RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 GCH1P30793 250 aa7.88□□□□□ -1.15
VPS35-211ENST00000569950 TGFBR2P37173 567 aa7.88□□□□□ -1.15
VPS35-211ENST00000569950 PMELP40967 661 aa7.88□□□□□ -1.15
VPS35-211ENST00000569950 GBX2P52951 348 aaPredicted RBP7.88□□□□□ -1.15
VPS35-211ENST00000569950 MALLQ13021 153 aa7.88□□□□□ -1.15
VPS35-211ENST00000569950 MRPL28Q13084 256 aaKnown RBP7.88□□□□□ -1.15
VPS35-211ENST00000569950 MAB21L1Q13394 359 aa7.88□□□□□ -1.15
VPS35-211ENST00000569950 DMRTC1Q5HYR2 192 aa7.88□□□□□ -1.15
VPS35-211ENST00000569950 ZNF529Q6P280 563 aa7.88□□□□□ -1.15
VPS35-211ENST00000569950 UNQ6126/PRO20091Q6UXV3 157 aa7.88□□□□□ -1.15
VPS35-211ENST00000569950 C11orf53Q8IXP5 236 aa7.88□□□□□ -1.15
VPS35-211ENST00000569950 OR10AD1Q8NGE0 317 aa7.88□□□□□ -1.15
VPS35-211ENST00000569950 GHSRQ92847 366 aa7.88□□□□□ -1.15
VPS35-211ENST00000569950 MUL1Q969V5 352 aa7.88□□□□□ -1.15
VPS35-211ENST00000569950 ORAI1Q96D31 301 aa7.88□□□□□ -1.15
VPS35-211ENST00000569950 ITPKCQ96DU7 683 aa7.88□□□□□ -1.15
VPS35-211ENST00000569950 CCL19Q99731 98 aa7.88□□□□□ -1.15
VPS35-211ENST00000569950 PPIL3Q9H2H8 161 aaKnown RBP7.88□□□□□ -1.15
VPS35-211ENST00000569950 TPK1Q9H3S4 243 aa7.88□□□□□ -1.15
VPS35-211ENST00000569950 OPA3Q9H6K4 179 aa7.88□□□□□ -1.15
VPS35-211ENST00000569950 SP140LQ9H930 580 aa7.88□□□□□ -1.15
VPS35-211ENST00000569950 ISYNA1Q9NPH2 558 aa7.88□□□□□ -1.15
VPS35-211ENST00000569950 TRIM36Q9NQ86 728 aa7.88□□□□□ -1.15
VPS35-211ENST00000569950 MRPL15Q9P015 296 aaKnown RBP7.88□□□□□ -1.15
VPS35-211ENST00000569950 GTF2A1LQ9UNN4 478 aa7.88□□□□□ -1.15
VPS35-211ENST00000569950 ERGIC3Q9Y282 383 aa7.88□□□□□ -1.15
VPS35-211ENST00000569950 TRBV5-7A0A0A0MS05 114 aa7.87□□□□□ -1.15
VPS35-211ENST00000569950 TRBV2A0A0J9YWF9 115 aa7.87□□□□□ -1.15
VPS35-211ENST00000569950 A0A1W2PPW3 197 aa7.87□□□□□ -1.15
VPS35-211ENST00000569950 TMEM212A6NML5 194 aa7.87□□□□□ -1.15
VPS35-211ENST00000569950 F5H5P2 479 aa7.87□□□□□ -1.15
VPS35-211ENST00000569950 TIMM8AO60220 97 aaPredicted RBP7.87□□□□□ -1.15
VPS35-211ENST00000569950 RP2O75695 350 aa7.87□□□□□ -1.15
VPS35-211ENST00000569950 TNFAIP8O95379 198 aa7.87□□□□□ -1.15
VPS35-211ENST00000569950 ATP6V1B1P15313 513 aa7.87□□□□□ -1.15
VPS35-211ENST00000569950 CPEP16870 476 aa7.87□□□□□ -1.15
VPS35-211ENST00000569950 CELP19835 753 aa7.87□□□□□ -1.15
VPS35-211ENST00000569950 CA6P23280 308 aa7.87□□□□□ -1.15
VPS35-211ENST00000569950 EEF1B2P24534 225 aaKnown RBP7.87□□□□□ -1.15
VPS35-211ENST00000569950 LIPAP38571 399 aa7.87□□□□□ -1.15
VPS35-211ENST00000569950 PTH2RP49190 550 aa7.87□□□□□ -1.15
VPS35-211ENST00000569950 HOXA4Q00056 320 aaPredicted RBP7.87□□□□□ -1.15
VPS35-211ENST00000569950 MLLT11Q13015 90 aaPredicted RBP7.87□□□□□ -1.15
VPS35-211ENST00000569950 MED22Q15528 200 aa7.87□□□□□ -1.15
VPS35-211ENST00000569950 UBE2V2Q15819 145 aa7.87□□□□□ -1.15
VPS35-211ENST00000569950 SYT6Q5T7P8 510 aaPredicted RBP7.87□□□□□ -1.15
VPS35-211ENST00000569950 ZBTB37Q5TC79 503 aa7.87□□□□□ -1.15
VPS35-211ENST00000569950 TMEM244Q5VVB8 128 aa7.87□□□□□ -1.15
VPS35-211ENST00000569950 UNQ9370/PRO34162Q6UXP9 181 aa7.87□□□□□ -1.15
VPS35-211ENST00000569950 TMEM91Q6ZNR0 172 aa7.87□□□□□ -1.15
VPS35-211ENST00000569950 DOK3Q7L591 496 aa7.87□□□□□ -1.15
VPS35-211ENST00000569950 ZNF367Q7RTV3 350 aa7.87□□□□□ -1.15
VPS35-211ENST00000569950 CDH24Q86UP0 819 aa7.87□□□□□ -1.15
VPS35-211ENST00000569950 PHC2Q8IXK0 858 aa7.87□□□□□ -1.15
VPS35-211ENST00000569950 OR5AK2Q8NH90 309 aa7.87□□□□□ -1.15
VPS35-211ENST00000569950 HAVCR2Q8TDQ0 301 aa7.87□□□□□ -1.15
VPS35-211ENST00000569950 YIPF5Q969M3 257 aa7.87□□□□□ -1.15
VPS35-211ENST00000569950 TRMT61AQ96FX7 289 aaKnown RBP7.87□□□□□ -1.15
VPS35-211ENST00000569950 MRPL48Q96GC5 212 aaKnown RBP7.87□□□□□ -1.15
VPS35-211ENST00000569950 NR1H4Q96RI1 486 aaPredicted RBP7.87□□□□□ -1.15
VPS35-211ENST00000569950 MGLLQ99685 303 aa7.87□□□□□ -1.15
VPS35-211ENST00000569950 GSX2Q9BZM3 304 aa7.87□□□□□ -1.15
VPS35-211ENST00000569950 CCDC90BQ9GZT6 254 aa7.87□□□□□ -1.15
VPS35-211ENST00000569950 ZNF275Q9NSD4 429 aaPredicted RBP7.87□□□□□ -1.15
VPS35-211ENST00000569950 FAIMQ9NVQ4 179 aa7.87□□□□□ -1.15
VPS35-211ENST00000569950 DCAF16Q9NXF7 216 aa7.87□□□□□ -1.15
VPS35-211ENST00000569950 NKIRAS2Q9NYR9 191 aa7.87□□□□□ -1.15
VPS35-211ENST00000569950 CGGBP1Q9UFW8 167 aaPredicted RBP7.87□□□□□ -1.15
VPS35-211ENST00000569950 GPR160Q9UJ42 338 aa7.87□□□□□ -1.15
VPS35-211ENST00000569950 CACNG2Q9Y698 323 aa7.87□□□□□ -1.15
VPS35-211ENST00000569950 IGKV1-27A0A075B6S5 117 aa7.86□□□□□ -1.15
VPS35-211ENST00000569950 PNMA8CA0A1B0GUJ8 204 aa7.86□□□□□ -1.15
VPS35-211ENST00000569950 MAGEA13PA6NCF6 341 aa7.86□□□□□ -1.15
VPS35-211ENST00000569950 ANKRD61A6NGH8 418 aa7.86□□□□□ -1.15
VPS35-211ENST00000569950 GGT3PA6NGU5 568 aa7.86□□□□□ -1.15
VPS35-211ENST00000569950 ZNF850A8MQ14 1090 aa7.86□□□□□ -1.15
VPS35-211ENST00000569950 C3orf80F5H4A9 247 aa7.86□□□□□ -1.15
VPS35-211ENST00000569950 LYNX1G3V0Z9 82 aa7.86□□□□□ -1.15
VPS35-211ENST00000569950 SYT7O43581 403 aa7.86□□□□□ -1.15
VPS35-211ENST00000569950 GMDSO60547 372 aa7.86□□□□□ -1.15
VPS35-211ENST00000569950 LYNX1P0DP58 116 aa7.86□□□□□ -1.15
VPS35-211ENST00000569950 JUNBP17275 347 aaPredicted RBP7.86□□□□□ -1.15
VPS35-211ENST00000569950 CFL1P23528 166 aaKnown RBP7.86□□□□□ -1.15
VPS35-211ENST00000569950 THBS2P35442 1172 aa7.86□□□□□ -1.15
VPS35-211ENST00000569950 DDOSTP39656 456 aa7.86□□□□□ -1.15
VPS35-211ENST00000569950 CD200P41217 278 aa7.86□□□□□ -1.15
VPS35-211ENST00000569950 MAP2K3P46734 347 aa7.86□□□□□ -1.15
VPS35-211ENST00000569950 ZNF81P51508 661 aa7.86□□□□□ -1.15
VPS35-211ENST00000569950 TAS2R43P59537 309 aa7.86□□□□□ -1.15
VPS35-211ENST00000569950 SNRPD2P62316 118 aaKnown RBP7.86□□□□□ -1.15
VPS35-211ENST00000569950 RPS25P62851 125 aaKnown RBP7.86□□□□□ -1.15
VPS35-211ENST00000569950 SLC3A1Q07837 685 aa7.86□□□□□ -1.15
VPS35-211ENST00000569950 PRDX4Q13162 271 aa7.86□□□□□ -1.15
VPS35-211ENST00000569950 GPR50Q13585 617 aa7.86□□□□□ -1.15
VPS35-211ENST00000569950 TESK1Q15569 626 aa7.86□□□□□ -1.15
VPS35-211ENST00000569950 NKPD1Q17RQ9 610 aa7.86□□□□□ -1.15
VPS35-211ENST00000569950 DEFB113Q30KQ7 82 aa7.86□□□□□ -1.15
VPS35-211ENST00000569950 FAM76BQ5HYJ3 339 aa7.86□□□□□ -1.15
VPS35-211ENST00000569950 FAM27D1Q5T7N8 215 aa7.86□□□□□ -1.15
VPS35-211ENST00000569950 LIPKQ5VXJ0 399 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms