RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 OR2AT4A6NND4 320 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 F5H5K5 113 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 I3L521 148 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 TNFSF11O14788 317 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 IL2RAP01589 272 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 UBBP0CG47 229 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 PRF1P14222 555 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 HIST1H1DP16402 221 aaKnown RBP8.86□□□□□ -0.99
VPS53-220ENST00000576149 HLA-GP17693 338 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 POU3F2P20265 443 aaPredicted RBP8.86□□□□□ -0.99
VPS53-220ENST00000576149 CALCRP30988 508 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 OTX1P32242 354 aaPredicted RBP8.86□□□□□ -0.99
VPS53-220ENST00000576149 TMEM50BP56557 158 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 ECH1Q13011 328 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 FAM189A2Q15884 450 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 AANATQ16613 207 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 AARDQ4LEZ3 155 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 KRBOX4Q5JUW0 171 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 BEST3Q8N1M1 668 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 LRRC18Q8N456 261 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 GPER1Q99527 375 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 RBM24Q9BX46 236 aaKnown RBP8.86□□□□□ -0.99
VPS53-220ENST00000576149 CST11Q9H112 138 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 BANF2Q9H503 90 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 ZNF230Q9UIE0 474 aaPredicted RBP8.86□□□□□ -0.99
VPS53-220ENST00000576149 NOP16Q9Y3C1 178 aaKnown RBP8.86□□□□□ -0.99
VPS53-220ENST00000576149 LOC100509620A0A075B734 347 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 GJE1A6NN92 205 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 B4E171 279 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 CRYZL1O95825 349 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 IGHEP01854 428 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 IFNA6P05013 189 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 LIPCP11150 499 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 B3GALT5-AS1P59052 145 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 FGL1Q08830 312 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 PPP1R1AQ13522 171 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 FAHD2BQ6P2I3 314 aaPredicted RBP8.85□□□□□ -0.99
VPS53-220ENST00000576149 CRIP3Q6Q6R5 217 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 GSG1LQ6UXU4 331 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 Q6ZSR3 168 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 C20orf196Q8IYI0 205 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 OR4K15Q8NH41 348 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 SCARB1Q8WTV0 552 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 MITD1Q8WV92 249 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 FAHD2AQ96GK7 314 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 LIN37Q96GY3 246 aaPredicted RBP8.85□□□□□ -0.99
VPS53-220ENST00000576149 SRXN1Q9BYN0 137 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 MFFQ9GZY8 342 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 V9GYS6 101 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 C9orf170A2RU37 121 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 OR5H14A6NHG9 310 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 DNPH1O43598 174 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 CRTAPO75718 401 aaPredicted RBP8.85□□□□□ -0.99
VPS53-220ENST00000576149 DHRS3O75911 302 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 PMP2P02689 132 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 GP1BAP07359 652 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 AGTR1P30556 359 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 THBS4P35443 961 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 ALDH3B1P43353 468 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 SLC6A9P48067 706 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 ZXDAP98168 799 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 GK2Q14410 553 aaPredicted RBP8.85□□□□□ -0.99
VPS53-220ENST00000576149 KISS1Q15726 138 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 STK11Q15831 433 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 PNLIPRP3Q17RR3 467 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 TMEM65Q6PI78 240 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 PPP1R32Q7Z5V6 425 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 DTX1Q86Y01 620 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 C1orf210Q8IVY1 113 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 FAM89BQ8N5H3 189 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 ZNF565Q8N9K5 539 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 OR56B1Q8NGI3 324 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 OR6K3Q8NGY3 331 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 WBP1Q96G27 269 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 ZNF845Q96IR2 970 aaPredicted RBP8.85□□□□□ -0.99
VPS53-220ENST00000576149 URM1Q9BTM9 101 aaKnown RBP8.85□□□□□ -0.99
VPS53-220ENST00000576149 SF3B5Q9BWJ5 86 aaKnown RBP8.85□□□□□ -0.99
VPS53-220ENST00000576149 ULBP2Q9BZM5 246 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 FN3KRPQ9HA64 309 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 ZNF224Q9NZL3 707 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 GHRLQ9UBU3 117 aa8.85□□□□□ -0.99
VPS53-220ENST00000576149 M0R135 149 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 MFNGO00587 321 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 SMAD9O15198 467 aaKnown RBP8.84□□□□□ -0.99
VPS53-220ENST00000576149 EFSO43281 561 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 RAD51DO75771 328 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 NMBP08949 121 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 ZNF250P15622 560 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 MPGP29372 298 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 SRD5A2P31213 254 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 PTGFRP43088 359 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 ZNF84P51523 738 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 RAC3P60763 192 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 IL13RA1P78552 427 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 CHAF1BQ13112 559 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 UBE2V2Q15819 145 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 FAM27BQ5VT28 67 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 ALKAL2Q6UX46 152 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 ZNF546Q86UE3 836 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 HOGA1Q86XE5 327 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms