RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 LDLRAD4O15165 306 aa12.85□□□□□ -0.35
CCDC88C-202ENST00000334448 HPGDSO60760 199 aa12.85□□□□□ -0.35
CCDC88C-202ENST00000334448 TPPPO94811 219 aa12.85□□□□□ -0.35
CCDC88C-202ENST00000334448 AGFG2O95081 481 aa12.85□□□□□ -0.35
CCDC88C-202ENST00000334448 PAHP00439 452 aa12.85□□□□□ -0.35
CCDC88C-202ENST00000334448 PRKACBP22694 351 aa12.85□□□□□ -0.35
CCDC88C-202ENST00000334448 HTR2CP28335 458 aa12.85□□□□□ -0.35
CCDC88C-202ENST00000334448 ALDH3B1P43353 468 aa12.85□□□□□ -0.35
CCDC88C-202ENST00000334448 EVX1P49640 407 aa12.85□□□□□ -0.35
CCDC88C-202ENST00000334448 PPP5CP53041 499 aa12.85□□□□□ -0.35
CCDC88C-202ENST00000334448 UCP2P55851 309 aa12.85□□□□□ -0.35
CCDC88C-202ENST00000334448 ADORA2A-AS1P86434 159 aa12.85□□□□□ -0.35
CCDC88C-202ENST00000334448 NAAAQ02083 359 aa12.85□□□□□ -0.35
CCDC88C-202ENST00000334448 DCTN2Q13561 401 aaKnown RBP12.85□□□□□ -0.35
CCDC88C-202ENST00000334448 CNN3Q15417 329 aaKnown RBP12.85□□□□□ -0.35
CCDC88C-202ENST00000334448 UBE2V2Q15819 145 aa12.85□□□□□ -0.35
CCDC88C-202ENST00000334448 HES5Q5TA89 166 aa12.85□□□□□ -0.35
CCDC88C-202ENST00000334448 FTMTQ8N4E7 242 aa12.85□□□□□ -0.35
CCDC88C-202ENST00000334448 LILRB4Q8NHJ6 448 aa12.85□□□□□ -0.35
CCDC88C-202ENST00000334448 ZNF671Q8TAW3 534 aa12.85□□□□□ -0.35
CCDC88C-202ENST00000334448 PTX4Q96A99 478 aa12.85□□□□□ -0.35
CCDC88C-202ENST00000334448 CPNE2Q96FN4 548 aaPredicted RBP12.85□□□□□ -0.35
CCDC88C-202ENST00000334448 CEP19Q96LK0 163 aa12.85□□□□□ -0.35
CCDC88C-202ENST00000334448 SORCS2Q96PQ0 1159 aa12.85□□□□□ -0.35
CCDC88C-202ENST00000334448 BCL2L14Q9BZR8 327 aa12.85□□□□□ -0.35
CCDC88C-202ENST00000334448 ABCG5Q9H222 651 aa12.85□□□□□ -0.35
CCDC88C-202ENST00000334448 POFUT1Q9H488 388 aa12.85□□□□□ -0.35
CCDC88C-202ENST00000334448 PLGRKTQ9HBL7 147 aa12.85□□□□□ -0.35
CCDC88C-202ENST00000334448 COQ3Q9NZJ6 369 aa12.85□□□□□ -0.35
CCDC88C-202ENST00000334448 NPAP1Q9NZP6 1156 aa12.85□□□□□ -0.35
CCDC88C-202ENST00000334448 RABL2AQ9UBK7 228 aaPredicted RBP12.85□□□□□ -0.35
CCDC88C-202ENST00000334448 OR5V1Q9UGF6 321 aa12.85□□□□□ -0.35
CCDC88C-202ENST00000334448 KCNN3Q9UGI6 736 aa12.85□□□□□ -0.35
CCDC88C-202ENST00000334448 RABL2BQ9UNT1 228 aa12.85□□□□□ -0.35
CCDC88C-202ENST00000334448 CFAP46Q8IYW2 2715 aa12.85□□□□□ -0.35
CCDC88C-202ENST00000334448 LOC100289279A0A1B0GTE1 492 aa12.84□□□□□ -0.35
CCDC88C-202ENST00000334448 CD300LBA8K4G0 201 aa12.84□□□□□ -0.35
CCDC88C-202ENST00000334448 GMDSO60547 372 aa12.84□□□□□ -0.35
CCDC88C-202ENST00000334448 SNRPBP14678 240 aaKnown RBP12.84□□□□□ -0.35
CCDC88C-202ENST00000334448 RAC2P15153 192 aa12.84□□□□□ -0.35
CCDC88C-202ENST00000334448 AZGP1P25311 298 aaKnown RBP12.84□□□□□ -0.35
CCDC88C-202ENST00000334448 PEX19P40855 299 aa12.84□□□□□ -0.35
CCDC88C-202ENST00000334448 RAD52P43351 418 aa12.84□□□□□ -0.35
CCDC88C-202ENST00000334448 PPP1CBP62140 327 aa12.84□□□□□ -0.35
CCDC88C-202ENST00000334448 SORDQ00796 357 aa12.84□□□□□ -0.35
CCDC88C-202ENST00000334448 UBE2NLQ5JXB2 153 aa12.84□□□□□ -0.35
CCDC88C-202ENST00000334448 CRIP3Q6Q6R5 217 aa12.84□□□□□ -0.35
CCDC88C-202ENST00000334448 SAMD12Q8N8I0 201 aa12.84□□□□□ -0.35
CCDC88C-202ENST00000334448 OR56B2PQ8NGI1 322 aa12.84□□□□□ -0.35
CCDC88C-202ENST00000334448 OR52N4Q8NGI2 321 aa12.84□□□□□ -0.35
CCDC88C-202ENST00000334448 OR5H6Q8NGV6 325 aa12.84□□□□□ -0.35
CCDC88C-202ENST00000334448 RNASE6Q93091 150 aaKnown RBP12.84□□□□□ -0.35
CCDC88C-202ENST00000334448 SLC25A38Q96DW6 304 aa12.84□□□□□ -0.35
CCDC88C-202ENST00000334448 PTTG3PQ9NZH4 202 aa12.84□□□□□ -0.35
CCDC88C-202ENST00000334448 EPG5Q9HCE0 2579 aa12.83□□□□□ -0.35
CCDC88C-202ENST00000334448 BPNT1O95861 308 aa12.83□□□□□ -0.36
CCDC88C-202ENST00000334448 UBBP0CG47 229 aa12.83□□□□□ -0.36
CCDC88C-202ENST00000334448 SELEP16581 610 aa12.83□□□□□ -0.36
CCDC88C-202ENST00000334448 ELK1P19419 428 aa12.83□□□□□ -0.36
CCDC88C-202ENST00000334448 AGAP20933 346 aa12.83□□□□□ -0.36
CCDC88C-202ENST00000334448 ZNF93P35789 620 aaPredicted RBP12.83□□□□□ -0.36
CCDC88C-202ENST00000334448 MNDAP41218 407 aa12.83□□□□□ -0.36
CCDC88C-202ENST00000334448 C4orf17Q53FE4 359 aa12.83□□□□□ -0.36
CCDC88C-202ENST00000334448 CNIH2Q6PI25 160 aa12.83□□□□□ -0.36
CCDC88C-202ENST00000334448 BAIAP2L2Q6UXY1 529 aa12.83□□□□□ -0.36
CCDC88C-202ENST00000334448 JAGN1Q8N5M9 183 aa12.83□□□□□ -0.36
CCDC88C-202ENST00000334448 RAB40AQ8WXH6 277 aa12.83□□□□□ -0.36
CCDC88C-202ENST00000334448 FAM3DQ96BQ1 224 aa12.83□□□□□ -0.36
CCDC88C-202ENST00000334448 MARS2Q96GW9 593 aaKnown RBP12.83□□□□□ -0.36
CCDC88C-202ENST00000334448 CCDC120Q96HB5 630 aa12.83□□□□□ -0.36
CCDC88C-202ENST00000334448 DIRAS2Q96HU8 199 aa12.83□□□□□ -0.36
CCDC88C-202ENST00000334448 CNTD2Q9H8S5 307 aa12.83□□□□□ -0.36
CCDC88C-202ENST00000334448 MRPL15Q9P015 296 aaKnown RBP12.83□□□□□ -0.36
CCDC88C-202ENST00000334448 GHRLQ9UBU3 117 aa12.83□□□□□ -0.36
CCDC88C-202ENST00000334448 CGGBP1Q9UFW8 167 aaPredicted RBP12.83□□□□□ -0.36
CCDC88C-202ENST00000334448 MPC1Q9Y5U8 109 aa12.83□□□□□ -0.36
CCDC88C-202ENST00000334448 COL6A6A6NMZ7 2263 aa12.83□□□□□ -0.36
CCDC88C-202ENST00000334448 A0A0B4J203 849 aa12.82□□□□□ -0.36
CCDC88C-202ENST00000334448 A0A1B0GWJ7 208 aa12.82□□□□□ -0.36
CCDC88C-202ENST00000334448 GGT3PA6NGU5 568 aa12.82□□□□□ -0.36
CCDC88C-202ENST00000334448 A6NIN4 97 aa12.82□□□□□ -0.36
CCDC88C-202ENST00000334448 IQCF6A8MYZ5 107 aa12.82□□□□□ -0.36
CCDC88C-202ENST00000334448 MAGEB3O15480 346 aa12.82□□□□□ -0.36
CCDC88C-202ENST00000334448 NRASP01111 189 aa12.82□□□□□ -0.36
CCDC88C-202ENST00000334448 EIF4EP06730 217 aaKnown RBP12.82□□□□□ -0.36
CCDC88C-202ENST00000334448 NAT2P11245 290 aa12.82□□□□□ -0.36
CCDC88C-202ENST00000334448 RAB6AP20340 208 aa12.82□□□□□ -0.36
CCDC88C-202ENST00000334448 CALCRP30988 508 aa12.82□□□□□ -0.36
CCDC88C-202ENST00000334448 NR4A2P43354 598 aa12.82□□□□□ -0.36
CCDC88C-202ENST00000334448 NKX6-1P78426 367 aaPredicted RBP12.82□□□□□ -0.36
CCDC88C-202ENST00000334448 QRFPP83859 136 aa12.82□□□□□ -0.36
CCDC88C-202ENST00000334448 KISS1Q15726 138 aa12.82□□□□□ -0.36
CCDC88C-202ENST00000334448 ZNF79Q15937 498 aa12.82□□□□□ -0.36
CCDC88C-202ENST00000334448 MBNL2Q5VZF2 373 aaKnown RBP12.82□□□□□ -0.36
CCDC88C-202ENST00000334448 LHFPL2Q6ZUX7 228 aa12.82□□□□□ -0.36
CCDC88C-202ENST00000334448 OR2W3Q7Z3T1 314 aa12.82□□□□□ -0.36
CCDC88C-202ENST00000334448 OR4D6Q8NGJ1 314 aa12.82□□□□□ -0.36
CCDC88C-202ENST00000334448 HAVCR1Q96D42 359 aa12.82□□□□□ -0.36
CCDC88C-202ENST00000334448 C1orf147Q96MC9 270 aaPredicted RBP12.82□□□□□ -0.36
CCDC88C-202ENST00000334448 CCDC32Q9BV29 185 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms