RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 PGA4P0DJD7 388 aa12.13□□□□□ -0.47
VPS33A-208ENST00000543633 PGA3P0DJD8 388 aa12.13□□□□□ -0.47
VPS33A-208ENST00000543633 RPS2P15880 293 aaKnown RBP12.13□□□□□ -0.47
VPS33A-208ENST00000543633 CD27P26842 260 aa12.13□□□□□ -0.47
VPS33A-208ENST00000543633 SULT1A2P50226 295 aa12.13□□□□□ -0.47
VPS33A-208ENST00000543633 NPY4RP50391 375 aa12.13□□□□□ -0.47
VPS33A-208ENST00000543633 TMEM50BP56557 158 aa12.13□□□□□ -0.47
VPS33A-208ENST00000543633 GRB2P62993 217 aaKnown RBP12.13□□□□□ -0.47
VPS33A-208ENST00000543633 ZNF239Q16600 458 aaKnown RBP12.13□□□□□ -0.47
VPS33A-208ENST00000543633 ANKRD55Q3KP44 614 aa12.13□□□□□ -0.47
VPS33A-208ENST00000543633 PLXDC1Q8IUK5 500 aa12.13□□□□□ -0.47
VPS33A-208ENST00000543633 UEVLDQ8IX04 471 aa12.13□□□□□ -0.47
VPS33A-208ENST00000543633 PNLDC1Q8NA58 520 aaKnown RBP12.13□□□□□ -0.47
VPS33A-208ENST00000543633 TMEM104Q8NE00 496 aa12.13□□□□□ -0.47
VPS33A-208ENST00000543633 CCDC54Q8NEL0 328 aa12.13□□□□□ -0.47
VPS33A-208ENST00000543633 OR2I1PQ8NGU4 316 aa12.13□□□□□ -0.47
VPS33A-208ENST00000543633 OR13G1Q8NGZ3 307 aa12.13□□□□□ -0.47
VPS33A-208ENST00000543633 OR5B2Q96R09 309 aa12.13□□□□□ -0.47
VPS33A-208ENST00000543633 OR10A2Q9H208 303 aa12.13□□□□□ -0.47
VPS33A-208ENST00000543633 RHOFQ9HBH0 211 aa12.13□□□□□ -0.47
VPS33A-208ENST00000543633 PARP11Q9NR21 331 aa12.13□□□□□ -0.47
VPS33A-208ENST00000543633 SLCO1B1Q9Y6L6 691 aa12.13□□□□□ -0.47
VPS33A-208ENST00000543633 ALPK2Q86TB3 2170 aa12.12□□□□□ -0.47
VPS33A-208ENST00000543633 FOXI3A8MTJ6 420 aaPredicted RBP12.12□□□□□ -0.47
VPS33A-208ENST00000543633 SERPINE3A8MV23 424 aa12.12□□□□□ -0.47
VPS33A-208ENST00000543633 BCKDHBP21953 392 aa12.12□□□□□ -0.47
VPS33A-208ENST00000543633 OR3A4PP47883 348 aa12.12□□□□□ -0.47
VPS33A-208ENST00000543633 OR3A2P47893 321 aa12.12□□□□□ -0.47
VPS33A-208ENST00000543633 NPBWR1P48145 328 aa12.12□□□□□ -0.47
VPS33A-208ENST00000543633 AKR1C2P52895 323 aa12.12□□□□□ -0.47
VPS33A-208ENST00000543633 CLRN1P58418 232 aa12.12□□□□□ -0.47
VPS33A-208ENST00000543633 B2MP61769 119 aa12.12□□□□□ -0.47
VPS33A-208ENST00000543633 AKR1C1Q04828 323 aa12.12□□□□□ -0.47
VPS33A-208ENST00000543633 SLC9A3R2Q15599 337 aa12.12□□□□□ -0.47
VPS33A-208ENST00000543633 HMGN3Q15651 99 aa12.12□□□□□ -0.47
VPS33A-208ENST00000543633 AADACL3Q5VUY0 350 aa12.12□□□□□ -0.47
VPS33A-208ENST00000543633 SLC25A47Q6Q0C1 308 aa12.12□□□□□ -0.47
VPS33A-208ENST00000543633 TMPPEQ6ZT21 453 aa12.12□□□□□ -0.47
VPS33A-208ENST00000543633 ABHD12BQ7Z5M8 362 aaPredicted RBP12.12□□□□□ -0.47
VPS33A-208ENST00000543633 GLYATL2Q8WU03 294 aa12.12□□□□□ -0.47
VPS33A-208ENST00000543633 MICU1Q9BPX6 476 aa12.12□□□□□ -0.47
VPS33A-208ENST00000543633 IFT22Q9H7X7 185 aa12.12□□□□□ -0.47
VPS33A-208ENST00000543633 COA4Q9NYJ1 87 aa12.12□□□□□ -0.47
VPS33A-208ENST00000543633 RRP8O43159 456 aaKnown RBP12.11□□□□□ -0.47
VPS33A-208ENST00000543633 ADAP1O75689 374 aa12.11□□□□□ -0.47
VPS33A-208ENST00000543633 RAD51DO75771 328 aa12.11□□□□□ -0.47
VPS33A-208ENST00000543633 CST4P01036 141 aa12.11□□□□□ -0.47
VPS33A-208ENST00000543633 HCKP08631 526 aa12.11□□□□□ -0.47
VPS33A-208ENST00000543633 NR2C1P13056 603 aa12.11□□□□□ -0.47
VPS33A-208ENST00000543633 CTSSP25774 331 aa12.11□□□□□ -0.47
VPS33A-208ENST00000543633 ADH6P28332 368 aa12.11□□□□□ -0.47
VPS33A-208ENST00000543633 ZNF121P58317 390 aaPredicted RBP12.11□□□□□ -0.47
VPS33A-208ENST00000543633 HNRNPKP61978 463 aaKnown RBP eCLIP12.11□□□□□ -0.47
VPS33A-208ENST00000543633 GABREP78334 506 aa12.11□□□□□ -0.47
VPS33A-208ENST00000543633 ECH1Q13011 328 aa12.11□□□□□ -0.47
VPS33A-208ENST00000543633 RAB32Q13637 225 aa12.11□□□□□ -0.47
VPS33A-208ENST00000543633 ARFRP1Q13795 201 aa12.11□□□□□ -0.47
VPS33A-208ENST00000543633 GFOD2Q3B7J2 385 aa12.11□□□□□ -0.47
VPS33A-208ENST00000543633 OR6X1Q8NH79 312 aa12.11□□□□□ -0.47
VPS33A-208ENST00000543633 TM2D1Q9BX74 207 aa12.11□□□□□ -0.47
VPS33A-208ENST00000543633 PCED1AQ9H1Q7 454 aa12.11□□□□□ -0.47
VPS33A-208ENST00000543633 METTL8Q9H825 291 aaKnown RBP12.11□□□□□ -0.47
VPS33A-208ENST00000543633 GPR84Q9NQS5 396 aa12.11□□□□□ -0.47
VPS33A-208ENST00000543633 C1orf123Q9NWV4 160 aa12.11□□□□□ -0.47
VPS33A-208ENST00000543633 IGHV1OR21-1A0A087WYE8 117 aa12.11□□□□□ -0.47
VPS33A-208ENST00000543633 DUX1O43812 170 aa12.11□□□□□ -0.47
VPS33A-208ENST00000543633 FBXO24O75426 580 aa12.11□□□□□ -0.47
VPS33A-208ENST00000543633 IGLV3-1P01715 115 aa12.11□□□□□ -0.47
VPS33A-208ENST00000543633 CD5P06127 495 aa12.11□□□□□ -0.47
VPS33A-208ENST00000543633 MUC1P15941 1255 aaPredicted RBP12.11□□□□□ -0.47
VPS33A-208ENST00000543633 THBS4P35443 961 aa12.11□□□□□ -0.47
VPS33A-208ENST00000543633 P2RY4P51582 365 aa12.11□□□□□ -0.47
VPS33A-208ENST00000543633 ZNF41P51814 821 aaPredicted RBP12.11□□□□□ -0.47
VPS33A-208ENST00000543633 F2RL1P55085 397 aa12.11□□□□□ -0.47
VPS33A-208ENST00000543633 SRSF3P84103 164 aaKnown RBP12.11□□□□□ -0.47
VPS33A-208ENST00000543633 TMEM268Q5VZI3 342 aa12.11□□□□□ -0.47
VPS33A-208ENST00000543633 OPN5Q6U736 354 aa12.11□□□□□ -0.47
VPS33A-208ENST00000543633 BTNL8Q6UX41 500 aa12.11□□□□□ -0.47
VPS33A-208ENST00000543633 LANCL3Q6ZV70 420 aa12.11□□□□□ -0.47
VPS33A-208ENST00000543633 COMMD1Q8N668 190 aa12.11□□□□□ -0.47
VPS33A-208ENST00000543633 DEFB123Q8N688 67 aa12.11□□□□□ -0.47
VPS33A-208ENST00000543633 ARHGAP5-AS1Q96IT6 56 aa12.11□□□□□ -0.47
VPS33A-208ENST00000543633 OR10C1Q96KK4 312 aa12.11□□□□□ -0.47
VPS33A-208ENST00000543633 SEC61A2Q9H9S3 476 aa12.11□□□□□ -0.47
VPS33A-208ENST00000543633 TAF9BQ9HBM6 251 aa12.11□□□□□ -0.47
VPS33A-208ENST00000543633 PNRC2Q9NPJ4 139 aaKnown RBP12.11□□□□□ -0.47
VPS33A-208ENST00000543633 SDHAF3Q9NRP4 125 aa12.11□□□□□ -0.47
VPS33A-208ENST00000543633 ASH2LQ9UBL3 628 aa12.11□□□□□ -0.47
VPS33A-208ENST00000543633 ATPIF1Q9UII2 106 aa12.11□□□□□ -0.47
VPS33A-208ENST00000543633 C14orf166Q9Y224 244 aaKnown RBP12.11□□□□□ -0.47
VPS33A-208ENST00000543633 PCDH15Q96QU1 1955 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 IGLV3-12A0A075B6K2 115 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 IGHV1OR15-9A0A0B4J2B8 117 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 TRAF3IP2O43734 574 aaPredicted RBP12.1□□□□□ -0.47
VPS33A-208ENST00000543633 ZNF354AO60765 605 aaPredicted RBP12.1□□□□□ -0.47
VPS33A-208ENST00000543633 CRTAPO75718 401 aaPredicted RBP12.1□□□□□ -0.47
VPS33A-208ENST00000543633 APOC1P02654 83 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 NAT2P11245 290 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 FBXW4P57775 412 aa12.1□□□□□ -0.47
VPS33A-208ENST00000543633 CSNK2A1P68400 391 aaPredicted RBP12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms