RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 NPEPL1Q8NDH3 523 aa10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 NUP43Q8NFH3 380 aa10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 PPP1R14AQ96A00 147 aa10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 MS4A10Q96PG2 267 aa10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 PRRX2Q99811 253 aa10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 CKLFQ9UBR5 152 aa10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 MRM2Q9UI43 246 aaKnown RBP10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 ICAM5Q9UMF0 924 aa10.74□□□□□ -0.69
LIMCH1-213ENST00000511496 C4orf47A7E2U8 309 aa10.73□□□□□ -0.69
LIMCH1-213ENST00000511496 C17orf105B2RV13 164 aa10.73□□□□□ -0.69
LIMCH1-213ENST00000511496 J3QW42 95 aa10.73□□□□□ -0.69
LIMCH1-213ENST00000511496 SOX1O00570 391 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-213ENST00000511496 SFT2D2O95562 160 aa10.73□□□□□ -0.69
LIMCH1-213ENST00000511496 TAS2R31P59538 309 aa10.73□□□□□ -0.69
LIMCH1-213ENST00000511496 GNB2P62879 340 aa10.73□□□□□ -0.69
LIMCH1-213ENST00000511496 DUSP2Q05923 314 aa10.73□□□□□ -0.69
LIMCH1-213ENST00000511496 PRSS8Q16651 343 aa10.73□□□□□ -0.69
LIMCH1-213ENST00000511496 NUP54Q7Z3B4 507 aa10.73□□□□□ -0.69
LIMCH1-213ENST00000511496 LINC01555Q8NAE3 123 aa10.73□□□□□ -0.69
LIMCH1-213ENST00000511496 LFNGQ8NES3 379 aa10.73□□□□□ -0.69
LIMCH1-213ENST00000511496 TECTBQ96PL2 329 aa10.73□□□□□ -0.69
LIMCH1-213ENST00000511496 MACROD1Q9BQ69 325 aa10.73□□□□□ -0.69
LIMCH1-213ENST00000511496 PADI3Q9ULW8 664 aa10.73□□□□□ -0.69
LIMCH1-213ENST00000511496 PRRC2BQ5JSZ5 2229 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-213ENST00000511496 CD55P08174 381 aa10.73□□□□□ -0.69
LIMCH1-213ENST00000511496 OR5G3P0C626 314 aa10.73□□□□□ -0.69
LIMCH1-213ENST00000511496 HOXC8P31273 242 aa10.73□□□□□ -0.69
LIMCH1-213ENST00000511496 RAB11AP62491 216 aa10.73□□□□□ -0.69
LIMCH1-213ENST00000511496 SLC25A26Q70HW3 274 aa10.73□□□□□ -0.69
LIMCH1-213ENST00000511496 SLC16A11Q8NCK7 471 aa10.73□□□□□ -0.69
LIMCH1-213ENST00000511496 OR4K15Q8NH41 348 aa10.73□□□□□ -0.69
LIMCH1-213ENST00000511496 RASD2Q96D21 266 aa10.73□□□□□ -0.69
LIMCH1-213ENST00000511496 PCED1AQ9H1Q7 454 aa10.73□□□□□ -0.69
LIMCH1-213ENST00000511496 C5orf66Q9H5L9 145 aa10.73□□□□□ -0.69
LIMCH1-213ENST00000511496 WFDC1Q9HC57 220 aa10.73□□□□□ -0.69
LIMCH1-213ENST00000511496 SRA1Q9HD15 236 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-213ENST00000511496 TRBV5-5A0A0J9YX44 114 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 A0A1W2PN81 502 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 XRCC2O43543 280 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 IGLV3-27P01718 113 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 SMIM10L2AP0DMW4 78 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 SMIM10L2BP0DMW5 78 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 SERPINA4P29622 427 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 CHRNA7P36544 502 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 SSR2P43308 183 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 ZNF136P52737 540 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 MPV17LQ2QL34 196 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 CHRFAM7AQ494W8 412 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 TMCO2Q7Z6W1 182 aaPredicted RBP10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 TMEM123Q8N131 208 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 STPG4Q8N801 248 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 OR14L1PQ8NHC6 308 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 RNF166Q96A37 237 aaPredicted RBP10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 TMEM230Q96A57 120 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 RNF2Q99496 336 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 CSTL1Q9H114 145 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 TCFL5Q9UL49 500 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 FUT9Q9Y231 359 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 MRPS18BQ9Y676 258 aaKnown RBP10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 SCDO00767 359 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 UPK3AO75631 287 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 GJB5O95377 273 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 KLKB1P03952 638 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 CCKARP32238 428 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 SCAND1P57086 179 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 SPOCK1Q08629 439 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 GLB1LQ6UWU2 654 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 SAMD7Q7Z3H4 446 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 CDH20Q9HBT6 801 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 STRAPQ9Y3F4 350 aaKnown RBP10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 LOC105371242A0A075B767 164 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 H7C4K7 107 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 K7EP13 123 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 GLRA1P23415 457 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 CDC42EP1Q00587 391 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 ENDOGQ14249 297 aaKnown RBP10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 TCEAL5Q5H9L2 206 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 TMEM108Q6UXF1 575 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 TMEM184AQ6ZMB5 413 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 TPRG1Q6ZUI0 275 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 OR2AJ1Q8NGZ0 328 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 TOMM40LQ969M1 308 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 UBE2E3Q969T4 207 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 SLC35A4Q96G79 324 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 LYSMD1Q96S90 227 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 LPAR4Q99677 370 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 LRFN1Q9P244 771 aa10.72□□□□□ -0.69
LIMCH1-213ENST00000511496 NDUFB8O95169 186 aa10.71□□□□□ -0.69
LIMCH1-213ENST00000511496 GNB3P16520 340 aa10.71□□□□□ -0.69
LIMCH1-213ENST00000511496 CORO1AP31146 461 aaKnown RBP10.71□□□□□ -0.69
LIMCH1-213ENST00000511496 OR3A2P47893 321 aa10.71□□□□□ -0.69
LIMCH1-213ENST00000511496 RPL23AP62750 156 aaKnown RBP10.71□□□□□ -0.69
LIMCH1-213ENST00000511496 UBE2V1Q13404 147 aa10.71□□□□□ -0.69
LIMCH1-213ENST00000511496 FZD2Q14332 565 aa10.71□□□□□ -0.69
LIMCH1-213ENST00000511496 RTN4RL2Q86UN3 420 aa10.71□□□□□ -0.69
LIMCH1-213ENST00000511496 IL22RA1Q8N6P7 574 aa10.71□□□□□ -0.69
LIMCH1-213ENST00000511496 NOXO1Q8NFA2 376 aa10.71□□□□□ -0.69
LIMCH1-213ENST00000511496 ALG12Q9BV10 488 aa10.71□□□□□ -0.69
LIMCH1-213ENST00000511496 A0A0U1RQV5 110 aa10.71□□□□□ -0.69
LIMCH1-213ENST00000511496 A0A1B0GUS0 222 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms