RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 FOXL2NBQ6ZUU3 175 aa19.14■□□□□ 0.66
SHMT1-202ENST00000352886 OR56B1Q8NGI3 324 aa19.14■□□□□ 0.66
SHMT1-202ENST00000352886 ARHGAP5-AS1Q96IT6 56 aa19.14■□□□□ 0.66
SHMT1-202ENST00000352886 REG4Q9BYZ8 158 aa19.14■□□□□ 0.66
SHMT1-202ENST00000352886 CBR3O75828 277 aa19.14■□□□□ 0.65
SHMT1-202ENST00000352886 AVPR2P30518 371 aa19.14■□□□□ 0.65
SHMT1-202ENST00000352886 ECH1Q13011 328 aa19.14■□□□□ 0.65
SHMT1-202ENST00000352886 FAHD2BQ6P2I3 314 aaPredicted RBP19.14■□□□□ 0.65
SHMT1-202ENST00000352886 ESX1Q8N693 406 aa19.14■□□□□ 0.65
SHMT1-202ENST00000352886 PNLDC1Q8NA58 520 aaKnown RBP19.14■□□□□ 0.65
SHMT1-202ENST00000352886 MARCH1Q8TCQ1 289 aa19.14■□□□□ 0.65
SHMT1-202ENST00000352886 FAHD2AQ96GK7 314 aa19.14■□□□□ 0.65
SHMT1-202ENST00000352886 URM1Q9BTM9 101 aaKnown RBP19.14■□□□□ 0.65
SHMT1-202ENST00000352886 FREM2Q5SZK8 3169 aa19.14■□□□□ 0.65
SHMT1-202ENST00000352886 FAM25EA8MYX2 175 aa19.13■□□□□ 0.65
SHMT1-202ENST00000352886 EFSO43281 561 aa19.13■□□□□ 0.65
SHMT1-202ENST00000352886 UBBP0CG47 229 aa19.13■□□□□ 0.65
SHMT1-202ENST00000352886 RAC1P63000 192 aa19.13■□□□□ 0.65
SHMT1-202ENST00000352886 RSPO1Q2MKA7 263 aaPredicted RBP19.13■□□□□ 0.65
SHMT1-202ENST00000352886 C11orf87Q6NUJ2 197 aa19.13■□□□□ 0.65
SHMT1-202ENST00000352886 DTX1Q86Y01 620 aa19.13■□□□□ 0.65
SHMT1-202ENST00000352886 ZIC4Q8N9L1 334 aa19.13■□□□□ 0.65
SHMT1-202ENST00000352886 PPP1R1CQ8WVI7 109 aa19.13■□□□□ 0.65
SHMT1-202ENST00000352886 PIGQQ9BRB3 760 aa19.13■□□□□ 0.65
SHMT1-202ENST00000352886 SRXN1Q9BYN0 137 aa19.13■□□□□ 0.65
SHMT1-202ENST00000352886 ULBP2Q9BZM5 246 aa19.13■□□□□ 0.65
SHMT1-202ENST00000352886 FOXD3Q9UJU5 478 aaPredicted RBP19.13■□□□□ 0.65
SHMT1-202ENST00000352886 DHRS3O75911 302 aa19.13■□□□□ 0.65
SHMT1-202ENST00000352886 FAHP16930 419 aa19.13■□□□□ 0.65
SHMT1-202ENST00000352886 HLA-GP17693 338 aa19.13■□□□□ 0.65
SHMT1-202ENST00000352886 TMEM65Q6PI78 240 aa19.13■□□□□ 0.65
SHMT1-202ENST00000352886 C1QL2Q7Z5L3 287 aa19.13■□□□□ 0.65
SHMT1-202ENST00000352886 HOGA1Q86XE5 327 aa19.13■□□□□ 0.65
SHMT1-202ENST00000352886 MAML2Q8IZL2 1156 aaPredicted RBP19.13■□□□□ 0.65
SHMT1-202ENST00000352886 ZNF775Q96BV0 537 aaPredicted RBP19.13■□□□□ 0.65
SHMT1-202ENST00000352886 ZNF837Q96EG3 531 aaPredicted RBP19.13■□□□□ 0.65
SHMT1-202ENST00000352886 NUP50Q9UKX7 468 aa19.13■□□□□ 0.65
SHMT1-202ENST00000352886 ANAPC10Q9UM13 185 aa19.13■□□□□ 0.65
SHMT1-202ENST00000352886 A0A0U1RQV5 110 aa19.12■□□□□ 0.65
SHMT1-202ENST00000352886 MFSD2BA6NFX1 497 aa19.12■□□□□ 0.65
SHMT1-202ENST00000352886 MFNGO00587 321 aa19.12■□□□□ 0.65
SHMT1-202ENST00000352886 RLN2P04090 185 aa19.12■□□□□ 0.65
SHMT1-202ENST00000352886 DBHP09172 617 aa19.12■□□□□ 0.65
SHMT1-202ENST00000352886 PRF1P14222 555 aa19.12■□□□□ 0.65
SHMT1-202ENST00000352886 PTGFRP43088 359 aa19.12■□□□□ 0.65
SHMT1-202ENST00000352886 CRIP3Q6Q6R5 217 aa19.12■□□□□ 0.65
SHMT1-202ENST00000352886 FBXW5Q969U6 566 aa19.12■□□□□ 0.65
SHMT1-202ENST00000352886 OR10A2Q9H208 303 aa19.12■□□□□ 0.65
SHMT1-202ENST00000352886 PLEK2Q9NYT0 353 aa19.12■□□□□ 0.65
SHMT1-202ENST00000352886 COLQQ9Y215 455 aaPredicted RBP19.12■□□□□ 0.65
SHMT1-202ENST00000352886 NCKAP5O14513 1909 aa19.12■□□□□ 0.65
SHMT1-202ENST00000352886 WDFY4Q6ZS81 3184 aa19.12■□□□□ 0.65
SHMT1-202ENST00000352886 THBS4P35443 961 aa19.12■□□□□ 0.65
SHMT1-202ENST00000352886 HIST1H3AP68431 136 aa19.12■□□□□ 0.65
SHMT1-202ENST00000352886 UBE2V2Q15819 145 aa19.12■□□□□ 0.65
SHMT1-202ENST00000352886 FAM189A2Q15884 450 aa19.12■□□□□ 0.65
SHMT1-202ENST00000352886 HIST2H3PS2Q5TEC6 136 aa19.12■□□□□ 0.65
SHMT1-202ENST00000352886 HIST2H3AQ71DI3 136 aa19.12■□□□□ 0.65
SHMT1-202ENST00000352886 KCTD9Q7L273 389 aa19.12■□□□□ 0.65
SHMT1-202ENST00000352886 OR51T1Q8NGJ9 327 aa19.12■□□□□ 0.65
SHMT1-202ENST00000352886 MED9Q9NWA0 146 aa19.12■□□□□ 0.65
SHMT1-202ENST00000352886 V9GYS6 101 aa19.12■□□□□ 0.65
SHMT1-202ENST00000352886 A0A0D9SG52 128 aa19.11■□□□□ 0.65
SHMT1-202ENST00000352886 STMND1H3BQB6 276 aa19.11■□□□□ 0.65
SHMT1-202ENST00000352886 M0R135 149 aa19.11■□□□□ 0.65
SHMT1-202ENST00000352886 ATP1B3P54709 279 aa19.11■□□□□ 0.65
SHMT1-202ENST00000352886 RPS18P62269 152 aaKnown RBP19.11■□□□□ 0.65
SHMT1-202ENST00000352886 ARFRP1Q13795 201 aa19.11■□□□□ 0.65
SHMT1-202ENST00000352886 PNLIPRP3Q17RR3 467 aa19.11■□□□□ 0.65
SHMT1-202ENST00000352886 RSPO4Q2I0M5 234 aaPredicted RBP19.11■□□□□ 0.65
SHMT1-202ENST00000352886 OR5M9Q8NGP3 310 aa19.11■□□□□ 0.65
SHMT1-202ENST00000352886 TERB2Q8NHR7 220 aa19.11■□□□□ 0.65
SHMT1-202ENST00000352886 ZNF799Q96GE5 643 aa19.11■□□□□ 0.65
SHMT1-202ENST00000352886 TNFSF18Q9UNG2 199 aa19.11■□□□□ 0.65
SHMT1-202ENST00000352886 A0A0G2JMM0 328 aa19.11■□□□□ 0.65
SHMT1-202ENST00000352886 A0A1W2PPB8 328 aa19.11■□□□□ 0.65
SHMT1-202ENST00000352886 A0A1W2PRS3 328 aa19.11■□□□□ 0.65
SHMT1-202ENST00000352886 C19orf67A6NJJ6 358 aa19.11■□□□□ 0.65
SHMT1-202ENST00000352886 KIR3DP1A8MWS1 328 aa19.11■□□□□ 0.65
SHMT1-202ENST00000352886 SLC25A4P12235 298 aa19.11■□□□□ 0.65
SHMT1-202ENST00000352886 MGMTP16455 207 aa19.11■□□□□ 0.65
SHMT1-202ENST00000352886 OTX1P32242 354 aaPredicted RBP19.11■□□□□ 0.65
SHMT1-202ENST00000352886 ZNF84P51523 738 aa19.11■□□□□ 0.65
SHMT1-202ENST00000352886 RPS27AP62979 156 aaKnown RBP19.11■□□□□ 0.65
SHMT1-202ENST00000352886 FBXO17Q96EF6 278 aa19.11■□□□□ 0.65
SHMT1-202ENST00000352886 DMRTA2Q96SC8 542 aa19.11■□□□□ 0.65
SHMT1-202ENST00000352886 PIGLQ9Y2B2 252 aa19.11■□□□□ 0.65
SHMT1-202ENST00000352886 KCNMB2Q9Y691 235 aa19.11■□□□□ 0.65
SHMT1-202ENST00000352886 DUS4LO95620 317 aaKnown RBP19.1■□□□□ 0.65
SHMT1-202ENST00000352886 ATXN7L3Q14CW9 347 aaPredicted RBP19.1■□□□□ 0.65
SHMT1-202ENST00000352886 VAX1Q5SQQ9 334 aa19.1■□□□□ 0.65
SHMT1-202ENST00000352886 YRDCQ86U90 279 aaKnown RBP19.1■□□□□ 0.65
SHMT1-202ENST00000352886 OCSTAMPQ9BR26 566 aa19.1■□□□□ 0.65
SHMT1-202ENST00000352886 PFDN2Q9UHV9 154 aa19.1■□□□□ 0.65
SHMT1-202ENST00000352886 GJE1A6NN92 205 aa19.1■□□□□ 0.65
SHMT1-202ENST00000352886 SUCLG1P53597 346 aaKnown RBP19.1■□□□□ 0.65
SHMT1-202ENST00000352886 ACTBL2Q562R1 376 aa19.1■□□□□ 0.65
SHMT1-202ENST00000352886 C20orf196Q8IYI0 205 aa19.1■□□□□ 0.65
SHMT1-202ENST00000352886 FAM89BQ8N5H3 189 aa19.1■□□□□ 0.65
SHMT1-202ENST00000352886 KCNRGQ8N5I3 272 aa19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms