RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 JKAMPQ9P055 326 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 CKLFQ9UBR5 152 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 FOXJ3Q9UPW0 622 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 DHDHQ9UQ10 334 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 KLHDC2Q9Y2U9 406 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 N6AMT1Q9Y5N5 214 aa4.34□□□□□ -1.71
VTI1B-202ENST00000553619 SHANK1Q9Y566 2161 aa4.34□□□□□ -1.72
VTI1B-202ENST00000553619 CACNA1BQ00975 2339 aa4.34□□□□□ -1.72
VTI1B-202ENST00000553619 TRBV5-5A0A0J9YX44 114 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 C5orf49A4QMS7 147 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 DHRS7CA6NNS2 312 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 H3BMQ9 156 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 LRRTM2O43300 516 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 GPX5O75715 221 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 SC5DO75845 299 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 ZFPL1O95159 310 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 CDRT1O95170 752 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 PNPP00491 289 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 IGKV3-15P01624 115 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 CRYAAP02489 173 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 TTRP02766 147 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 ERCC1P07992 297 aaPredicted RBP4.33□□□□□ -1.72
VTI1B-202ENST00000553619 UCHL1P09936 223 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 PATE4P0C8F1 98 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 OCMP0CE72 109 aaPredicted RBP4.33□□□□□ -1.72
VTI1B-202ENST00000553619 ZNF182P17025 639 aaPredicted RBP4.33□□□□□ -1.72
VTI1B-202ENST00000553619 SRMP19623 302 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 CRYGSP22914 178 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 PTAFRP25105 342 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 PCSK6P29122 969 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 MTNR1BP49286 362 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 CAPZA1P52907 286 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 SELENOVP59797 346 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 NANOS3P60323 173 aaKnown RBP4.33□□□□□ -1.72
VTI1B-202ENST00000553619 VBP1P61758 197 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 LSM3P62310 102 aaKnown RBP4.33□□□□□ -1.72
VTI1B-202ENST00000553619 RPS25P62851 125 aaKnown RBP4.33□□□□□ -1.72
VTI1B-202ENST00000553619 FABP5Q01469 135 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 TLE1Q04724 770 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 FAM27E3Q08E93 113 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 RIPPLY1Q0D2K3 151 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 FOXL1Q12952 345 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 CTF1Q16619 201 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 MOGQ16653 247 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 RSPO1Q2MKA7 263 aaPredicted RBP4.33□□□□□ -1.72
VTI1B-202ENST00000553619 KRTAP27-1Q3LI81 207 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 ZNF718Q3SXZ3 478 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 FBXL19-AS1Q494R0 122 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 HSD17B12Q53GQ0 312 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 OTPQ5XKR4 325 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 GLT8D1Q68CQ7 371 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 C22orf42Q6IC83 251 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 MZT2AQ6P582 158 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 TMEM108Q6UXF1 575 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 CDH26Q8IXH8 852 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 PRSS35Q8N3Z0 413 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 FTMTQ8N4E7 242 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 RPRMLQ8N4K4 120 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 RFLNBQ8N5W9 214 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 WDR31Q8NA23 367 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 CPEB3Q8NE35 698 aaKnown RBP4.33□□□□□ -1.72
VTI1B-202ENST00000553619 CSNK2A3Q8NEV1 391 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 SLC30A7Q8NEW0 376 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 OR5AN1Q8NGI8 311 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 OR13C3Q8NGS6 347 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 FGFBP3Q8TAT2 258 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 PP6455Q8WZ26 134 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 AP3S1Q92572 193 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 RNASE6Q93091 150 aaKnown RBP4.33□□□□□ -1.72
VTI1B-202ENST00000553619 TMEM106AQ96A25 262 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 CPNE2Q96FN4 548 aaPredicted RBP4.33□□□□□ -1.72
VTI1B-202ENST00000553619 RADILQ96JH8 1075 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 POM121L2Q96KW2 1035 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 PGLYRP3Q96LB9 341 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 TECTBQ96PL2 329 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 HIST1H2AAQ96QV6 131 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 PDCD1LG2Q9BQ51 273 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 BCL2L14Q9BZR8 327 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 ACTR6Q9GZN1 396 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 RBM38Q9H0Z9 239 aaKnown RBP4.33□□□□□ -1.72
VTI1B-202ENST00000553619 DCSTAMPQ9H295 470 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 PLEKHA1Q9HB21 404 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 ZNF275Q9NSD4 429 aaPredicted RBP4.33□□□□□ -1.72
VTI1B-202ENST00000553619 SNTG1Q9NSN8 517 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 ZNF224Q9NZL3 707 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 CRNNQ9UBG3 495 aaPredicted RBP4.33□□□□□ -1.72
VTI1B-202ENST00000553619 SLC25A15Q9Y619 301 aa4.33□□□□□ -1.72
VTI1B-202ENST00000553619 SIRT4Q9Y6E7 314 aaPredicted RBP4.33□□□□□ -1.72
VTI1B-202ENST00000553619 TPRP12270 2363 aaKnown RBP4.33□□□□□ -1.72
VTI1B-202ENST00000553619 RTTNQ86VV8 2226 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 LOC100509620A0A075B734 347 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 LOC107986453A0A1B0GWG9 222 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 GGT3PA6NGU5 568 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 TRIM64BA6NI03 449 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 ANXA2P2A6NMY6 339 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 PRR32B1ATL7 298 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 P2RY10O00398 339 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 DHRS3O75911 302 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 CLDN14O95500 239 aa4.32□□□□□ -1.72
VTI1B-202ENST00000553619 IGLV1-44P01699 117 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms