RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 NUP188Q5SRE5 1749 aa10.71□□□□□ -0.69
SYNPO-202ENST00000394243 HSPB2A8KAH6 182 aa10.71□□□□□ -0.69
SYNPO-202ENST00000394243 SH2D1BO14796 132 aa10.71□□□□□ -0.69
SYNPO-202ENST00000394243 CRISP2P16562 243 aa10.71□□□□□ -0.69
SYNPO-202ENST00000394243 CEBPBP17676 345 aa10.71□□□□□ -0.69
SYNPO-202ENST00000394243 RPL7P18124 248 aaKnown RBP10.71□□□□□ -0.69
SYNPO-202ENST00000394243 EIF1P41567 113 aaKnown RBP10.71□□□□□ -0.69
SYNPO-202ENST00000394243 MVDP53602 400 aa10.71□□□□□ -0.69
SYNPO-202ENST00000394243 HSPB2Q16082 182 aa10.71□□□□□ -0.69
SYNPO-202ENST00000394243 SNCGO76070 127 aa10.71□□□□□ -0.7
SYNPO-202ENST00000394243 PCMT1P22061 227 aa10.71□□□□□ -0.7
SYNPO-202ENST00000394243 INPP5JQ15735 1006 aaPredicted RBP10.71□□□□□ -0.7
SYNPO-202ENST00000394243 PNLIPRP3Q17RR3 467 aa10.71□□□□□ -0.7
SYNPO-202ENST00000394243 ARRDC1Q8N5I2 433 aa10.71□□□□□ -0.7
SYNPO-202ENST00000394243 OR2D3Q8NGH3 330 aa10.71□□□□□ -0.7
SYNPO-202ENST00000394243 SULT1A1P50225 295 aa10.71□□□□□ -0.7
SYNPO-202ENST00000394243 SSR4P51571 173 aa10.71□□□□□ -0.7
SYNPO-202ENST00000394243 HTRA3P83110 453 aa10.71□□□□□ -0.7
SYNPO-202ENST00000394243 BTNL3Q6UXE8 466 aa10.71□□□□□ -0.7
SYNPO-202ENST00000394243 PRSS3P2Q8NHM4 247 aa10.71□□□□□ -0.7
SYNPO-202ENST00000394243 FBXL17Q9UF56 701 aa10.71□□□□□ -0.7
SYNPO-202ENST00000394243 PIK3C2AO00443 1686 aa10.71□□□□□ -0.7
SYNPO-202ENST00000394243 C7orf77A4D0Y5 90 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 H3BNC9 293 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 TMEM127O75204 238 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 TBC1D28Q2M2D7 210 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 FAM109BQ6ICB4 259 aaPredicted RBP10.7□□□□□ -0.7
SYNPO-202ENST00000394243 KLHDC9Q8NEP7 349 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 OR2T10Q8NGZ9 312 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 Q9N2K0 584 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 RAB29O14966 203 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 MAML2Q8IZL2 1156 aaPredicted RBP10.7□□□□□ -0.7
SYNPO-202ENST00000394243 NXPE3Q969Y0 559 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 NTNG2Q96CW9 530 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 RTL8AQ9BWD3 113 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 DHCR7Q9UBM7 475 aaKnown RBP10.7□□□□□ -0.7
SYNPO-202ENST00000394243 ST3GAL6Q9Y274 331 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 DUXBA0A1W2PPF3 345 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 PRSS37A4D1T9 235 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 M0R135 149 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 ZNF799Q96GE5 643 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 MTFP1Q9UDX5 166 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 MAP1LC3B2A6NCE7 125 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 GALR2O43603 387 aaPredicted RBP10.7□□□□□ -0.7
SYNPO-202ENST00000394243 GPANK1O95872 356 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 SUCLG1P53597 346 aaKnown RBP10.7□□□□□ -0.7
SYNPO-202ENST00000394243 KCNAB1Q14722 419 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 OR8G1Q15617 311 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 C12orf73Q69YU5 71 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 TSEN54Q7Z6J9 526 aaKnown RBP10.7□□□□□ -0.7
SYNPO-202ENST00000394243 OR52N5Q8NH56 324 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 STARD4Q96DR4 205 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 TEX101Q9BY14 249 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 MAP1LC3BQ9GZQ8 125 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 LPAR5Q9H1C0 372 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 PCED1AQ9H1Q7 454 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 LSM2Q9Y333 95 aaKnown RBP10.7□□□□□ -0.7
SYNPO-202ENST00000394243 NKX6-3A6NJ46 265 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 GABRA1P14867 456 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 ELOBQ15370 118 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 LYRM7Q5U5X0 104 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 FBXL6Q8N531 539 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 MS4A6EQ96DS6 147 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 TIMM9Q9Y5J7 89 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 CDRT15L2A8MXV6 281 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 SFT2D2O95562 160 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 DUS4LO95620 317 aaKnown RBP10.7□□□□□ -0.7
SYNPO-202ENST00000394243 SLC6A1P30531 599 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 GNG4P50150 75 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 LRFN3Q9BTN0 628 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 S1PR5Q9H228 398 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 C19orf53Q9UNZ5 99 aaPredicted RBP10.7□□□□□ -0.7
SYNPO-202ENST00000394243 LIPGQ9Y5X9 500 aa10.7□□□□□ -0.7
SYNPO-202ENST00000394243 LAMA4Q16363 1823 aa10.69□□□□□ -0.7
SYNPO-202ENST00000394243 K7ERU9 68 aa10.69□□□□□ -0.7
SYNPO-202ENST00000394243 SPCS3P61009 180 aa10.69□□□□□ -0.7
SYNPO-202ENST00000394243 ZNF628Q5EBL2 1059 aa10.69□□□□□ -0.7
SYNPO-202ENST00000394243 LYSMD4Q5XG99 296 aa10.69□□□□□ -0.7
SYNPO-202ENST00000394243 ARHGEF39Q8N4T4 335 aa10.69□□□□□ -0.7
SYNPO-202ENST00000394243 OR11H7Q8NGC8 314 aa10.69□□□□□ -0.7
SYNPO-202ENST00000394243 ABHD1Q96SE0 405 aa10.69□□□□□ -0.7
SYNPO-202ENST00000394243 C12orf49Q9H741 205 aa10.69□□□□□ -0.7
SYNPO-202ENST00000394243 NTMQ9P121 344 aa10.69□□□□□ -0.7
SYNPO-202ENST00000394243 TMPRSS11DO60235 418 aa10.69□□□□□ -0.7
SYNPO-202ENST00000394243 EIF4E2O60573 245 aaKnown RBP10.69□□□□□ -0.7
SYNPO-202ENST00000394243 SBK3P0C264 359 aa10.69□□□□□ -0.7
SYNPO-202ENST00000394243 NDUFB7P17568 137 aa10.69□□□□□ -0.7
SYNPO-202ENST00000394243 BMP5P22003 454 aa10.69□□□□□ -0.7
SYNPO-202ENST00000394243 APOBEC1P41238 236 aaKnown RBP10.69□□□□□ -0.7
SYNPO-202ENST00000394243 AGFG1P52594 562 aaKnown RBP10.69□□□□□ -0.7
SYNPO-202ENST00000394243 DLK1P80370 383 aa10.69□□□□□ -0.7
SYNPO-202ENST00000394243 RTL8BQ17RB0 113 aa10.69□□□□□ -0.7
SYNPO-202ENST00000394243 SLC39A5Q6ZMH5 540 aa10.69□□□□□ -0.7
SYNPO-202ENST00000394243 BCORP1Q8N888 145 aa10.69□□□□□ -0.7
SYNPO-202ENST00000394243 TOE1Q96GM8 510 aaKnown RBP10.69□□□□□ -0.7
SYNPO-202ENST00000394243 CHST6Q9GZX3 395 aa10.69□□□□□ -0.7
SYNPO-202ENST00000394243 DECR2Q9NUI1 292 aa10.69□□□□□ -0.7
SYNPO-202ENST00000394243 TMEM272A0A1B0GTI8 110 aa10.69□□□□□ -0.7
SYNPO-202ENST00000394243 WDR73Q6P4I2 378 aa10.69□□□□□ -0.7
SYNPO-202ENST00000394243 TAAR6Q96RI8 345 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms