RNA–Protein interactions for RNA: ENST00000367255.9

SYNE1-207, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SYNE1, Length 27,748 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-207ENST00000367255 CORTO00230 105 aa3.4□□□□□ -1.87
SYNE1-207ENST00000367255 MMP10P09238 476 aa3.4□□□□□ -1.87
SYNE1-207ENST00000367255 CDK5R1Q15078 307 aa3.4□□□□□ -1.87
SYNE1-207ENST00000367255 Q6ZN92 141 aa3.4□□□□□ -1.87
SYNE1-207ENST00000367255 GJD4Q96KN9 370 aaPredicted RBP3.4□□□□□ -1.87
SYNE1-207ENST00000367255 NMUR1Q9HB89 426 aa3.4□□□□□ -1.87
SYNE1-207ENST00000367255 IKZF2Q9UKS7 526 aa3.4□□□□□ -1.87
SYNE1-207ENST00000367255 TMEM97Q5BJF2 176 aa3.4□□□□□ -1.87
SYNE1-207ENST00000367255 WIPI1Q5MNZ9 446 aaPredicted RBP3.4□□□□□ -1.87
SYNE1-207ENST00000367255 PUSL1Q8N0Z8 303 aaKnown RBP3.4□□□□□ -1.87
SYNE1-207ENST00000367255 PIGCQ92535 297 aa3.4□□□□□ -1.87
SYNE1-207ENST00000367255 B4GALT6Q9UBX8 382 aa3.4□□□□□ -1.87
SYNE1-207ENST00000367255 C2orf72A6NCS6 295 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 ZNF728P0DKX0 622 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 BCL2P10415 239 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 CSF2RBP32927 897 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 OR4D9Q8NGE8 314 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 SHISA4Q96DD7 197 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 C11orf54Q9H0W9 315 aaPredicted RBP3.39□□□□□ -1.87
SYNE1-207ENST00000367255 G3V3Y1 287 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 COCHO43405 550 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 MYOGP15173 224 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 ZXDBP98169 803 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 LYPD4Q6UWN0 246 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 LINC00518Q8N0U6 118 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 SHDQ96IW2 340 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 SMIM7Q9BQ49 75 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 RSRP1Q9BUV0 290 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 A0A1B0GTH9 108 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 YPEL1O60688 119 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 MMP11P24347 488 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 ARL3P36405 182 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 ARFRP1Q13795 201 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 FAM210BQ96KR6 192 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 CTSFQ9UBX1 484 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 RBFOX2O43251 390 aaKnown RBP eCLIP3.39□□□□□ -1.87
SYNE1-207ENST00000367255 PQLC2Q6ZP29 291 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 OR6N2Q8NGY6 317 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 ZNF217O75362 1048 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 C8orf89P0DMQ9 161 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 LSSP48449 732 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 PYY3Q5JQD4 70 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 C9orf62Q8N4C0 152 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 OR4X2Q8NGF9 303 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 TRIB1Q96RU8 372 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 CDX2Q99626 313 aaPredicted RBP3.39□□□□□ -1.87
SYNE1-207ENST00000367255 GTSF1LQ9H1H1 148 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 GLI3P10071 1580 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 SMPD1P17405 629 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 ENPP1P22413 925 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 SLC6A9P48067 706 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 CPSF6Q16630 551 aaKnown RBP eCLIP3.39□□□□□ -1.87
SYNE1-207ENST00000367255 NLRC3Q7RTR2 1065 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 GJC3Q8NFK1 279 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 OR2AE1Q8NHA4 323 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 SPPL3Q8TCT6 385 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 TMEM59Q9BXS4 323 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 THYN1Q9P016 225 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 COX11Q9Y6N1 276 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 SULT1A1P50225 295 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 MRPS6P82932 125 aaKnown RBP3.39□□□□□ -1.87
SYNE1-207ENST00000367255 Q6ZRG5 221 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 DOLPP1Q86YN1 238 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 EBPLQ9BY08 206 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 ZNF331Q9NQX6 463 aaPredicted RBP3.39□□□□□ -1.87
SYNE1-207ENST00000367255 LILRA4P59901 499 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 TMEM164Q5U3C3 297 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 OR9G1Q8NH87 305 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 MYEOVQ96EZ4 313 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 TSPAN32Q96QS1 320 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 P2RY12Q9H244 342 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 SIDT1Q9NXL6 827 aaKnown RBP3.39□□□□□ -1.87
SYNE1-207ENST00000367255 KCNMB2Q9Y691 235 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 IGLV3-16A0A075B6K0 115 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 ISG15P05161 165 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 CRMP1Q14194 572 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 TCTN3Q6NUS6 607 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 NHLRC1Q6VVB1 395 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 BAGE3Q86Y29 109 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 BAGE2Q86Y30 109 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 YAF2Q8IY57 180 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 DNAJC5GQ8N7S2 189 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 OR51E1Q8TCB6 317 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 MZB1Q8WU39 189 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 OR2D2Q9H210 308 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 METTL7AQ9H8H3 244 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 DEC1Q9P2X7 70 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 TRBV20-1A0A075B6N2 111 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 TRBV5-4A0A0C4DH59 114 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 FXYD1O00168 92 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 HMGN2P05204 90 aaKnown RBP3.39□□□□□ -1.87
SYNE1-207ENST00000367255 ZNF705BP0CI00 300 aaPredicted RBP3.39□□□□□ -1.87
SYNE1-207ENST00000367255 ACP5P13686 325 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 TRHRP34981 398 aaPredicted RBP3.39□□□□□ -1.87
SYNE1-207ENST00000367255 RNF39Q9H2S5 420 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 FOXD3Q9UJU5 478 aaPredicted RBP3.39□□□□□ -1.87
SYNE1-207ENST00000367255 MYH11P35749 1972 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 ATF1P18846 271 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 PIGTQ969N2 578 aa3.39□□□□□ -1.87
SYNE1-207ENST00000367255 RSG1Q9BU20 258 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms