RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 LHFPL3Q86UP9 236 aa15.71■□□□□ 0.11
SHH-203ENST00000435425 KLBQ86Z14 1044 aa15.71■□□□□ 0.11
SHH-203ENST00000435425 ELMOD2Q8IZ81 293 aa15.71■□□□□ 0.11
SHH-203ENST00000435425 FTMTQ8N4E7 242 aa15.71■□□□□ 0.11
SHH-203ENST00000435425 ACBD7Q8N6N7 88 aa15.71■□□□□ 0.11
SHH-203ENST00000435425 BOLLQ8N9W6 283 aaKnown RBP15.71■□□□□ 0.11
SHH-203ENST00000435425 LINC01356Q8N9X3 169 aa15.71■□□□□ 0.11
SHH-203ENST00000435425 ADI1Q9BV57 179 aa15.71■□□□□ 0.11
SHH-203ENST00000435425 VCXQ9H320 206 aa15.71■□□□□ 0.11
SHH-203ENST00000435425 MOB1AQ9H8S9 216 aa15.71■□□□□ 0.11
SHH-203ENST00000435425 FN3KRPQ9HA64 309 aa15.71■□□□□ 0.11
SHH-203ENST00000435425 PCDHB10Q9UN67 800 aa15.71■□□□□ 0.11
SHH-203ENST00000435425 MYRFQ9Y2G1 1151 aa15.71■□□□□ 0.11
SHH-203ENST00000435425 RPL36Q9Y3U8 105 aaKnown RBP15.71■□□□□ 0.11
SHH-203ENST00000435425 MALRD1Q5VYJ5 2156 aa15.7■□□□□ 0.1
SHH-203ENST00000435425 LRRC30A6NM36 301 aa15.7■□□□□ 0.1
SHH-203ENST00000435425 J3QLW9 94 aa15.7■□□□□ 0.1
SHH-203ENST00000435425 IFNL4K9M1U5 179 aa15.7■□□□□ 0.1
SHH-203ENST00000435425 WBP4O75554 376 aaKnown RBP15.7■□□□□ 0.1
SHH-203ENST00000435425 ZNF19P17023 458 aa15.7■□□□□ 0.1
SHH-203ENST00000435425 CAPGP40121 348 aa15.7■□□□□ 0.1
SHH-203ENST00000435425 GATA4P43694 442 aa15.7■□□□□ 0.1
SHH-203ENST00000435425 CDH15P55291 814 aa15.7■□□□□ 0.1
SHH-203ENST00000435425 OR12D2P58182 307 aa15.7■□□□□ 0.1
SHH-203ENST00000435425 ZMYND11Q15326 602 aa15.7■□□□□ 0.1
SHH-203ENST00000435425 ZNF826PQ6ZT77 177 aa15.7■□□□□ 0.1
SHH-203ENST00000435425 CATSPERDQ86XM0 798 aa15.7■□□□□ 0.1
SHH-203ENST00000435425 SETD9Q8NE22 299 aa15.7■□□□□ 0.1
SHH-203ENST00000435425 C19orf18Q8NEA5 215 aa15.7■□□□□ 0.1
SHH-203ENST00000435425 SEMA6DQ8NFY4 1073 aa15.7■□□□□ 0.1
SHH-203ENST00000435425 RORBQ92753 470 aa15.7■□□□□ 0.1
SHH-203ENST00000435425 RAB39BQ96DA2 213 aa15.7■□□□□ 0.1
SHH-203ENST00000435425 RNPEPL1Q9HAU8 725 aa15.7■□□□□ 0.1
SHH-203ENST00000435425 ACOXLQ9NUZ1 547 aa15.7■□□□□ 0.1
SHH-203ENST00000435425 C1orf123Q9NWV4 160 aa15.7■□□□□ 0.1
SHH-203ENST00000435425 KCNS2Q9ULS6 477 aa15.7■□□□□ 0.1
SHH-203ENST00000435425 PIGLQ9Y2B2 252 aa15.7■□□□□ 0.1
SHH-203ENST00000435425 hCG_1807616A0A1W2PRN6 198 aa15.69■□□□□ 0.1
SHH-203ENST00000435425 ANXA2P2A6NMY6 339 aa15.69■□□□□ 0.1
SHH-203ENST00000435425 LMX1BO60663 402 aa15.69■□□□□ 0.1
SHH-203ENST00000435425 FADS2O95864 444 aaKnown RBP15.69■□□□□ 0.1
SHH-203ENST00000435425 IGLV3-1P01715 115 aa15.69■□□□□ 0.1
SHH-203ENST00000435425 IGHV2-5P01817 119 aa15.69■□□□□ 0.1
SHH-203ENST00000435425 HOXA4Q00056 320 aaPredicted RBP15.69■□□□□ 0.1
SHH-203ENST00000435425 CDONQ4KMG0 1287 aa15.69■□□□□ 0.1
SHH-203ENST00000435425 DMRTC1Q5HYR2 192 aa15.69■□□□□ 0.1
SHH-203ENST00000435425 KCTD8Q6ZWB6 473 aa15.69■□□□□ 0.1
SHH-203ENST00000435425 C1orf87Q8N0U7 546 aa15.69■□□□□ 0.1
SHH-203ENST00000435425 OR52I1Q8NGK6 324 aa15.69■□□□□ 0.1
SHH-203ENST00000435425 NRG4Q8WWG1 115 aa15.69■□□□□ 0.1
SHH-203ENST00000435425 ERGIC1Q969X5 290 aa15.69■□□□□ 0.1
SHH-203ENST00000435425 MICU1Q9BPX6 476 aa15.69■□□□□ 0.1
SHH-203ENST00000435425 MPC1Q9Y5U8 109 aa15.69■□□□□ 0.1
SHH-203ENST00000435425 ABCA2Q9BZC7 2435 aa15.69■□□□□ 0.1
SHH-203ENST00000435425 ZNF816-ZNF321PA0A0X1KG74 233 aa15.68■□□□□ 0.1
SHH-203ENST00000435425 A6NIN4 97 aa15.68■□□□□ 0.1
SHH-203ENST00000435425 B4DSR2 109 aa15.68■□□□□ 0.1
SHH-203ENST00000435425 MTRF1O75570 445 aaKnown RBP15.68■□□□□ 0.1
SHH-203ENST00000435425 CST4P01036 141 aa15.68■□□□□ 0.1
SHH-203ENST00000435425 GNAO1P09471 354 aa15.68■□□□□ 0.1
SHH-203ENST00000435425 FAHP16930 419 aa15.68■□□□□ 0.1
SHH-203ENST00000435425 RIPPLY1Q0D2K3 151 aa15.68■□□□□ 0.1
SHH-203ENST00000435425 RAB40BQ12829 278 aa15.68■□□□□ 0.1
SHH-203ENST00000435425 ZNF181Q2M3W8 571 aa15.68■□□□□ 0.1
SHH-203ENST00000435425 KLHL22Q53GT1 634 aa15.68■□□□□ 0.1
SHH-203ENST00000435425 WDR38Q5JTN6 314 aa15.68■□□□□ 0.1
SHH-203ENST00000435425 CEP78Q5JTW2 689 aa15.68■□□□□ 0.1
SHH-203ENST00000435425 MOB3CQ70IA8 216 aa15.68■□□□□ 0.1
SHH-203ENST00000435425 WDR86Q86TI4 376 aa15.68■□□□□ 0.1
SHH-203ENST00000435425 LRRC28Q86X40 367 aaPredicted RBP15.68■□□□□ 0.1
SHH-203ENST00000435425 ZDHHC23Q8IYP9 409 aa15.68■□□□□ 0.1
SHH-203ENST00000435425 KLHL36Q8N4N3 616 aa15.68■□□□□ 0.1
SHH-203ENST00000435425 DEFB108BQ8NET1 73 aa15.68■□□□□ 0.1
SHH-203ENST00000435425 MRPL48Q96GC5 212 aaKnown RBP15.68■□□□□ 0.1
SHH-203ENST00000435425 RNF170Q96K19 258 aa15.68■□□□□ 0.1
SHH-203ENST00000435425 C4orf36Q96KX1 117 aa15.68■□□□□ 0.1
SHH-203ENST00000435425 HIST1H2AAQ96QV6 131 aa15.68■□□□□ 0.1
SHH-203ENST00000435425 ALG8Q9BVK2 526 aa15.68■□□□□ 0.1
SHH-203ENST00000435425 RTL8AQ9BWD3 113 aa15.68■□□□□ 0.1
SHH-203ENST00000435425 RNF7Q9UBF6 113 aa15.68■□□□□ 0.1
SHH-203ENST00000435425 PPIAL4EA0A075B759 164 aa15.67■□□□□ 0.1
SHH-203ENST00000435425 A0A1B0GTI1 187 aa15.67■□□□□ 0.1
SHH-203ENST00000435425 PPIAL4DF5H284 164 aa15.67■□□□□ 0.1
SHH-203ENST00000435425 H0YAE9 185 aa15.67■□□□□ 0.1
SHH-203ENST00000435425 DHRS3O75911 302 aa15.67■□□□□ 0.1
SHH-203ENST00000435425 PPIAL4FP0DN26 164 aa15.67■□□□□ 0.1
SHH-203ENST00000435425 ATP6V1B1P15313 513 aa15.67■□□□□ 0.1
SHH-203ENST00000435425 CD80P33681 288 aa15.67■□□□□ 0.1
SHH-203ENST00000435425 MDH2P40926 338 aaKnown RBP15.67■□□□□ 0.1
SHH-203ENST00000435425 ISL1P61371 349 aa15.67■□□□□ 0.1
SHH-203ENST00000435425 CSNK2BP67870 215 aa15.67■□□□□ 0.1
SHH-203ENST00000435425 IL18R1Q13478 541 aa15.67■□□□□ 0.1
SHH-203ENST00000435425 GALEQ14376 348 aa15.67■□□□□ 0.1
SHH-203ENST00000435425 KCTD20Q7Z5Y7 419 aa15.67■□□□□ 0.1
SHH-203ENST00000435425 C8orf59Q8N0T1 100 aaPredicted RBP15.67■□□□□ 0.1
SHH-203ENST00000435425 PRSS35Q8N3Z0 413 aa15.67■□□□□ 0.1
SHH-203ENST00000435425 SPICQ8N5J4 248 aa15.67■□□□□ 0.1
SHH-203ENST00000435425 PLPP7Q8NBV4 271 aa15.67■□□□□ 0.1
SHH-203ENST00000435425 OR1M1Q8NGA1 313 aa15.67■□□□□ 0.1
SHH-203ENST00000435425 Q8TCH9 128 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms