RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 UBE2NLQ5JXB2 153 aa18.12■□□□□ 0.49
VPS28-208ENST00000527797 TMEM42Q69YG0 159 aa18.12■□□□□ 0.49
VPS28-208ENST00000527797 ALKBH2Q6NS38 261 aa18.12■□□□□ 0.49
VPS28-208ENST00000527797 FJX1Q86VR8 437 aa18.12■□□□□ 0.49
VPS28-208ENST00000527797 OR51D1Q8NGF3 324 aa18.12■□□□□ 0.49
VPS28-208ENST00000527797 OR56B2PQ8NGI1 322 aa18.12■□□□□ 0.49
VPS28-208ENST00000527797 SLC25A28Q96A46 364 aa18.12■□□□□ 0.49
VPS28-208ENST00000527797 FAM3DQ96BQ1 224 aa18.12■□□□□ 0.49
VPS28-208ENST00000527797 NKX3-1Q99801 234 aaPredicted RBP18.12■□□□□ 0.49
VPS28-208ENST00000527797 CNTD2Q9H8S5 307 aa18.12■□□□□ 0.49
VPS28-208ENST00000527797 CYSLTR2Q9NS75 346 aa18.12■□□□□ 0.49
VPS28-208ENST00000527797 COQ3Q9NZJ6 369 aa18.12■□□□□ 0.49
VPS28-208ENST00000527797 KCNN3Q9UGI6 736 aa18.12■□□□□ 0.49
VPS28-208ENST00000527797 V9GYH0 126 aa18.12■□□□□ 0.49
VPS28-208ENST00000527797 SPENQ96T58 3664 aaKnown RBP18.12■□□□□ 0.49
VPS28-208ENST00000527797 M0R1B8 84 aa18.12■□□□□ 0.49
VPS28-208ENST00000527797 ATXN7O15265 892 aaPredicted RBP18.12■□□□□ 0.49
VPS28-208ENST00000527797 NRASP01111 189 aa18.12■□□□□ 0.49
VPS28-208ENST00000527797 AZGP1P25311 298 aaKnown RBP18.12■□□□□ 0.49
VPS28-208ENST00000527797 CHRNB4P30926 498 aa18.12■□□□□ 0.49
VPS28-208ENST00000527797 CCKARP32238 428 aa18.12■□□□□ 0.49
VPS28-208ENST00000527797 RAD52P43351 418 aa18.12■□□□□ 0.49
VPS28-208ENST00000527797 RANBP1P43487 201 aa18.12■□□□□ 0.49
VPS28-208ENST00000527797 CNN3Q15417 329 aaKnown RBP18.12■□□□□ 0.49
VPS28-208ENST00000527797 C16orf87Q6PH81 154 aa18.12■□□□□ 0.49
VPS28-208ENST00000527797 METAP1DQ6UB28 335 aaPredicted RBP18.12■□□□□ 0.49
VPS28-208ENST00000527797 CSNK2A3Q8NEV1 391 aa18.12■□□□□ 0.49
VPS28-208ENST00000527797 PIGCQ92535 297 aa18.12■□□□□ 0.49
VPS28-208ENST00000527797 EXTL2Q9UBQ6 330 aa18.12■□□□□ 0.49
VPS28-208ENST00000527797 PKD1L2Q7Z442 2459 aa18.12■□□□□ 0.49
VPS28-208ENST00000527797 SHANK1Q9Y566 2161 aa18.11■□□□□ 0.49
VPS28-208ENST00000527797 LOC100289279A0A1B0GTE1 492 aa18.11■□□□□ 0.49
VPS28-208ENST00000527797 PRKACBP22694 351 aa18.11■□□□□ 0.49
VPS28-208ENST00000527797 ASCL1P50553 236 aa18.11■□□□□ 0.49
VPS28-208ENST00000527797 CAPZA1P52907 286 aa18.11■□□□□ 0.49
VPS28-208ENST00000527797 C2orf76Q3KRA6 126 aa18.11■□□□□ 0.49
VPS28-208ENST00000527797 FBXW12Q6X9E4 464 aa18.11■□□□□ 0.49
VPS28-208ENST00000527797 SSX8Q7RTT4 187 aa18.11■□□□□ 0.49
VPS28-208ENST00000527797 OR1J1Q8NGS3 322 aa18.11■□□□□ 0.49
VPS28-208ENST00000527797 NPRL2Q8WTW4 380 aa18.11■□□□□ 0.49
VPS28-208ENST00000527797 SPSB1Q96BD6 273 aa18.11■□□□□ 0.49
VPS28-208ENST00000527797 CCDC120Q96HB5 630 aa18.11■□□□□ 0.49
VPS28-208ENST00000527797 TECTBQ96PL2 329 aa18.11■□□□□ 0.49
VPS28-208ENST00000527797 RHBDD3Q9Y3P4 386 aa18.11■□□□□ 0.49
VPS28-208ENST00000527797 SPTA1P02549 2419 aa18.11■□□□□ 0.49
VPS28-208ENST00000527797 BSNQ9UPA5 3926 aa18.1■□□□□ 0.49
VPS28-208ENST00000527797 RTTNQ86VV8 2226 aa18.1■□□□□ 0.49
VPS28-208ENST00000527797 IGHV2OR16-5A0A0B4J2B6 119 aa18.1■□□□□ 0.49
VPS28-208ENST00000527797 CD300LBA8K4G0 201 aa18.1■□□□□ 0.49
VPS28-208ENST00000527797 ARSBP15848 533 aa18.1■□□□□ 0.49
VPS28-208ENST00000527797 TUBG1P23258 451 aa18.1■□□□□ 0.49
VPS28-208ENST00000527797 POU3F4P49335 361 aa18.1■□□□□ 0.49
VPS28-208ENST00000527797 ART1P52961 327 aa18.1■□□□□ 0.49
VPS28-208ENST00000527797 RIN1Q13671 783 aa18.1■□□□□ 0.49
VPS28-208ENST00000527797 SPATA46Q5T0L3 261 aa18.1■□□□□ 0.49
VPS28-208ENST00000527797 MOB3CQ70IA8 216 aa18.1■□□□□ 0.49
VPS28-208ENST00000527797 FTMTQ8N4E7 242 aa18.1■□□□□ 0.49
VPS28-208ENST00000527797 OR4D6Q8NGJ1 314 aa18.1■□□□□ 0.49
VPS28-208ENST00000527797 SSC4DQ8WTU2 575 aa18.1■□□□□ 0.49
VPS28-208ENST00000527797 PIGTQ969N2 578 aa18.1■□□□□ 0.49
VPS28-208ENST00000527797 SPACA5Q96QH8 159 aa18.1■□□□□ 0.49
VPS28-208ENST00000527797 GPER1Q99527 375 aa18.1■□□□□ 0.49
VPS28-208ENST00000527797 PALMDQ9NP74 551 aa18.1■□□□□ 0.49
VPS28-208ENST00000527797 TUBG2Q9NRH3 451 aa18.1■□□□□ 0.49
VPS28-208ENST00000527797 A0A1B0GUH1 482 aa18.09■□□□□ 0.49
VPS28-208ENST00000527797 PTBP1P26599 531 aaKnown RBP eCLIP18.09■□□□□ 0.49
VPS28-208ENST00000527797 NAAAQ02083 359 aa18.09■□□□□ 0.49
VPS28-208ENST00000527797 KISS1Q15726 138 aa18.09■□□□□ 0.49
VPS28-208ENST00000527797 DMRTC1Q5HYR2 192 aa18.09■□□□□ 0.49
VPS28-208ENST00000527797 XKRXQ6PP77 449 aa18.09■□□□□ 0.49
VPS28-208ENST00000527797 C1orf174Q8IYL3 243 aa18.09■□□□□ 0.49
VPS28-208ENST00000527797 OR4M1Q8NGD0 313 aa18.09■□□□□ 0.49
VPS28-208ENST00000527797 SLC25A40Q8TBP6 338 aa18.09■□□□□ 0.49
VPS28-208ENST00000527797 UBASH3BQ8TF42 649 aa18.09■□□□□ 0.49
VPS28-208ENST00000527797 CMBLQ96DG6 245 aa18.09■□□□□ 0.49
VPS28-208ENST00000527797 SOSTQ9BQB4 213 aa18.09■□□□□ 0.49
VPS28-208ENST00000527797 BCL2L14Q9BZR8 327 aa18.09■□□□□ 0.49
VPS28-208ENST00000527797 OR2J1Q9GZK6 312 aa18.09■□□□□ 0.49
VPS28-208ENST00000527797 SLC7A11Q9UPY5 501 aa18.09■□□□□ 0.49
VPS28-208ENST00000527797 CST4P01036 141 aa18.09■□□□□ 0.49
VPS28-208ENST00000527797 CALCRP30988 508 aa18.09■□□□□ 0.49
VPS28-208ENST00000527797 ADORA2A-AS1P86434 159 aa18.09■□□□□ 0.49
VPS28-208ENST00000527797 IL18Q14116 193 aa18.09■□□□□ 0.49
VPS28-208ENST00000527797 KRT74Q7RTS7 529 aa18.09■□□□□ 0.49
VPS28-208ENST00000527797 ANGPTL5Q86XS5 388 aa18.09■□□□□ 0.49
VPS28-208ENST00000527797 CMTM4Q8IZR5 234 aa18.09■□□□□ 0.49
VPS28-208ENST00000527797 PNLDC1Q8NA58 520 aaKnown RBP18.09■□□□□ 0.49
VPS28-208ENST00000527797 SYNPRQ8TBG9 265 aa18.09■□□□□ 0.49
VPS28-208ENST00000527797 RAB40AQ8WXH6 277 aa18.09■□□□□ 0.49
VPS28-208ENST00000527797 SLC25A38Q96DW6 304 aa18.09■□□□□ 0.49
VPS28-208ENST00000527797 CPNE2Q96FN4 548 aaPredicted RBP18.09■□□□□ 0.49
VPS28-208ENST00000527797 PAPOLGQ9BWT3 736 aaKnown RBP18.09■□□□□ 0.49
VPS28-208ENST00000527797 ABCG5Q9H222 651 aa18.09■□□□□ 0.49
VPS28-208ENST00000527797 NPAP1Q9NZP6 1156 aa18.09■□□□□ 0.49
VPS28-208ENST00000527797 ACACBO00763 2458 aa18.08■□□□□ 0.49
VPS28-208ENST00000527797 ATRXP46100 2492 aa18.08■□□□□ 0.48
VPS28-208ENST00000527797 ZNF850A8MQ14 1090 aa18.08■□□□□ 0.48
VPS28-208ENST00000527797 CRYAAP02489 173 aa18.08■□□□□ 0.48
VPS28-208ENST00000527797 RAC2P15153 192 aa18.08■□□□□ 0.48
VPS28-208ENST00000527797 PPP3CBP16298 524 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms