RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 DNAJB11Q9UBS4 358 aa7.54□□□□□ -1.2
HDDC3-204ENST00000559834 FBLN5Q9UBX5 448 aa7.54□□□□□ -1.2
HDDC3-204ENST00000559834 MAGEL2Q9UJ55 1249 aa7.54□□□□□ -1.2
HDDC3-204ENST00000559834 BAIAP2Q9UQB8 552 aa7.54□□□□□ -1.2
HDDC3-204ENST00000559834 CDH10Q9Y6N8 788 aa7.54□□□□□ -1.2
HDDC3-204ENST00000559834 COMMD3-BMI1R4GMX3 469 aa7.54□□□□□ -1.2
HDDC3-204ENST00000559834 CDIPTO14735 213 aa7.53□□□□□ -1.2
HDDC3-204ENST00000559834 FCN3O75636 299 aa7.53□□□□□ -1.2
HDDC3-204ENST00000559834 TSPAN15O95858 294 aa7.53□□□□□ -1.2
HDDC3-204ENST00000559834 SEMG1P04279 462 aa7.53□□□□□ -1.2
HDDC3-204ENST00000559834 ANXA2P07355 339 aaKnown RBP7.53□□□□□ -1.2
HDDC3-204ENST00000559834 POU1F1P28069 291 aa7.53□□□□□ -1.2
HDDC3-204ENST00000559834 GABRA5P31644 462 aa7.53□□□□□ -1.2
HDDC3-204ENST00000559834 UBE2E1P51965 193 aa7.53□□□□□ -1.2
HDDC3-204ENST00000559834 SLC25A1P53007 311 aa7.53□□□□□ -1.2
HDDC3-204ENST00000559834 EGR3Q06889 387 aa7.53□□□□□ -1.2
HDDC3-204ENST00000559834 ACSM1Q08AH1 577 aa7.53□□□□□ -1.2
HDDC3-204ENST00000559834 IKZF1Q13422 519 aa7.53□□□□□ -1.2
HDDC3-204ENST00000559834 FBLN7Q53RD9 439 aa7.53□□□□□ -1.2
HDDC3-204ENST00000559834 NCR3LG1Q68D85 454 aa7.53□□□□□ -1.2
HDDC3-204ENST00000559834 SLC35E4Q6ICL7 350 aa7.53□□□□□ -1.2
HDDC3-204ENST00000559834 C11orf88Q6PI97 169 aa7.53□□□□□ -1.2
HDDC3-204ENST00000559834 WDR82Q6UXN9 313 aa7.53□□□□□ -1.2
HDDC3-204ENST00000559834 C1QL4Q86Z23 238 aa7.53□□□□□ -1.2
HDDC3-204ENST00000559834 RNF148Q8N7C7 305 aa7.53□□□□□ -1.2
HDDC3-204ENST00000559834 FAM216BQ8N7L0 139 aa7.53□□□□□ -1.2
HDDC3-204ENST00000559834 ZNF511Q8NB15 262 aa7.53□□□□□ -1.2
HDDC3-204ENST00000559834 SLC37A3Q8NCC5 494 aa7.53□□□□□ -1.2
HDDC3-204ENST00000559834 OR51L1Q8NGJ5 315 aa7.53□□□□□ -1.2
HDDC3-204ENST00000559834 C8orf46Q8TAG6 207 aa7.53□□□□□ -1.2
HDDC3-204ENST00000559834 H1FXQ92522 213 aaKnown RBP7.53□□□□□ -1.2
HDDC3-204ENST00000559834 REEP6Q96HR9 211 aa7.53□□□□□ -1.2
HDDC3-204ENST00000559834 PAPOLGQ9BWT3 736 aaKnown RBP7.53□□□□□ -1.2
HDDC3-204ENST00000559834 OR10A2Q9H208 303 aa7.53□□□□□ -1.2
HDDC3-204ENST00000559834 RGCCQ9H4X1 137 aa7.53□□□□□ -1.2
HDDC3-204ENST00000559834 METTL8Q9H825 291 aaKnown RBP7.53□□□□□ -1.2
HDDC3-204ENST00000559834 ABCB9Q9NP78 766 aa7.53□□□□□ -1.2
HDDC3-204ENST00000559834 SIRT7Q9NRC8 400 aa7.53□□□□□ -1.2
HDDC3-204ENST00000559834 HAO2Q9NYQ3 351 aa7.53□□□□□ -1.2
HDDC3-204ENST00000559834 SF3B6Q9Y3B4 125 aaKnown RBP7.53□□□□□ -1.2
HDDC3-204ENST00000559834 DHRS12A0PJE2 317 aa7.52□□□□□ -1.21
HDDC3-204ENST00000559834 MEIOCA2RUB1 952 aa7.52□□□□□ -1.21
HDDC3-204ENST00000559834 NKX6-3A6NJ46 265 aa7.52□□□□□ -1.21
HDDC3-204ENST00000559834 RNASEK-C17orf49H0YIS7 233 aa7.52□□□□□ -1.21
HDDC3-204ENST00000559834 M0R1W7 72 aa7.52□□□□□ -1.21
HDDC3-204ENST00000559834 TNFRSF11BO00300 401 aa7.52□□□□□ -1.21
HDDC3-204ENST00000559834 ACOT8O14734 319 aa7.52□□□□□ -1.21
HDDC3-204ENST00000559834 GASTP01350 101 aa7.52□□□□□ -1.21
HDDC3-204ENST00000559834 IFNGP01579 166 aa7.52□□□□□ -1.21
HDDC3-204ENST00000559834 HSD17B1P14061 328 aa7.52□□□□□ -1.21
HDDC3-204ENST00000559834 CX3CR1P49238 355 aa7.52□□□□□ -1.21
HDDC3-204ENST00000559834 GSK3AP49840 483 aa7.52□□□□□ -1.21
HDDC3-204ENST00000559834 EIF2B1Q14232 305 aaKnown RBP7.52□□□□□ -1.21
HDDC3-204ENST00000559834 HERPUD1Q15011 391 aa7.52□□□□□ -1.21
HDDC3-204ENST00000559834 HSP90B2PQ58FF3 399 aa7.52□□□□□ -1.21
HDDC3-204ENST00000559834 SAMD4BQ5PRF9 694 aaKnown RBP7.52□□□□□ -1.21
HDDC3-204ENST00000559834 LYPD4Q6UWN0 246 aa7.52□□□□□ -1.21
HDDC3-204ENST00000559834 RASSF6Q6ZTQ3 369 aa7.52□□□□□ -1.21
HDDC3-204ENST00000559834 FAM57BQ71RH2 274 aa7.52□□□□□ -1.21
HDDC3-204ENST00000559834 SHFQ7M4L6 423 aa7.52□□□□□ -1.21
HDDC3-204ENST00000559834 TIGD4Q8IY51 512 aa7.52□□□□□ -1.21
HDDC3-204ENST00000559834 PAPD5Q8NDF8 572 aaKnown RBP7.52□□□□□ -1.21
HDDC3-204ENST00000559834 OR5T2Q8NGG2 359 aa7.52□□□□□ -1.21
HDDC3-204ENST00000559834 OR6K6Q8NGW6 343 aa7.52□□□□□ -1.21
HDDC3-204ENST00000559834 OR10Z1Q8NGY1 313 aa7.52□□□□□ -1.21
HDDC3-204ENST00000559834 ZNRF4Q8WWF5 429 aa7.52□□□□□ -1.21
HDDC3-204ENST00000559834 HIST1H2AAQ96QV6 131 aa7.52□□□□□ -1.21
HDDC3-204ENST00000559834 RTL8AQ9BWD3 113 aa7.52□□□□□ -1.21
HDDC3-204ENST00000559834 TSSK6Q9BXA6 273 aa7.52□□□□□ -1.21
HDDC3-204ENST00000559834 TLNRD1Q9H1K6 362 aa7.52□□□□□ -1.21
HDDC3-204ENST00000559834 SEMA6AQ9H2E6 1030 aa7.52□□□□□ -1.21
HDDC3-204ENST00000559834 PPA2Q9H2U2 334 aa7.52□□□□□ -1.21
HDDC3-204ENST00000559834 RAB18Q9NP72 206 aa7.52□□□□□ -1.21
HDDC3-204ENST00000559834 TBC1D23Q9NUY8 699 aa7.52□□□□□ -1.21
HDDC3-204ENST00000559834 SLC25A10Q9UBX3 287 aaPredicted RBP7.52□□□□□ -1.21
HDDC3-204ENST00000559834 ZNF391Q9UJN7 358 aa7.52□□□□□ -1.21
HDDC3-204ENST00000559834 ZNF281Q9Y2X9 895 aa7.52□□□□□ -1.21
HDDC3-204ENST00000559834 MPC1Q9Y5U8 109 aa7.52□□□□□ -1.21
HDDC3-204ENST00000559834 hCG_38984A0A1B0GV85 526 aa7.51□□□□□ -1.21
HDDC3-204ENST00000559834 A0A1B0GW55 424 aa7.51□□□□□ -1.21
HDDC3-204ENST00000559834 A0A1W2PQ09 198 aa7.51□□□□□ -1.21
HDDC3-204ENST00000559834 A0A1W2PRD5 423 aa7.51□□□□□ -1.21
HDDC3-204ENST00000559834 A0A1W2PRF3 423 aa7.51□□□□□ -1.21
HDDC3-204ENST00000559834 A0A1W2PRM7 423 aa7.51□□□□□ -1.21
HDDC3-204ENST00000559834 TMEM210A6NLX4 147 aa7.51□□□□□ -1.21
HDDC3-204ENST00000559834 RIIAD1A6NNX1 92 aa7.51□□□□□ -1.21
HDDC3-204ENST00000559834 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP7.51□□□□□ -1.21
HDDC3-204ENST00000559834 CCNB2O95067 398 aa7.51□□□□□ -1.21
HDDC3-204ENST00000559834 OPN1MWP04001 364 aa7.51□□□□□ -1.21
HDDC3-204ENST00000559834 GYPBP06028 91 aa7.51□□□□□ -1.21
HDDC3-204ENST00000559834 DUX4L2P0CJ85 424 aa7.51□□□□□ -1.21
HDDC3-204ENST00000559834 DUX4L3P0CJ86 424 aa7.51□□□□□ -1.21
HDDC3-204ENST00000559834 DUX4L4P0CJ87 422 aa7.51□□□□□ -1.21
HDDC3-204ENST00000559834 DUX4L5P0CJ88 424 aa7.51□□□□□ -1.21
HDDC3-204ENST00000559834 DUX4L6P0CJ89 424 aa7.51□□□□□ -1.21
HDDC3-204ENST00000559834 DUX4L7P0CJ90 424 aa7.51□□□□□ -1.21
HDDC3-204ENST00000559834 OPN1MW2P0DN77 364 aa7.51□□□□□ -1.21
HDDC3-204ENST00000559834 OPN1MW3P0DN78 364 aa7.51□□□□□ -1.21
HDDC3-204ENST00000559834 NDUFB7P17568 137 aa7.51□□□□□ -1.21
HDDC3-204ENST00000559834 SPI1P17947 270 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms