RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 CTSLP07711 333 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 CISD3P0C7P0 127 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 VSIG10L2P0DP72 767 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 NR2C1P13056 603 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 ZNF93P35789 620 aaPredicted RBP4.9□□□□□ -1.63
LIMA1-203ENST00000547825 EMDP50402 254 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 EFNB2P52799 333 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 RAP1AP62834 184 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 RPS21P63220 83 aaKnown RBP4.9□□□□□ -1.63
LIMA1-203ENST00000547825 RNF212Q495C1 297 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 CST9LP1Q5W188 147 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 ZNF776Q68DI1 518 aaPredicted RBP4.9□□□□□ -1.63
LIMA1-203ENST00000547825 GLIPR1L1Q6UWM5 242 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 FAM57BQ71RH2 274 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 DCXRQ7Z4W1 244 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 ZNF695Q8IW36 515 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 FAM71CQ8NEG0 241 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 OR9K2Q8NGE7 335 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 CCL4L1Q8NHW4 92 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 SGK3Q96BR1 496 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 NICN1Q9BSH3 213 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 WWTR1Q9GZV5 400 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 LANCL2Q9NS86 450 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 MED9Q9NWA0 146 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 PRODH2Q9UF12 536 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 KCNS2Q9ULS6 477 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 ETV7Q9Y603 341 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 SPTBN1Q01082 2364 aaKnown RBP4.89□□□□□ -1.63
LIMA1-203ENST00000547825 BHLHE40O14503 412 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 ABCD4O14678 606 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 CYB5BO43169 146 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 XRCC3O43542 346 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 ALOX12BO75342 701 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 GLSO94925 669 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-203ENST00000547825 YIF1AO95070 293 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 RPS2P15880 293 aaKnown RBP4.89□□□□□ -1.63
LIMA1-203ENST00000547825 PGCP20142 388 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 CASRP41180 1078 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 NPBWR1P48145 328 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 H2BFSP57053 126 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 SOX8P57073 446 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 TAS2R31P59538 309 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 TRA2BP62995 288 aaKnown RBP4.89□□□□□ -1.63
LIMA1-203ENST00000547825 HSD11B2P80365 405 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 ZNF85Q03923 595 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 KLF9Q13886 244 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-203ENST00000547825 ZNF239Q16600 458 aaKnown RBP4.89□□□□□ -1.63
LIMA1-203ENST00000547825 TMEM244Q5VVB8 128 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 OR2A2Q6IF42 318 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 RGS7BPQ6MZT1 257 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-203ENST00000547825 RBMS3Q6XE24 437 aaKnown RBP4.89□□□□□ -1.63
LIMA1-203ENST00000547825 ETV3LQ6ZN32 361 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 DPY19L2P2Q6ZN68 376 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 MED25Q71SY5 747 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 TMEM151BQ8IW70 566 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 OR5L1Q8NGL2 311 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 OR2A1Q8NGT9 310 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 OR51Q1Q8NH59 317 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 IL1F10Q8WWZ1 152 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 PNPLA2Q96AD5 504 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 CLCC1Q96S66 551 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 LYSMD1Q96S90 227 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 PRRG4Q9BZD6 226 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 MAGT1Q9H0U3 335 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 ANKRD19PQ9H560 264 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 PATZ1Q9HBE1 687 aaKnown RBP4.89□□□□□ -1.63
LIMA1-203ENST00000547825 UQCC1Q9NVA1 299 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 GAR1Q9NY12 217 aaKnown RBP4.89□□□□□ -1.63
LIMA1-203ENST00000547825 MTFP1Q9UDX5 166 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 KCND3Q9UK17 655 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 NXT1Q9UKK6 140 aaKnown RBP4.89□□□□□ -1.63
LIMA1-203ENST00000547825 TMED7Q9Y3B3 224 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 NBEAQ8NFP9 2946 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 ABCA1O95477 2261 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 NBASA2RRP1 2371 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 TRAV8-7A0A075B6U6 113 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 TRAV1-2A0A0B4J238 106 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 LOC107986453A0A1B0GWG9 222 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 A6NCN8 305 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 SERINC4A6NH21 518 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 LINC00587B1AMM8 73 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 K7EQS6 105 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 F2RL2O00254 374 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 SEC14L5O43304 696 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 CD37P11049 281 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 RPL23AP62750 156 aaKnown RBP4.89□□□□□ -1.63
LIMA1-203ENST00000547825 BDH1Q02338 343 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 RPL7L1Q6DKI1 246 aaKnown RBP4.89□□□□□ -1.63
LIMA1-203ENST00000547825 OR2T2Q6IF00 324 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 PRSS41Q7RTY9 318 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 CAMKMTQ7Z624 323 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 EID2Q8N6I1 236 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 ZFP62Q8NB50 900 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-203ENST00000547825 OR4C3Q8NH37 302 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 GPR119Q8TDV5 335 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 PIGTQ969N2 578 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 KIRREL1Q96J84 757 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 HIST1H2AAQ96QV6 131 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 TIMP4Q99727 224 aa4.89□□□□□ -1.63
LIMA1-203ENST00000547825 NIPSNAP3BQ9BS92 247 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms