RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 IFNA21P01568 189 aa10.62□□□□□ -0.71
USP1-201ENST00000339950 DAOP14920 347 aa10.62□□□□□ -0.71
USP1-201ENST00000339950 GNRHRP30968 328 aa10.62□□□□□ -0.71
USP1-201ENST00000339950 LTBRP36941 435 aa10.62□□□□□ -0.71
USP1-201ENST00000339950 FHL1Q13642 323 aa10.62□□□□□ -0.71
USP1-201ENST00000339950 BATFQ16520 125 aa10.62□□□□□ -0.71
USP1-201ENST00000339950 OR51F2Q8NH61 342 aa10.62□□□□□ -0.71
USP1-201ENST00000339950 USB1Q9BQ65 265 aaKnown RBP10.62□□□□□ -0.71
USP1-201ENST00000339950 MAGT1Q9H0U3 335 aa10.62□□□□□ -0.71
USP1-201ENST00000339950 S1PR5Q9H228 398 aa10.62□□□□□ -0.71
USP1-201ENST00000339950 TRANK1O15050 2925 aa10.62□□□□□ -0.71
USP1-201ENST00000339950 ALPK3Q96L96 1907 aa10.61□□□□□ -0.71
USP1-201ENST00000339950 BGLAPP02818 100 aa10.61□□□□□ -0.71
USP1-201ENST00000339950 CAMLGP49069 296 aa10.61□□□□□ -0.71
USP1-201ENST00000339950 AFF3P51826 1226 aaKnown RBP10.61□□□□□ -0.71
USP1-201ENST00000339950 SLC25A1P53007 311 aa10.61□□□□□ -0.71
USP1-201ENST00000339950 CCL7P80098 99 aa10.61□□□□□ -0.71
USP1-201ENST00000339950 DCDP81605 110 aaKnown RBP10.61□□□□□ -0.71
USP1-201ENST00000339950 ZNF565Q8N9K5 539 aa10.61□□□□□ -0.71
USP1-201ENST00000339950 PHYHIPQ92561 330 aa10.61□□□□□ -0.71
USP1-201ENST00000339950 SLC19A3Q9BZV2 496 aa10.61□□□□□ -0.71
USP1-201ENST00000339950 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.61□□□□□ -0.71
USP1-201ENST00000339950 LANCL2Q9NS86 450 aa10.61□□□□□ -0.71
USP1-201ENST00000339950 ZNF629Q9UEG4 869 aaPredicted RBP10.61□□□□□ -0.71
USP1-201ENST00000339950 KCNK7Q9Y2U2 307 aa10.61□□□□□ -0.71
USP1-201ENST00000339950 PLSCR5A0PG75 271 aa10.61□□□□□ -0.71
USP1-201ENST00000339950 ALG1L2C9J202 215 aa10.61□□□□□ -0.71
USP1-201ENST00000339950 H7C1Q1 480 aa10.61□□□□□ -0.71
USP1-201ENST00000339950 OR8U9P0C7N5 309 aa10.61□□□□□ -0.71
USP1-201ENST00000339950 TPT1P13693 172 aaKnown RBP10.61□□□□□ -0.71
USP1-201ENST00000339950 NQO2P16083 231 aa10.61□□□□□ -0.71
USP1-201ENST00000339950 IKZF1Q13422 519 aa10.61□□□□□ -0.71
USP1-201ENST00000339950 CDH26Q8IXH8 852 aa10.61□□□□□ -0.71
USP1-201ENST00000339950 RSRP1Q9BUV0 290 aa10.61□□□□□ -0.71
USP1-201ENST00000339950 A6NIZ1 184 aa10.61□□□□□ -0.71
USP1-201ENST00000339950 VSIG8P0DPA2 414 aa10.61□□□□□ -0.71
USP1-201ENST00000339950 CCL4P13236 92 aa10.61□□□□□ -0.71
USP1-201ENST00000339950 RAG2P55895 527 aa10.61□□□□□ -0.71
USP1-201ENST00000339950 RAP1BP61224 184 aa10.61□□□□□ -0.71
USP1-201ENST00000339950 RAP1AP62834 184 aa10.61□□□□□ -0.71
USP1-201ENST00000339950 CPEB4Q17RY0 729 aaKnown RBP eCLIP10.61□□□□□ -0.71
USP1-201ENST00000339950 C9orf152Q5JTZ5 239 aa10.61□□□□□ -0.71
USP1-201ENST00000339950 LINC00696Q6ZRV3 163 aa10.61□□□□□ -0.71
USP1-201ENST00000339950 SSX9Q7RTT3 188 aa10.61□□□□□ -0.71
USP1-201ENST00000339950 OR5L2Q8NGL0 311 aa10.61□□□□□ -0.71
USP1-201ENST00000339950 GAREM1Q9H706 876 aa10.61□□□□□ -0.71
USP1-201ENST00000339950 SNRPGP15A8MWD9 76 aa10.6□□□□□ -0.71
USP1-201ENST00000339950 CD79AP11912 226 aa10.6□□□□□ -0.71
USP1-201ENST00000339950 HTR5AP47898 357 aa10.6□□□□□ -0.71
USP1-201ENST00000339950 DMWDQ09019 674 aa10.6□□□□□ -0.71
USP1-201ENST00000339950 SGCZQ96LD1 299 aa10.6□□□□□ -0.71
USP1-201ENST00000339950 OCIAD1Q9NX40 245 aa10.6□□□□□ -0.71
USP1-201ENST00000339950 RAB22AQ9UL26 194 aa10.6□□□□□ -0.71
USP1-201ENST00000339950 TRBV23-1A0A0A0MS06 115 aa10.6□□□□□ -0.71
USP1-201ENST00000339950 TNFSF11O14788 317 aa10.6□□□□□ -0.71
USP1-201ENST00000339950 NDUFA6P56556 154 aa10.6□□□□□ -0.71
USP1-201ENST00000339950 RPS16P62249 146 aaKnown RBP10.6□□□□□ -0.71
USP1-201ENST00000339950 EIF5AP63241 154 aaKnown RBP10.6□□□□□ -0.71
USP1-201ENST00000339950 ZNF660Q6AZW8 331 aaPredicted RBP10.6□□□□□ -0.71
USP1-201ENST00000339950 SULF2Q8IWU5 870 aa10.6□□□□□ -0.71
USP1-201ENST00000339950 SECTM1Q8WVN6 248 aa10.6□□□□□ -0.71
USP1-201ENST00000339950 ISOC2Q96AB3 205 aa10.6□□□□□ -0.71
USP1-201ENST00000339950 NECAB3Q96P71 396 aaPredicted RBP10.6□□□□□ -0.71
USP1-201ENST00000339950 ZNF2Q9BSG1 426 aaPredicted RBP10.6□□□□□ -0.71
USP1-201ENST00000339950 KCNJ16Q9NPI9 418 aa10.6□□□□□ -0.71
USP1-201ENST00000339950 C5orf63A6NC05 138 aa10.6□□□□□ -0.71
USP1-201ENST00000339950 H3BP45 60 aa10.6□□□□□ -0.71
USP1-201ENST00000339950 TP53I11O14683 189 aa10.6□□□□□ -0.71
USP1-201ENST00000339950 HSPA12AO43301 675 aa10.6□□□□□ -0.71
USP1-201ENST00000339950 S100PP25815 95 aa10.6□□□□□ -0.71
USP1-201ENST00000339950 CBX5P45973 191 aa10.6□□□□□ -0.71
USP1-201ENST00000339950 IL10RAQ13651 578 aa10.6□□□□□ -0.71
USP1-201ENST00000339950 MOB3CQ70IA8 216 aa10.6□□□□□ -0.71
USP1-201ENST00000339950 SLC25A45Q8N413 288 aa10.6□□□□□ -0.71
USP1-201ENST00000339950 BORCS8Q96FH0 119 aa10.6□□□□□ -0.71
USP1-201ENST00000339950 FAAP24Q9BTP7 215 aa10.6□□□□□ -0.71
USP1-201ENST00000339950 ZNF426Q9BUY5 554 aa10.6□□□□□ -0.71
USP1-201ENST00000339950 MRI1Q9BV20 369 aa10.6□□□□□ -0.71
USP1-201ENST00000339950 MMACHCQ9Y4U1 282 aa10.6□□□□□ -0.71
USP1-201ENST00000339950 ABCA4P78363 2273 aa10.6□□□□□ -0.71
USP1-201ENST00000339950 TRAV39A0A0B4J263 110 aa10.59□□□□□ -0.71
USP1-201ENST00000339950 EIF4E2O60573 245 aaKnown RBP10.59□□□□□ -0.71
USP1-201ENST00000339950 NAGAP17050 411 aa10.59□□□□□ -0.71
USP1-201ENST00000339950 RCC1P18754 421 aaPredicted RBP10.59□□□□□ -0.71
USP1-201ENST00000339950 ADH6P28332 368 aa10.59□□□□□ -0.71
USP1-201ENST00000339950 RPS27AP62979 156 aaKnown RBP10.59□□□□□ -0.71
USP1-201ENST00000339950 UBA52P62987 128 aaKnown RBP10.59□□□□□ -0.71
USP1-201ENST00000339950 RAB32Q13637 225 aa10.59□□□□□ -0.71
USP1-201ENST00000339950 KCNRGQ8N5I3 272 aa10.59□□□□□ -0.71
USP1-201ENST00000339950 CLEC1AQ8NC01 280 aa10.59□□□□□ -0.71
USP1-201ENST00000339950 OR8B12Q8NGG6 310 aa10.59□□□□□ -0.71
USP1-201ENST00000339950 OR52H1Q8NGJ2 320 aa10.59□□□□□ -0.71
USP1-201ENST00000339950 PNPLA2Q96AD5 504 aa10.59□□□□□ -0.71
USP1-201ENST00000339950 SLC25A21Q9BQT8 299 aaPredicted RBP10.59□□□□□ -0.71
USP1-201ENST00000339950 OR10A2Q9H208 303 aa10.59□□□□□ -0.71
USP1-201ENST00000339950 COL4A3Q01955 1670 aa10.59□□□□□ -0.71
USP1-201ENST00000339950 A0A1W2PPC1 479 aa10.59□□□□□ -0.71
USP1-201ENST00000339950 NPIPB9F8W1W9 429 aa10.59□□□□□ -0.71
USP1-201ENST00000339950 MT-ATP6P00846 226 aa10.59□□□□□ -0.71
USP1-201ENST00000339950 FABP1P07148 127 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms