RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 ARPC3O15145 178 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 PLPP2O43688 288 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 FARS2O95363 451 aaKnown RBP2.12□□□□□ -2.07
VPS13A-208ENST00000423463 TXNDC12O95881 172 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 CST1P01037 141 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 IGKV3-20P01619 116 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 RAF1P04049 648 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 VPREB1P12018 145 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 NPR2P20594 1047 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 GSTM3P21266 225 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 SLC6A6P31641 620 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 GUCA1AP43080 201 aaPredicted RBP2.12□□□□□ -2.07
VPS13A-208ENST00000423463 GPR4P46093 362 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 CAPZA2P47755 286 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 ZNF83P51522 516 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 ARHGDIAP52565 204 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 PPP5CP53041 499 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 COX10Q12887 443 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 GAGE2BQ13066 116 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 MELKQ14680 651 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 MICAQ29983 383 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 KRTAP24-1Q3LI83 254 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 GAGE2EQ4V326 116 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 HIKESHIQ53FT3 197 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 C10orf128Q5T292 105 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 GAGE2AQ6NT46 116 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 SLC25A47Q6Q0C1 308 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 SMARCD3Q6STE5 483 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 ASRGL1Q7L266 308 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 SPATA24Q86W54 205 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 CLDN22Q8N7P3 220 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 NOXO1Q8NFA2 376 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 OR10S1Q8NGN2 331 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 OR13A1Q8NGR1 328 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 OR13C2Q8NGS9 318 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 ZNF519Q8TB69 540 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 GIPC3Q8TF64 312 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 MCHR2Q969V1 340 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 NRBF2Q96F24 287 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 DUS3LQ96G46 650 aaKnown RBP2.12□□□□□ -2.07
VPS13A-208ENST00000423463 ALKBH3Q96Q83 286 aaPredicted RBP2.12□□□□□ -2.07
VPS13A-208ENST00000423463 GPX7Q96SL4 187 aaPredicted RBP2.12□□□□□ -2.07
VPS13A-208ENST00000423463 DDOQ99489 341 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 GPA33Q99795 319 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 C1QTNF6Q9BXI9 259 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 DGCR6LQ9BY27 220 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 UBTD1Q9HAC8 227 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 SIAEQ9HAT2 523 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 TMEM38BQ9NVV0 291 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 B3GNT2Q9NY97 397 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 RCC2Q9P258 522 aaKnown RBP2.12□□□□□ -2.07
VPS13A-208ENST00000423463 DNAJB9Q9UBS3 223 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 GAGE2DQ9UEU5 116 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 SLC7A8Q9UHI5 535 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 BAIAP2Q9UQB8 552 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 SAMHD1Q9Y3Z3 626 aaKnown RBP2.12□□□□□ -2.07
VPS13A-208ENST00000423463 AHNAKQ09666 5890 aaKnown RBP2.12□□□□□ -2.07
VPS13A-208ENST00000423463 HECTD1Q9ULT8 2610 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 CACNA1DQ01668 2161 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 MPDZO75970 2070 aa2.12□□□□□ -2.07
VPS13A-208ENST00000423463 A0A1W2PR80 420 aa2.11□□□□□ -2.07
VPS13A-208ENST00000423463 PRSS37A4D1T9 235 aa2.11□□□□□ -2.07
VPS13A-208ENST00000423463 ARRDC5A6NEK1 342 aa2.11□□□□□ -2.07
VPS13A-208ENST00000423463 SHISA9B4DS77 424 aa2.11□□□□□ -2.07
VPS13A-208ENST00000423463 ABCD4O14678 606 aa2.11□□□□□ -2.07
VPS13A-208ENST00000423463 ARHGEF9O43307 516 aa2.11□□□□□ -2.07
VPS13A-208ENST00000423463 FKBP6O75344 327 aa2.11□□□□□ -2.07
VPS13A-208ENST00000423463 KHDRBS3O75525 346 aaKnown RBP2.11□□□□□ -2.07
VPS13A-208ENST00000423463 CIB2O75838 187 aa2.11□□□□□ -2.07
VPS13A-208ENST00000423463 UBL3O95164 117 aa2.11□□□□□ -2.07
VPS13A-208ENST00000423463 PTHP01270 115 aa2.11□□□□□ -2.07
VPS13A-208ENST00000423463 IGKV3-15P01624 115 aa2.11□□□□□ -2.07
VPS13A-208ENST00000423463 IGLV1-44P01699 117 aa2.11□□□□□ -2.07
VPS13A-208ENST00000423463 CRYAAP02489 173 aa2.11□□□□□ -2.07
VPS13A-208ENST00000423463 ANXA8P13928 327 aa2.11□□□□□ -2.07
VPS13A-208ENST00000423463 ZNF26P17031 533 aaPredicted RBP2.11□□□□□ -2.07
VPS13A-208ENST00000423463 IST1P53990 364 aa2.11□□□□□ -2.07
VPS13A-208ENST00000423463 RAD23AP54725 363 aa2.11□□□□□ -2.07
VPS13A-208ENST00000423463 ERVK-25P63136 954 aa2.11□□□□□ -2.07
VPS13A-208ENST00000423463 CBX1P83916 185 aa2.11□□□□□ -2.07
VPS13A-208ENST00000423463 RUNX1T1Q06455 604 aa2.11□□□□□ -2.07
VPS13A-208ENST00000423463 BSPH1Q075Z2 132 aa2.11□□□□□ -2.07
VPS13A-208ENST00000423463 CD47Q08722 323 aa2.11□□□□□ -2.07
VPS13A-208ENST00000423463 SGCAQ16586 387 aa2.11□□□□□ -2.07
VPS13A-208ENST00000423463 GSG1Q2KHT4 349 aa2.11□□□□□ -2.07
VPS13A-208ENST00000423463 SLC36A2Q495M3 483 aa2.11□□□□□ -2.07
VPS13A-208ENST00000423463 FAM27BQ5VT28 67 aa2.11□□□□□ -2.07
VPS13A-208ENST00000423463 C1orf146Q5VVC0 180 aa2.11□□□□□ -2.07
VPS13A-208ENST00000423463 ZNF770Q6IQ21 691 aaPredicted RBP2.11□□□□□ -2.07
VPS13A-208ENST00000423463 ZNF544Q6NX49 715 aa2.11□□□□□ -2.07
VPS13A-208ENST00000423463 TMEM53Q6P2H8 277 aa2.11□□□□□ -2.07
VPS13A-208ENST00000423463 PAMR1Q6UXH9 720 aa2.11□□□□□ -2.07
VPS13A-208ENST00000423463 RASSF6Q6ZTQ3 369 aa2.11□□□□□ -2.07
VPS13A-208ENST00000423463 FAM122BQ7Z309 247 aa2.11□□□□□ -2.07
VPS13A-208ENST00000423463 ADCK1Q86TW2 530 aa2.11□□□□□ -2.07
VPS13A-208ENST00000423463 MEX3DQ86XN8 651 aaKnown RBP2.11□□□□□ -2.07
VPS13A-208ENST00000423463 WDFY1Q8IWB7 410 aa2.11□□□□□ -2.07
VPS13A-208ENST00000423463 SKA3Q8IX90 412 aa2.11□□□□□ -2.07
VPS13A-208ENST00000423463 LRRC75A-AS1Q8N1F1 130 aa2.11□□□□□ -2.07
VPS13A-208ENST00000423463 SLC22A24Q8N4F4 322 aa2.11□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms