-216ENST00000593099 LOC100289279A0A1B0GTE1 492 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 ZNF732B4DXR9 585 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 NTN1O95631 604 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 GPANK1O95872 356 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 EPPINO95925 133 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 FAHP16930 419 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 CAV3P56539 151 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 ERVK-16P61578 105 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 AVPI1Q5T686 147 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 TMEM104Q8NE00 496 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 OR56B2PQ8NGI1 322 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 OR6F1Q8NGZ6 308 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 OR4K15Q8NH41 348 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 LGALS14Q8TCE9 139 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 CREB3L1Q96BA8 519 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 SFXN3Q9BWM7 321 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 HINT2Q9BX68 163 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 BEX1Q9HBH7 125 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 HSBP1L1C9JCN9 74 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 AQP7O14520 342 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 FUT6P51993 359 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 ZNF133P52736 654 aaPredicted RBP8.7□□□□□ -1.02
LIG3-216ENST00000593099 GNG3P63215 75 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 ETFDHQ16134 617 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 HIKESHIQ53FT3 197 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 TMEM41BQ5BJD5 291 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 RNF128Q8TEB7 428 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 C4orf45Q96LM5 186 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 ADAT1Q9BUB4 502 aaKnown RBP8.7□□□□□ -1.02
LIG3-216ENST00000593099 OPN3Q9H1Y3 402 aaPredicted RBP8.7□□□□□ -1.02
LIG3-216ENST00000593099 SLC2A9Q9NRM0 540 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 GSKIPQ9P0R6 139 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 TRAV6A0A075B6T7 132 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 LY6G6EA0A0G2JKS1 128 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 MPPED1O15442 326 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 NCR1O76036 304 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 RGS11O94810 467 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 RFPL3SP0C7P2 107 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 IL3RAP26951 378 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 CHRNB4P30926 498 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 LIPAP38571 399 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 HAAOP46952 286 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 DOC2BQ14184 412 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 MEF2DQ14814 521 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 ZNF674Q2M3X9 581 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 ESCO2Q56NI9 601 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 UBE2NLQ5JXB2 153 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 SLC25A26Q70HW3 274 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 HYLS1Q96M11 299 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 PRSS27Q9BQR3 290 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 OCSTAMPQ9BR26 566 aa8.7□□□□□ -1.02
LIG3-216ENST00000593099 FLVCR2Q9UPI3 526 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms