RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 DOK4Q8TEW6 326 aa3.33□□□□□ -1.88
VPS13A-212ENST00000493341 C20orf144Q9BQM9 153 aa3.33□□□□□ -1.88
VPS13A-212ENST00000493341 WDR55Q9H6Y2 383 aaPredicted RBP3.33□□□□□ -1.88
VPS13A-212ENST00000493341 ZDHHC4Q9NPG8 344 aa3.33□□□□□ -1.88
VPS13A-212ENST00000493341 PLSCR3Q9NRY6 295 aa3.33□□□□□ -1.88
VPS13A-212ENST00000493341 ZNF257Q9Y2Q1 563 aa3.33□□□□□ -1.88
VPS13A-212ENST00000493341 KDM5CP41229 1560 aa3.33□□□□□ -1.88
VPS13A-212ENST00000493341 ITSN2Q9NZM3 1697 aa3.33□□□□□ -1.88
VPS13A-212ENST00000493341 ADGRL1O94910 1474 aa3.33□□□□□ -1.88
VPS13A-212ENST00000493341 MAGI2Q86UL8 1455 aa3.33□□□□□ -1.88
VPS13A-212ENST00000493341 IGHV2OR16-5A0A0B4J2B6 119 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 ITGB1BP1O14713 200 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 BCL2L11O43521 198 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 TRAF3IP2O43734 574 aaPredicted RBP3.32□□□□□ -1.88
VPS13A-212ENST00000493341 INSP01308 110 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 OCMP0CE72 109 aaPredicted RBP3.32□□□□□ -1.88
VPS13A-212ENST00000493341 HLA-GP17693 338 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 NUP107P57740 925 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 HERVK_113P61574 105 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 OR1Q1Q15612 314 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 LPAL2Q16609 132 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 KRTAP27-1Q3LI81 207 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 COX15Q7KZN9 410 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 NKAIN4Q8IVV8 208 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 LRRC52Q8N7C0 313 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 COX18Q8N8Q8 333 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 SFXN5Q8TD22 340 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 SEH1LQ96EE3 360 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 VAT1Q99536 393 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 DRC3Q9H069 523 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 OR51B5Q9H339 312 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 TMEM27Q9HBJ8 222 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 NKIRAS1Q9NYS0 192 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 NUFIP1Q9UHK0 495 aaKnown RBP3.32□□□□□ -1.88
VPS13A-212ENST00000493341 PSMD13Q9UNM6 376 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 ACOT9Q9Y305 439 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 TROQ12816 1431 aaPredicted RBP3.32□□□□□ -1.88
VPS13A-212ENST00000493341 ISPDA4D126 451 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 EMC8O43402 210 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 PLCH2O75038 1416 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 ACTL6AO96019 429 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 CTRLP40313 264 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 NMUP48645 174 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 RGS19P49795 217 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 TMEM183BQ1AE95 376 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 BSXQ3C1V8 233 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 IL34Q6ZMJ4 242 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 FAM19A1Q7Z5A9 133 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 TMEM183AQ8IXX5 376 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 SLC34A3Q8N130 599 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 DCPSQ96C86 337 aaKnown RBP3.32□□□□□ -1.88
VPS13A-212ENST00000493341 Q96MT0 163 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 ZNF396Q96N95 335 aaPredicted RBP3.32□□□□□ -1.88
VPS13A-212ENST00000493341 OR2M2Q96R28 347 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 HDHD3Q9BSH5 251 aaPredicted RBP3.32□□□□□ -1.88
VPS13A-212ENST00000493341 SIGLEC1Q9BZZ2 1709 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 PORCNQ9H237 461 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 MMP26Q9NRE1 261 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 AP3M1Q9Y2T2 418 aa3.32□□□□□ -1.88
VPS13A-212ENST00000493341 FANCAO15360 1455 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 TRAV8-4A0A0B4J246 113 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 SLC5A10A0PJK1 596 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 PLAC8L1A1L4L8 177 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 FABP12A6NFH5 140 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 PRAMEF26H0Y7S4 382 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 ZNF593O00488 134 aaPredicted RBP3.31□□□□□ -1.88
VPS13A-212ENST00000493341 PHOX2AO14813 284 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 AQP9O43315 295 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 P01737 135 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 SLC35G6P0C7Q6 338 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 PET100P0DJ07 73 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 CRISP2P16562 243 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 PLTPP55058 493 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 LYZP61626 148 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 IL5RAQ01344 420 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 KIR2DS1Q14954 304 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 PON2Q15165 354 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 RBMY1FQ15415 496 aaKnown RBP3.31□□□□□ -1.88
VPS13A-212ENST00000493341 ZBTB6Q15916 424 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 CAMK2N1Q7Z7J9 78 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 PRSS58Q8IYP2 241 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 UBAC2Q8NBM4 344 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 ZNF485Q8NCK3 441 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 ZNF738Q8NE65 137 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 OR8G5Q8NG78 346 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 RERGQ96A58 199 aaPredicted RBP3.31□□□□□ -1.88
VPS13A-212ENST00000493341 ZNF488Q96MN9 340 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 RDH12Q96NR8 316 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 WFIKKN1Q96NZ8 548 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 PDCD1LG2Q9BQ51 273 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 COA1Q9GZY4 146 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 SLC38A10Q9HBR0 1119 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 NDRG2Q9UN36 371 aaKnown RBP3.31□□□□□ -1.88
VPS13A-212ENST00000493341 DENND4BO75064 1496 aaPredicted RBP3.31□□□□□ -1.88
VPS13A-212ENST00000493341 ABCC1P33527 1531 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 ZFYVE16Q7Z3T8 1539 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 IGHV3OR16-9A0A0B4J2B5 98 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 IGHV1-69DA0A0B4J2H0 117 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 LINC01619G3V211 115 aa3.31□□□□□ -1.88
VPS13A-212ENST00000493341 M0R1B8 84 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 173.9 ms