RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 PLXNB1O43157 2135 aa11.12□□□□□ -0.63
SS18-204ENST00000539244 hCG_38984A0A1B0GV85 526 aa11.11□□□□□ -0.63
SS18-204ENST00000539244 ZNF593O00488 134 aaPredicted RBP11.11□□□□□ -0.63
SS18-204ENST00000539244 FABP3P05413 133 aa11.11□□□□□ -0.63
SS18-204ENST00000539244 SPARCP09486 303 aa11.11□□□□□ -0.63
SS18-204ENST00000539244 CFL1P23528 166 aaKnown RBP11.11□□□□□ -0.63
SS18-204ENST00000539244 FMO3P31513 532 aa11.11□□□□□ -0.63
SS18-204ENST00000539244 SAA4P35542 130 aa11.11□□□□□ -0.63
SS18-204ENST00000539244 SLC15A1P46059 708 aa11.11□□□□□ -0.63
SS18-204ENST00000539244 UBE2E1P51965 193 aa11.11□□□□□ -0.63
SS18-204ENST00000539244 HMGA2P52926 109 aa11.11□□□□□ -0.63
SS18-204ENST00000539244 ACSM1Q08AH1 577 aa11.11□□□□□ -0.63
SS18-204ENST00000539244 TAF13Q15543 124 aa11.11□□□□□ -0.63
SS18-204ENST00000539244 KLHL12Q53G59 568 aa11.11□□□□□ -0.63
SS18-204ENST00000539244 LRRC10Q5BKY1 277 aa11.11□□□□□ -0.63
SS18-204ENST00000539244 SLC35E4Q6ICL7 350 aa11.11□□□□□ -0.63
SS18-204ENST00000539244 PRSS45Q7RTY3 260 aa11.11□□□□□ -0.63
SS18-204ENST00000539244 OR51L1Q8NGJ5 315 aa11.11□□□□□ -0.63
SS18-204ENST00000539244 OR10Z1Q8NGY1 313 aa11.11□□□□□ -0.63
SS18-204ENST00000539244 MCUR1Q96AQ8 359 aa11.11□□□□□ -0.63
SS18-204ENST00000539244 SGK3Q96BR1 496 aa11.11□□□□□ -0.63
SS18-204ENST00000539244 CMTM5Q96DZ9 223 aa11.11□□□□□ -0.63
SS18-204ENST00000539244 SEH1LQ96EE3 360 aa11.11□□□□□ -0.63
SS18-204ENST00000539244 REEP6Q96HR9 211 aa11.11□□□□□ -0.63
SS18-204ENST00000539244 TOR3AQ9H497 397 aa11.11□□□□□ -0.63
SS18-204ENST00000539244 IL1RAPQ9NPH3 570 aa11.11□□□□□ -0.63
SS18-204ENST00000539244 CENPMQ9NSP4 180 aa11.11□□□□□ -0.63
SS18-204ENST00000539244 MAGEL2Q9UJ55 1249 aa11.11□□□□□ -0.63
SS18-204ENST00000539244 V9GYQ6 96 aa11.11□□□□□ -0.63
SS18-204ENST00000539244 DHRS12A0PJE2 317 aa11.1□□□□□ -0.63
SS18-204ENST00000539244 M0R1W7 72 aa11.1□□□□□ -0.63
SS18-204ENST00000539244 CDIPTO14735 213 aa11.1□□□□□ -0.63
SS18-204ENST00000539244 KRT36O76013 467 aa11.1□□□□□ -0.63
SS18-204ENST00000539244 PAHP00439 452 aa11.1□□□□□ -0.63
SS18-204ENST00000539244 OPN1MWP04001 364 aa11.1□□□□□ -0.63
SS18-204ENST00000539244 OPN1MW2P0DN77 364 aa11.1□□□□□ -0.63
SS18-204ENST00000539244 OPN1MW3P0DN78 364 aa11.1□□□□□ -0.63
SS18-204ENST00000539244 HSD17B1P14061 328 aa11.1□□□□□ -0.63
SS18-204ENST00000539244 PRDX6P30041 224 aa11.1□□□□□ -0.63
SS18-204ENST00000539244 CX3CR1P49238 355 aa11.1□□□□□ -0.63
SS18-204ENST00000539244 SLC25A1P53007 311 aa11.1□□□□□ -0.63
SS18-204ENST00000539244 KLRD1Q13241 179 aa11.1□□□□□ -0.63
SS18-204ENST00000539244 IKZF1Q13422 519 aa11.1□□□□□ -0.63
SS18-204ENST00000539244 HERPUD1Q15011 391 aa11.1□□□□□ -0.63
SS18-204ENST00000539244 TIGD6Q17RP2 521 aa11.1□□□□□ -0.63
SS18-204ENST00000539244 SAMD5Q5TGI4 173 aa11.1□□□□□ -0.63
SS18-204ENST00000539244 NCR3LG1Q68D85 454 aa11.1□□□□□ -0.63
SS18-204ENST00000539244 C11orf88Q6PI97 169 aa11.1□□□□□ -0.63
SS18-204ENST00000539244 ZNF788Q6ZQV5 615 aa11.1□□□□□ -0.63
SS18-204ENST00000539244 LINC00471Q8N535 108 aa11.1□□□□□ -0.63
SS18-204ENST00000539244 RNF148Q8N7C7 305 aa11.1□□□□□ -0.63
SS18-204ENST00000539244 ZNF511Q8NB15 262 aa11.1□□□□□ -0.63
SS18-204ENST00000539244 BEND2Q8NDZ0 799 aa11.1□□□□□ -0.63
SS18-204ENST00000539244 CSNK2A3Q8NEV1 391 aa11.1□□□□□ -0.63
SS18-204ENST00000539244 OR52H1Q8NGJ2 320 aa11.1□□□□□ -0.63
SS18-204ENST00000539244 OR8D4Q8NGM9 314 aa11.1□□□□□ -0.63
SS18-204ENST00000539244 OR9Q1Q8NGQ5 310 aa11.1□□□□□ -0.63
SS18-204ENST00000539244 ITPKCQ96DU7 683 aa11.1□□□□□ -0.63
SS18-204ENST00000539244 RAB3IPQ96QF0 476 aaPredicted RBP11.1□□□□□ -0.63
SS18-204ENST00000539244 BTBD10Q9BSF8 475 aa11.1□□□□□ -0.63
SS18-204ENST00000539244 MYLK2Q9H1R3 596 aa11.1□□□□□ -0.63
SS18-204ENST00000539244 METTL8Q9H825 291 aaKnown RBP11.1□□□□□ -0.63
SS18-204ENST00000539244 SP140LQ9H930 580 aa11.1□□□□□ -0.63
SS18-204ENST00000539244 HAO2Q9NYQ3 351 aa11.1□□□□□ -0.63
SS18-204ENST00000539244 N6AMT1Q9Y5N5 214 aa11.1□□□□□ -0.63
SS18-204ENST00000539244 MEIOCA2RUB1 952 aa11.09□□□□□ -0.63
SS18-204ENST00000539244 ANKRD61A6NGH8 418 aa11.09□□□□□ -0.63
SS18-204ENST00000539244 TBX1O43435 398 aa11.09□□□□□ -0.63
SS18-204ENST00000539244 APOC1P02654 83 aa11.09□□□□□ -0.63
SS18-204ENST00000539244 SELLP14151 372 aa11.09□□□□□ -0.63
SS18-204ENST00000539244 SPI1P17947 270 aa11.09□□□□□ -0.63
SS18-204ENST00000539244 GABRA5P31644 462 aa11.09□□□□□ -0.63
SS18-204ENST00000539244 KIR2DS4P43632 304 aa11.09□□□□□ -0.63
SS18-204ENST00000539244 GSK3AP49840 483 aa11.09□□□□□ -0.63
SS18-204ENST00000539244 EFNB2P52799 333 aa11.09□□□□□ -0.63
SS18-204ENST00000539244 BLVRAP53004 296 aa11.09□□□□□ -0.63
SS18-204ENST00000539244 DLX1P56177 255 aa11.09□□□□□ -0.63
SS18-204ENST00000539244 CAV3P56539 151 aa11.09□□□□□ -0.63
SS18-204ENST00000539244 MXRA7P84157 204 aa11.09□□□□□ -0.63
SS18-204ENST00000539244 IL5RAQ01344 420 aa11.09□□□□□ -0.63
SS18-204ENST00000539244 PRB3Q04118 309 aaPredicted RBP11.09□□□□□ -0.63
SS18-204ENST00000539244 CRMP1Q14194 572 aa11.09□□□□□ -0.63
SS18-204ENST00000539244 SNCBQ16143 134 aa11.09□□□□□ -0.63
SS18-204ENST00000539244 FAM76BQ5HYJ3 339 aa11.09□□□□□ -0.63
SS18-204ENST00000539244 LINC01590Q5TEZ4 76 aa11.09□□□□□ -0.63
SS18-204ENST00000539244 ZNF770Q6IQ21 691 aaPredicted RBP11.09□□□□□ -0.63
SS18-204ENST00000539244 Q6ZTK2 550 aa11.09□□□□□ -0.63
SS18-204ENST00000539244 RASSF6Q6ZTQ3 369 aa11.09□□□□□ -0.63
SS18-204ENST00000539244 ANGPTL6Q8NI99 470 aa11.09□□□□□ -0.63
SS18-204ENST00000539244 RNF133Q8WVZ7 376 aa11.09□□□□□ -0.63
SS18-204ENST00000539244 CFHR4Q92496 578 aa11.09□□□□□ -0.63
SS18-204ENST00000539244 GAFA1Q96PS6 74 aa11.09□□□□□ -0.63
SS18-204ENST00000539244 PPA2Q9H2U2 334 aa11.09□□□□□ -0.63
SS18-204ENST00000539244 RGCCQ9H4X1 137 aa11.09□□□□□ -0.63
SS18-204ENST00000539244 PPP1R3EQ9H7J1 279 aa11.09□□□□□ -0.63
SS18-204ENST00000539244 BAIAP2Q9UQB8 552 aa11.09□□□□□ -0.63
SS18-204ENST00000539244 MAB21L2Q9Y586 359 aa11.09□□□□□ -0.63
SS18-204ENST00000539244 LYVE1Q9Y5Y7 322 aa11.09□□□□□ -0.63
SS18-204ENST00000539244 NKX6-3A6NJ46 265 aa11.08□□□□□ -0.64
SS18-204ENST00000539244 TMEM210A6NLX4 147 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms