RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 MPV17P39210 176 aa8.19□□□□□ -1.1
LIMA1-211ENST00000552338 MTNR1BP49286 362 aa8.19□□□□□ -1.1
LIMA1-211ENST00000552338 ERVS71-1P61550 626 aa8.19□□□□□ -1.1
LIMA1-211ENST00000552338 TLE4Q04727 773 aa8.19□□□□□ -1.1
LIMA1-211ENST00000552338 SNTB1Q13884 538 aaKnown RBP8.19□□□□□ -1.1
LIMA1-211ENST00000552338 SWI5Q1ZZU3 235 aa8.19□□□□□ -1.1
LIMA1-211ENST00000552338 MST1LQ2TV78 715 aa8.19□□□□□ -1.1
LIMA1-211ENST00000552338 CLVS2Q5SYC1 327 aa8.19□□□□□ -1.1
LIMA1-211ENST00000552338 GPR107Q5VW38 600 aa8.19□□□□□ -1.1
LIMA1-211ENST00000552338 MRPL21Q7Z2W9 205 aaKnown RBP8.19□□□□□ -1.1
LIMA1-211ENST00000552338 CEACAM19Q7Z692 300 aa8.19□□□□□ -1.1
LIMA1-211ENST00000552338 DTX2Q86UW9 622 aa8.19□□□□□ -1.1
LIMA1-211ENST00000552338 SPERTQ8NA61 448 aa8.19□□□□□ -1.1
LIMA1-211ENST00000552338 OR56B2PQ8NGI1 322 aa8.19□□□□□ -1.1
LIMA1-211ENST00000552338 OR13C3Q8NGS6 347 aa8.19□□□□□ -1.1
LIMA1-211ENST00000552338 OR13C5Q8NGS8 318 aa8.19□□□□□ -1.1
LIMA1-211ENST00000552338 IGFBPL1Q8WX77 278 aa8.19□□□□□ -1.1
LIMA1-211ENST00000552338 TMEM203Q969S6 136 aa8.19□□□□□ -1.1
LIMA1-211ENST00000552338 ISOC1Q96CN7 298 aa8.19□□□□□ -1.1
LIMA1-211ENST00000552338 KCTD7Q96MP8 289 aa8.19□□□□□ -1.1
LIMA1-211ENST00000552338 OR14A2Q96R54 314 aa8.19□□□□□ -1.1
LIMA1-211ENST00000552338 PLK3Q9H4B4 646 aa8.19□□□□□ -1.1
LIMA1-211ENST00000552338 NOX4Q9NPH5 578 aa8.19□□□□□ -1.1
LIMA1-211ENST00000552338 CYSLTR2Q9NS75 346 aa8.19□□□□□ -1.1
LIMA1-211ENST00000552338 NKIRAS2Q9NYR9 191 aa8.19□□□□□ -1.1
LIMA1-211ENST00000552338 CISD1Q9NZ45 108 aaKnown RBP8.19□□□□□ -1.1
LIMA1-211ENST00000552338 PTTG3PQ9NZH4 202 aa8.19□□□□□ -1.1
LIMA1-211ENST00000552338 GTF2A1LQ9UNN4 478 aa8.19□□□□□ -1.1
LIMA1-211ENST00000552338 NOP16Q9Y3C1 178 aaKnown RBP8.19□□□□□ -1.1
LIMA1-211ENST00000552338 MYO18BQ8IUG5 2567 aa8.18□□□□□ -1.1
LIMA1-211ENST00000552338 A0A1W2PPR1 153 aa8.18□□□□□ -1.1
LIMA1-211ENST00000552338 SHISA3A0PJX4 238 aa8.18□□□□□ -1.1
LIMA1-211ENST00000552338 GGT3PA6NGU5 568 aa8.18□□□□□ -1.1
LIMA1-211ENST00000552338 B9A039 149 aa8.18□□□□□ -1.1
LIMA1-211ENST00000552338 PLAUP00749 431 aa8.18□□□□□ -1.1
LIMA1-211ENST00000552338 IL1AP01583 271 aa8.18□□□□□ -1.1
LIMA1-211ENST00000552338 CD55P08174 381 aa8.18□□□□□ -1.1
LIMA1-211ENST00000552338 DANCRP0C864 163 aa8.18□□□□□ -1.1
LIMA1-211ENST00000552338 MAGEB1P43366 347 aa8.18□□□□□ -1.1
LIMA1-211ENST00000552338 PSMD7P51665 324 aa8.18□□□□□ -1.1
LIMA1-211ENST00000552338 KLF3P57682 345 aaPredicted RBP8.18□□□□□ -1.1
LIMA1-211ENST00000552338 SELENOVP59797 346 aa8.18□□□□□ -1.1
LIMA1-211ENST00000552338 INSL4Q14641 139 aa8.18□□□□□ -1.1
LIMA1-211ENST00000552338 HLXQ14774 488 aaPredicted RBP8.18□□□□□ -1.1
LIMA1-211ENST00000552338 UBE2V2Q15819 145 aa8.18□□□□□ -1.1
LIMA1-211ENST00000552338 ODF4Q2M2E3 257 aa8.18□□□□□ -1.1
LIMA1-211ENST00000552338 HSD17B12Q53GQ0 312 aa8.18□□□□□ -1.1
LIMA1-211ENST00000552338 CEP78Q5JTW2 689 aa8.18□□□□□ -1.1
LIMA1-211ENST00000552338 CRIP3Q6Q6R5 217 aa8.18□□□□□ -1.1
LIMA1-211ENST00000552338 LRRTM1Q86UE6 522 aa8.18□□□□□ -1.1
LIMA1-211ENST00000552338 CLVS1Q8IUQ0 354 aaPredicted RBP8.18□□□□□ -1.1
LIMA1-211ENST00000552338 OR5AS1Q8N127 324 aa8.18□□□□□ -1.1
LIMA1-211ENST00000552338 CELF2-AS1Q8N7Q2 184 aa8.18□□□□□ -1.1
LIMA1-211ENST00000552338 ZNF611Q8N823 705 aa8.18□□□□□ -1.1
LIMA1-211ENST00000552338 KBTBD8Q8NFY9 601 aa8.18□□□□□ -1.1
LIMA1-211ENST00000552338 OR5A2Q8NGI9 324 aa8.18□□□□□ -1.1
LIMA1-211ENST00000552338 RPL3LQ92901 407 aaKnown RBP8.18□□□□□ -1.1
LIMA1-211ENST00000552338 SPSB1Q96BD6 273 aa8.18□□□□□ -1.1
LIMA1-211ENST00000552338 FGGYQ96C11 551 aa8.18□□□□□ -1.1
LIMA1-211ENST00000552338 PIK3IP1Q96FE7 263 aa8.18□□□□□ -1.1
LIMA1-211ENST00000552338 FAM71F1Q96KD3 344 aaPredicted RBP8.18□□□□□ -1.1
LIMA1-211ENST00000552338 CHCHD6Q9BRQ6 235 aa8.18□□□□□ -1.1
LIMA1-211ENST00000552338 CENPOQ9BU64 300 aa8.18□□□□□ -1.1
LIMA1-211ENST00000552338 MRPL37Q9BZE1 423 aaKnown RBP8.18□□□□□ -1.1
LIMA1-211ENST00000552338 NAA50Q9GZZ1 169 aaKnown RBP8.18□□□□□ -1.1
LIMA1-211ENST00000552338 SNTG1Q9NSN8 517 aa8.18□□□□□ -1.1
LIMA1-211ENST00000552338 PIGLQ9Y2B2 252 aa8.18□□□□□ -1.1
LIMA1-211ENST00000552338 RHBDD3Q9Y3P4 386 aa8.18□□□□□ -1.1
LIMA1-211ENST00000552338 ATP23Q9Y6H3 246 aa8.18□□□□□ -1.1
LIMA1-211ENST00000552338 DOPEY2Q9Y3R5 2298 aa8.18□□□□□ -1.1
LIMA1-211ENST00000552338 TANC2Q9HCD6 1990 aa8.17□□□□□ -1.1
LIMA1-211ENST00000552338 IGKV1-9A0A0C4DH69 117 aa8.17□□□□□ -1.1
LIMA1-211ENST00000552338 H3BMQ9 156 aa8.17□□□□□ -1.1
LIMA1-211ENST00000552338 HS3ST1O14792 307 aa8.17□□□□□ -1.1
LIMA1-211ENST00000552338 SULT1B1O43704 296 aa8.17□□□□□ -1.1
LIMA1-211ENST00000552338 LMX1BO60663 402 aa8.17□□□□□ -1.1
LIMA1-211ENST00000552338 NRASP01111 189 aa8.17□□□□□ -1.1
LIMA1-211ENST00000552338 ACAA1P09110 424 aaPredicted RBP8.17□□□□□ -1.1
LIMA1-211ENST00000552338 FAHP16930 419 aa8.17□□□□□ -1.1
LIMA1-211ENST00000552338 ATF1P18846 271 aa8.17□□□□□ -1.1
LIMA1-211ENST00000552338 SERPINF1P36955 418 aa8.17□□□□□ -1.1
LIMA1-211ENST00000552338 ALDH3B1P43353 468 aa8.17□□□□□ -1.1
LIMA1-211ENST00000552338 RANBP1P43487 201 aa8.17□□□□□ -1.1
LIMA1-211ENST00000552338 FABP6P51161 128 aa8.17□□□□□ -1.1
LIMA1-211ENST00000552338 DYNC1I2Q13409 638 aaKnown RBP8.17□□□□□ -1.1
LIMA1-211ENST00000552338 CEACAM21Q3KPI0 293 aa8.17□□□□□ -1.1
LIMA1-211ENST00000552338 ALKBH6Q3KRA9 238 aa8.17□□□□□ -1.1
LIMA1-211ENST00000552338 FAM209AQ5JX71 171 aa8.17□□□□□ -1.1
LIMA1-211ENST00000552338 FAM27D1Q5T7N8 215 aa8.17□□□□□ -1.1
LIMA1-211ENST00000552338 FOXB2Q5VYV0 432 aa8.17□□□□□ -1.1
LIMA1-211ENST00000552338 C22orf42Q6IC83 251 aa8.17□□□□□ -1.1
LIMA1-211ENST00000552338 OR2T2Q6IF00 324 aa8.17□□□□□ -1.1
LIMA1-211ENST00000552338 C11orf71Q6IPW1 123 aa8.17□□□□□ -1.1
LIMA1-211ENST00000552338 FAM166AQ6J272 317 aa8.17□□□□□ -1.1
LIMA1-211ENST00000552338 Q6ZR03 302 aa8.17□□□□□ -1.1
LIMA1-211ENST00000552338 CROCCP3Q8IVE0 287 aa8.17□□□□□ -1.1
LIMA1-211ENST00000552338 ZNF295-AS1Q8N0V1 137 aa8.17□□□□□ -1.1
LIMA1-211ENST00000552338 NKAIN3Q8N8D7 197 aa8.17□□□□□ -1.1
LIMA1-211ENST00000552338 OR13G1Q8NGZ3 307 aa8.17□□□□□ -1.1
LIMA1-211ENST00000552338 TSEN15Q8WW01 171 aaKnown RBP8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms