RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 C17orf51A8MQB3 221 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 FAM166BA8MTA8 275 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 C12orf71A8MTZ7 269 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 J3QRE1 110 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 SLC22A1O15245 554 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 CXCL13O43927 109 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 FCGR3BO75015 233 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 MRPL33O75394 65 aaKnown RBP4.47□□□□□ -1.69
LDLR-209ENST00000558528 SERPINI2O75830 405 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 KRT33AO76009 404 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 ZNF432O94892 652 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 FARS2O95363 451 aaKnown RBP4.47□□□□□ -1.69
LDLR-209ENST00000558528 SLC2A10O95528 541 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 PLGP00747 810 aaPredicted RBP4.47□□□□□ -1.69
LDLR-209ENST00000558528 TGFAP01135 160 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 HLA-DPB1P04440 258 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 KRT8P05787 483 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 YES1P07947 543 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 LAP3P28838 519 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 C21orf33P30042 268 aaPredicted RBP4.47□□□□□ -1.69
LDLR-209ENST00000558528 DCTDP32321 178 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 CSNK1A1P48729 337 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 ENTPD1P49961 510 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 P2RY4P51582 365 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 ZNF133P52736 654 aaPredicted RBP4.47□□□□□ -1.69
LDLR-209ENST00000558528 MLLT10P55197 1068 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 UCP2P55851 309 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 CLDN17P56750 224 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 CLDN18P56856 261 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 LINC00310P59036 64 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 PCBD1P61457 104 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 LSM6P62312 80 aaKnown RBP4.47□□□□□ -1.69
LDLR-209ENST00000558528 TUBA1BP68363 451 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 DLK1P80370 383 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 HOXA4Q00056 320 aaPredicted RBP4.47□□□□□ -1.69
LDLR-209ENST00000558528 SRSF6Q13247 344 aaKnown RBP4.47□□□□□ -1.69
LDLR-209ENST00000558528 TPBGQ13641 420 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 MELKQ14680 651 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 ARMCX4Q5H9R4 360 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 RPL22L1Q6P5R6 122 aaKnown RBP4.47□□□□□ -1.69
LDLR-209ENST00000558528 B3GNT6Q6ZMB0 384 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 TUBA1AQ71U36 451 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 AAED1Q7RTV5 226 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 GGNQ86UU5 652 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 HIST2H2ABQ8IUE6 130 aaPredicted RBP4.47□□□□□ -1.69
LDLR-209ENST00000558528 CLVS1Q8IUQ0 354 aaPredicted RBP4.47□□□□□ -1.69
LDLR-209ENST00000558528 SLC35F2Q8IXU6 374 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 UBQLNLQ8IYU4 475 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 OR6V1Q8N148 313 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 GPR137CQ8N3F9 429 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 CYB561A3Q8NBI2 242 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 OR10H4Q8NGA5 316 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 OR9K2Q8NGE7 335 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 OR6K6Q8NGW6 343 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 OR2AJ1Q8NGZ0 328 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 PHYHIPQ92561 330 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 TMEM54Q969K7 222 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 ITFG2Q969R8 447 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 RASD2Q96D21 266 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 ZFP3Q96NJ6 502 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 TIMP4Q99727 224 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 TTYH2Q9BSA4 534 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 MRPL13Q9BYD1 178 aaKnown RBP4.47□□□□□ -1.69
LDLR-209ENST00000558528 MROQ9BYG7 248 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 LINC00470Q9BZP3 86 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 DEFB127Q9H1M4 99 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 SYT4Q9H2B2 425 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 NIPAL2Q9H841 368 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 MARCH7Q9H992 704 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 CALHM2Q9HA72 323 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 GPN1Q9HCN4 374 aaPredicted RBP4.47□□□□□ -1.69
LDLR-209ENST00000558528 NGBQ9NPG2 151 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 CYSLTR2Q9NS75 346 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 GLTPQ9NZD2 209 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 B3GAT1Q9P2W7 334 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 RABL2AQ9UBK7 228 aaPredicted RBP4.47□□□□□ -1.69
LDLR-209ENST00000558528 SSR3Q9UNL2 185 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 NOSIPQ9Y314 301 aaKnown RBP4.47□□□□□ -1.69
LDLR-209ENST00000558528 SVILO95425 2214 aa4.47□□□□□ -1.69
LDLR-209ENST00000558528 COL27A1Q8IZC6 1860 aaPredicted RBP4.47□□□□□ -1.69
LDLR-209ENST00000558528 TACC2O95359 2948 aa4.46□□□□□ -1.69
LDLR-209ENST00000558528 A0A0G2JMM0 328 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 A0A1B0GWJ7 208 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 A0A1W2PPB8 328 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 A0A1W2PRS3 328 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 CCDC182A6NF36 153 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 METTL15A6NJ78 407 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 ACOD1A6NK06 481 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 KIR3DP1A8MWS1 328 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 B4DXG7 233 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 ZNF593O00488 134 aaPredicted RBP4.46□□□□□ -1.7
LDLR-209ENST00000558528 RRHO14718 337 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 TRAF3IP2O43734 574 aaPredicted RBP4.46□□□□□ -1.7
LDLR-209ENST00000558528 GPRIN2O60269 458 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 WDR1O75083 606 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 OPN1LWP04000 364 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 CRHP06850 196 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 HSMCR30P0CW71 290 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 PGA4P0DJD7 388 aa4.46□□□□□ -1.7
LDLR-209ENST00000558528 PGA3P0DJD8 388 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms