RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 FBXL17Q9UF56 701 aa4.47□□□□□ -1.69
SYNE2-223ENST00000557005 CHRNA9Q9UGM1 479 aa4.47□□□□□ -1.69
SYNE2-223ENST00000557005 SLC5A6Q9Y289 635 aa4.47□□□□□ -1.69
SYNE2-223ENST00000557005 LOC101059948A0A1B0GTJ6 334 aa4.46□□□□□ -1.69
SYNE2-223ENST00000557005 PLSCR5A0PG75 271 aa4.46□□□□□ -1.69
SYNE2-223ENST00000557005 A8MXE2 369 aa4.46□□□□□ -1.69
SYNE2-223ENST00000557005 PTP4A3O75365 173 aa4.46□□□□□ -1.69
SYNE2-223ENST00000557005 HBE1P02100 147 aa4.46□□□□□ -1.69
SYNE2-223ENST00000557005 CA3P07451 260 aa4.46□□□□□ -1.69
SYNE2-223ENST00000557005 METTL15P1P0C7V9 234 aa4.46□□□□□ -1.69
SYNE2-223ENST00000557005 MGST1P10620 155 aaKnown RBP4.46□□□□□ -1.69
SYNE2-223ENST00000557005 IL11P20809 199 aa4.46□□□□□ -1.69
SYNE2-223ENST00000557005 MSR1P21757 451 aa4.46□□□□□ -1.69
SYNE2-223ENST00000557005 NKX2-1P43699 371 aaPredicted RBP4.46□□□□□ -1.69
SYNE2-223ENST00000557005 GALR1P47211 349 aa4.46□□□□□ -1.69
SYNE2-223ENST00000557005 PSMB3P49720 205 aa4.46□□□□□ -1.69
SYNE2-223ENST00000557005 DCAF7P61962 342 aa4.46□□□□□ -1.69
SYNE2-223ENST00000557005 RPL19P84098 196 aaKnown RBP4.46□□□□□ -1.69
SYNE2-223ENST00000557005 TGFBR3Q03167 851 aa4.46□□□□□ -1.69
SYNE2-223ENST00000557005 PLXDC1Q8IUK5 500 aa4.46□□□□□ -1.69
SYNE2-223ENST00000557005 PUSL1Q8N0Z8 303 aaKnown RBP4.46□□□□□ -1.69
SYNE2-223ENST00000557005 IL22RA1Q8N6P7 574 aa4.46□□□□□ -1.69
SYNE2-223ENST00000557005 SLC25A38Q96DW6 304 aa4.46□□□□□ -1.69
SYNE2-223ENST00000557005 LPAR4Q99677 370 aa4.46□□□□□ -1.69
SYNE2-223ENST00000557005 MMP24Q9Y5R2 645 aa4.46□□□□□ -1.69
SYNE2-223ENST00000557005 UBE2L5PA0A1B0GUS4 154 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 MDFIC2A0A1B0GVS7 189 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 XKRY2A2RUG3 117 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 GJE1A6NN92 205 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 ADAM20O43506 726 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 ZNF205O95201 554 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 ZIC2O95409 532 aaPredicted RBP4.46□□□□□ -1.7
SYNE2-223ENST00000557005 CST4P01036 141 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 THY1P04216 161 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 CD63P08962 238 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 ICAM2P13598 275 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 ST6GAL1P15907 406 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 BMP5P22003 454 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 OR2B11Q5JQS5 317 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 PRSS54Q6PEW0 395 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 LHFPL2Q6ZUX7 228 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 GRINAQ7Z429 371 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 BAGE3Q86Y29 109 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 BAGE2Q86Y30 109 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 RLN3Q8WXF3 142 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 ASB10Q8WXI3 467 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 RPUSD4Q96CM3 377 aaKnown RBP4.46□□□□□ -1.7
SYNE2-223ENST00000557005 AP1S3Q96PC3 154 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 OR6C1Q96RD1 312 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 UBL7Q96S82 380 aaPredicted RBP4.46□□□□□ -1.7
SYNE2-223ENST00000557005 ZNF426Q9BUY5 554 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 ULBP2Q9BZM5 246 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 OR51I2Q9H344 312 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 MMP25Q9NPA2 562 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 ABI3Q9P2A4 366 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 SLC17A4Q9Y2C5 497 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 DTX4Q9Y2E6 619 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 V9GYS6 101 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 TGIF2-C20orf24A0A0A6YYL0 155 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 DNASE2O00115 360 aaPredicted RBP4.46□□□□□ -1.7
SYNE2-223ENST00000557005 HMGB3O15347 200 aaKnown RBP4.46□□□□□ -1.7
SYNE2-223ENST00000557005 BCAT2O15382 392 aaPredicted RBP4.46□□□□□ -1.7
SYNE2-223ENST00000557005 RAB5AP20339 215 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 DYNLT3P51808 116 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 RPP30P78346 268 aaKnown RBP4.46□□□□□ -1.7
SYNE2-223ENST00000557005 JMJD6Q6NYC1 403 aaPredicted RBP4.46□□□□□ -1.7
SYNE2-223ENST00000557005 RBMS3Q6XE24 437 aaKnown RBP4.46□□□□□ -1.7
SYNE2-223ENST00000557005 MRGPREQ86SM8 312 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 OR51H1Q8NH63 302 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 RPS4Y2Q8TD47 263 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 ESRP2Q9H6T0 727 aaKnown RBP4.46□□□□□ -1.7
SYNE2-223ENST00000557005 PARD6AQ9NPB6 346 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 SUSD2Q9UGT4 822 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 IGKV1-8A0A0C4DH67 115 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 FAM24AA6NFZ4 105 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 HSPB2A8KAH6 182 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 MPTX1A8MV57 137 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 PHOX2AO14813 284 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 CLN5O75503 358 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 OR7C1O76099 320 aaPredicted RBP4.46□□□□□ -1.7
SYNE2-223ENST00000557005 TK1P04183 234 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 GUSBP08236 651 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 SMIM6P0DI80 62 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 MYF5P13349 255 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 HIST1H1DP16402 221 aaKnown RBP4.46□□□□□ -1.7
SYNE2-223ENST00000557005 GDF1P27539 372 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 RPS15P62841 145 aaKnown RBP4.46□□□□□ -1.7
SYNE2-223ENST00000557005 DLK1P80370 383 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 FOXF1Q12946 379 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 TGIF1Q15583 401 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 HSPB2Q16082 182 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 TSPO2Q5TGU0 170 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 CD200R1LQ6Q8B3 271 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 C19orf48Q6RUI8 117 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 C6orf201Q7Z4U5 140 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 NR2C2APQ86WQ0 139 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 DTWD2Q8NBA8 298 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 TMEM52Q8NDY8 209 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 GPX8Q8TED1 209 aa4.46□□□□□ -1.7
SYNE2-223ENST00000557005 C11orf40Q8WZ69 217 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms