RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 KLHL36Q8N4N3 616 aa8.86□□□□□ -0.99
CD44-227ENST00000528086 ZDHHC22Q8N966 263 aa8.86□□□□□ -0.99
CD44-227ENST00000528086 PLPP7Q8NBV4 271 aa8.86□□□□□ -0.99
CD44-227ENST00000528086 OR1M1Q8NGA1 313 aa8.86□□□□□ -0.99
CD44-227ENST00000528086 OR52H1Q8NGJ2 320 aa8.86□□□□□ -0.99
CD44-227ENST00000528086 C22orf15Q8WYQ4 148 aa8.86□□□□□ -0.99
CD44-227ENST00000528086 ERGIC1Q969X5 290 aa8.86□□□□□ -0.99
CD44-227ENST00000528086 NEIL1Q96FI4 390 aaPredicted RBP8.86□□□□□ -0.99
CD44-227ENST00000528086 PGAM5Q96HS1 289 aa8.86□□□□□ -0.99
CD44-227ENST00000528086 SLC6A7Q99884 636 aa8.86□□□□□ -0.99
CD44-227ENST00000528086 APOL4Q9BPW4 351 aa8.86□□□□□ -0.99
CD44-227ENST00000528086 SLC22A4Q9H015 551 aa8.86□□□□□ -0.99
CD44-227ENST00000528086 RASSF4Q9H2L5 321 aa8.86□□□□□ -0.99
CD44-227ENST00000528086 C1orf123Q9NWV4 160 aa8.86□□□□□ -0.99
CD44-227ENST00000528086 ZNF69Q9UC07 566 aa8.86□□□□□ -0.99
CD44-227ENST00000528086 AASSQ9UDR5 926 aa8.86□□□□□ -0.99
CD44-227ENST00000528086 MRM2Q9UI43 246 aaKnown RBP8.86□□□□□ -0.99
CD44-227ENST00000528086 PCDHB10Q9UN67 800 aa8.86□□□□□ -0.99
CD44-227ENST00000528086 IGHV2-70DA0A0C4DH43 119 aa8.85□□□□□ -0.99
CD44-227ENST00000528086 KIR2DS1A0A191URI9 304 aa8.85□□□□□ -0.99
CD44-227ENST00000528086 TCF21O43680 179 aa8.85□□□□□ -0.99
CD44-227ENST00000528086 APOL3O95236 402 aa8.85□□□□□ -0.99
CD44-227ENST00000528086 CST4P01036 141 aa8.85□□□□□ -0.99
CD44-227ENST00000528086 TTRP02766 147 aa8.85□□□□□ -0.99
CD44-227ENST00000528086 ALPLP05186 524 aa8.85□□□□□ -0.99
CD44-227ENST00000528086 RPS2P15880 293 aaKnown RBP8.85□□□□□ -0.99
CD44-227ENST00000528086 PCMT1P22061 227 aa8.85□□□□□ -0.99
CD44-227ENST00000528086 GFOD2Q3B7J2 385 aa8.85□□□□□ -0.99
CD44-227ENST00000528086 NXNL2Q5VZ03 156 aa8.85□□□□□ -0.99
CD44-227ENST00000528086 TEX36Q5VZQ5 186 aa8.85□□□□□ -0.99
CD44-227ENST00000528086 DCDC5Q6ZRR9 648 aa8.85□□□□□ -0.99
CD44-227ENST00000528086 Q6ZSR3 168 aa8.85□□□□□ -0.99
CD44-227ENST00000528086 BOLLQ8N9W6 283 aaKnown RBP8.85□□□□□ -0.99
CD44-227ENST00000528086 OR5P3Q8WZ94 311 aa8.85□□□□□ -0.99
CD44-227ENST00000528086 EME1Q96AY2 570 aa8.85□□□□□ -0.99
CD44-227ENST00000528086 PLEKHA8Q96JA3 519 aa8.85□□□□□ -0.99
CD44-227ENST00000528086 MBOAT4Q96T53 435 aa8.85□□□□□ -0.99
CD44-227ENST00000528086 SSBP3Q9BWW4 388 aaPredicted RBP8.85□□□□□ -0.99
CD44-227ENST00000528086 WDR13Q9H1Z4 485 aa8.85□□□□□ -0.99
CD44-227ENST00000528086 OR10A2Q9H208 303 aa8.85□□□□□ -0.99
CD44-227ENST00000528086 OPA3Q9H6K4 179 aa8.85□□□□□ -0.99
CD44-227ENST00000528086 FN3KRPQ9HA64 309 aa8.85□□□□□ -0.99
CD44-227ENST00000528086 HAO2Q9NYQ3 351 aa8.85□□□□□ -0.99
CD44-227ENST00000528086 KIF17Q9P2E2 1029 aa8.85□□□□□ -0.99
CD44-227ENST00000528086 MIOXQ9UGB7 285 aa8.85□□□□□ -0.99
CD44-227ENST00000528086 LAMP5Q9UJQ1 280 aa8.85□□□□□ -0.99
CD44-227ENST00000528086 LRCH1Q9Y2L9 728 aa8.85□□□□□ -0.99
CD44-227ENST00000528086 A0A0U1RQV5 110 aa8.84□□□□□ -0.99
CD44-227ENST00000528086 ZNF850A8MQ14 1090 aa8.84□□□□□ -0.99
CD44-227ENST00000528086 J3QRE1 110 aa8.84□□□□□ -0.99
CD44-227ENST00000528086 GYPAP02724 150 aa8.84□□□□□ -0.99
CD44-227ENST00000528086 SELLP14151 372 aa8.84□□□□□ -0.99
CD44-227ENST00000528086 MMP9P14780 707 aa8.84□□□□□ -0.99
CD44-227ENST00000528086 GATA3P23771 443 aa8.84□□□□□ -0.99
CD44-227ENST00000528086 CFHR2P36980 270 aa8.84□□□□□ -0.99
CD44-227ENST00000528086 PITPNBP48739 271 aa8.84□□□□□ -0.99
CD44-227ENST00000528086 HILS1P60008 231 aa8.84□□□□□ -0.99
CD44-227ENST00000528086 CXCR4P61073 352 aa8.84□□□□□ -0.99
CD44-227ENST00000528086 PRDX4Q13162 271 aa8.84□□□□□ -0.99
CD44-227ENST00000528086 ESCO2Q56NI9 601 aa8.84□□□□□ -0.99
CD44-227ENST00000528086 DEGS2Q6QHC5 323 aa8.84□□□□□ -0.99
CD44-227ENST00000528086 KRT77Q7Z794 578 aa8.84□□□□□ -0.99
CD44-227ENST00000528086 SLC35F2Q8IXU6 374 aa8.84□□□□□ -0.99
CD44-227ENST00000528086 ZNF679Q8IYX0 411 aa8.84□□□□□ -0.99
CD44-227ENST00000528086 GALNT4Q8N4A0 578 aa8.84□□□□□ -0.99
CD44-227ENST00000528086 SPERTQ8NA61 448 aa8.84□□□□□ -0.99
CD44-227ENST00000528086 NANPQ8TBE9 248 aa8.84□□□□□ -0.99
CD44-227ENST00000528086 RAB40AQ8WXH6 277 aa8.84□□□□□ -0.99
CD44-227ENST00000528086 RPL3LQ92901 407 aaKnown RBP8.84□□□□□ -0.99
CD44-227ENST00000528086 CNN2Q99439 309 aaKnown RBP8.84□□□□□ -0.99
CD44-227ENST00000528086 SLC29A1Q99808 456 aa8.84□□□□□ -0.99
CD44-227ENST00000528086 PAPOLGQ9BWT3 736 aaKnown RBP8.84□□□□□ -0.99
CD44-227ENST00000528086 PBOV1Q9GZY1 135 aa8.84□□□□□ -0.99
CD44-227ENST00000528086 RGCCQ9H4X1 137 aa8.84□□□□□ -0.99
CD44-227ENST00000528086 OCEL1Q9H607 264 aa8.84□□□□□ -0.99
CD44-227ENST00000528086 USE1Q9NZ43 259 aa8.84□□□□□ -0.99
CD44-227ENST00000528086 NUFIP1Q9UHK0 495 aaKnown RBP8.84□□□□□ -0.99
CD44-227ENST00000528086 IGHV3OR16-10A0A075B7F0 116 aa8.83□□□□□ -1
CD44-227ENST00000528086 TMEM269A0A1B0GVZ9 245 aa8.83□□□□□ -1
CD44-227ENST00000528086 OOEPA6NGQ2 149 aa8.83□□□□□ -1
CD44-227ENST00000528086 A6NLC8 198 aa8.83□□□□□ -1
CD44-227ENST00000528086 LRRC30A6NM36 301 aa8.83□□□□□ -1
CD44-227ENST00000528086 ANKRD30BLA7E2S9 258 aa8.83□□□□□ -1
CD44-227ENST00000528086 SRRM5B3KS81 715 aa8.83□□□□□ -1
CD44-227ENST00000528086 DLGAP1O14490 977 aa8.83□□□□□ -1
CD44-227ENST00000528086 EI24O14681 340 aa8.83□□□□□ -1
CD44-227ENST00000528086 CDIPTO14735 213 aa8.83□□□□□ -1
CD44-227ENST00000528086 RHBDL1O75783 438 aa8.83□□□□□ -1
CD44-227ENST00000528086 PLATP00750 562 aa8.83□□□□□ -1
CD44-227ENST00000528086 FCGR1AP12314 374 aa8.83□□□□□ -1
CD44-227ENST00000528086 GABRB1P18505 474 aa8.83□□□□□ -1
CD44-227ENST00000528086 ISL1P61371 349 aa8.83□□□□□ -1
CD44-227ENST00000528086 ZNF85Q03923 595 aa8.83□□□□□ -1
CD44-227ENST00000528086 TMEM42Q69YG0 159 aa8.83□□□□□ -1
CD44-227ENST00000528086 ZNF322Q6U7Q0 402 aaPredicted RBP8.83□□□□□ -1
CD44-227ENST00000528086 USP43Q70EL4 1123 aa8.83□□□□□ -1
CD44-227ENST00000528086 C1orf87Q8N0U7 546 aa8.83□□□□□ -1
CD44-227ENST00000528086 SCCPDHQ8NBX0 429 aa8.83□□□□□ -1
CD44-227ENST00000528086 CSNK2A3Q8NEV1 391 aa8.83□□□□□ -1
CD44-227ENST00000528086 OR11L1Q8NGX0 322 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms