RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 MPV17LQ2QL34 196 aa12.1□□□□□ -0.47
LDLR-201ENST00000252444 LAX1Q8IWV1 398 aa12.1□□□□□ -0.47
LDLR-201ENST00000252444 GPX8Q8TED1 209 aa12.1□□□□□ -0.47
LDLR-201ENST00000252444 ZCCHC14Q8WYQ9 949 aaKnown RBP12.1□□□□□ -0.47
LDLR-201ENST00000252444 SGK3Q96BR1 496 aa12.1□□□□□ -0.47
LDLR-201ENST00000252444 LOC101059948A0A1B0GTJ6 334 aa12.1□□□□□ -0.47
LDLR-201ENST00000252444 KNG1P01042 644 aa12.1□□□□□ -0.47
LDLR-201ENST00000252444 SLC26A10Q8NG04 563 aa12.1□□□□□ -0.47
LDLR-201ENST00000252444 OR4A16Q8NH70 328 aa12.1□□□□□ -0.47
LDLR-201ENST00000252444 DERL3Q96Q80 235 aa12.1□□□□□ -0.47
LDLR-201ENST00000252444 HLA-AP01891 365 aaKnown RBP12.1□□□□□ -0.47
LDLR-201ENST00000252444 LIMS3P0CW19 117 aa12.1□□□□□ -0.47
LDLR-201ENST00000252444 LIMS4P0CW20 117 aa12.1□□□□□ -0.47
LDLR-201ENST00000252444 CTLA4P16410 223 aa12.1□□□□□ -0.47
LDLR-201ENST00000252444 FABP6P51161 128 aa12.1□□□□□ -0.47
LDLR-201ENST00000252444 FUT5Q11128 374 aa12.1□□□□□ -0.47
LDLR-201ENST00000252444 ZNF770Q6IQ21 691 aaPredicted RBP12.1□□□□□ -0.47
LDLR-201ENST00000252444 SLC25A47Q6Q0C1 308 aa12.1□□□□□ -0.47
LDLR-201ENST00000252444 LYPD4Q6UWN0 246 aa12.1□□□□□ -0.47
LDLR-201ENST00000252444 BTLAQ7Z6A9 289 aa12.1□□□□□ -0.47
LDLR-201ENST00000252444 CD163Q86VB7 1156 aa12.1□□□□□ -0.47
LDLR-201ENST00000252444 NFAM1Q8NET5 270 aaPredicted RBP12.1□□□□□ -0.47
LDLR-201ENST00000252444 OR5A2Q8NGI9 324 aa12.1□□□□□ -0.47
LDLR-201ENST00000252444 OR8D4Q8NGM9 314 aa12.1□□□□□ -0.47
LDLR-201ENST00000252444 CIB3Q96Q77 187 aaPredicted RBP12.1□□□□□ -0.47
LDLR-201ENST00000252444 PRELID1Q9Y255 219 aa12.1□□□□□ -0.47
LDLR-201ENST00000252444 NEUROG3Q9Y4Z2 214 aa12.1□□□□□ -0.47
LDLR-201ENST00000252444 TRAV38-1A0A0B4J264 116 aa12.09□□□□□ -0.47
LDLR-201ENST00000252444 HRKO00198 91 aa12.09□□□□□ -0.47
LDLR-201ENST00000252444 CDC42EP2O14613 210 aa12.09□□□□□ -0.47
LDLR-201ENST00000252444 HFEQ30201 348 aa12.09□□□□□ -0.47
LDLR-201ENST00000252444 FAM76BQ5HYJ3 339 aa12.09□□□□□ -0.47
LDLR-201ENST00000252444 FJX1Q86VR8 437 aa12.09□□□□□ -0.47
LDLR-201ENST00000252444 BEST4Q8NFU0 473 aa12.09□□□□□ -0.47
LDLR-201ENST00000252444 ADTRPQ96IZ2 230 aa12.09□□□□□ -0.47
LDLR-201ENST00000252444 SULT4A1Q9BR01 284 aa12.09□□□□□ -0.47
LDLR-201ENST00000252444 CHD5Q8TDI0 1954 aa12.09□□□□□ -0.47
LDLR-201ENST00000252444 CTDSP2O14595 271 aa12.09□□□□□ -0.47
LDLR-201ENST00000252444 DFFBO76075 338 aa12.09□□□□□ -0.47
LDLR-201ENST00000252444 IGHV3-9P01782 118 aa12.09□□□□□ -0.47
LDLR-201ENST00000252444 MGMTP16455 207 aa12.09□□□□□ -0.47
LDLR-201ENST00000252444 HLA-DMAP28067 261 aa12.09□□□□□ -0.47
LDLR-201ENST00000252444 ROM1Q03395 351 aa12.09□□□□□ -0.47
LDLR-201ENST00000252444 PRDX4Q13162 271 aa12.09□□□□□ -0.47
LDLR-201ENST00000252444 C2orf76Q3KRA6 126 aa12.09□□□□□ -0.47
LDLR-201ENST00000252444 AKR1C8PQ5T2L2 129 aa12.09□□□□□ -0.47
LDLR-201ENST00000252444 CORO6Q6QEF8 472 aa12.09□□□□□ -0.47
LDLR-201ENST00000252444 MUC20Q8N307 709 aaPredicted RBP12.09□□□□□ -0.47
LDLR-201ENST00000252444 ZDHHC22Q8N966 263 aa12.09□□□□□ -0.47
LDLR-201ENST00000252444 OR4D11Q8NGI4 311 aa12.09□□□□□ -0.47
LDLR-201ENST00000252444 SMIM4Q8WVI0 70 aa12.09□□□□□ -0.47
LDLR-201ENST00000252444 DTX4Q9Y2E6 619 aa12.09□□□□□ -0.47
LDLR-201ENST00000252444 GMDSO60547 372 aa12.09□□□□□ -0.47
LDLR-201ENST00000252444 EPHA1P21709 976 aa12.09□□□□□ -0.47
LDLR-201ENST00000252444 GIFP27352 417 aa12.09□□□□□ -0.47
LDLR-201ENST00000252444 DGAT2L6Q6ZPD8 337 aa12.09□□□□□ -0.47
LDLR-201ENST00000252444 FBLIM1Q8WUP2 373 aa12.09□□□□□ -0.47
LDLR-201ENST00000252444 RPL3LQ92901 407 aaKnown RBP12.09□□□□□ -0.47
LDLR-201ENST00000252444 ERGIC1Q969X5 290 aa12.09□□□□□ -0.47
LDLR-201ENST00000252444 FOXJ2Q9P0K8 574 aa12.09□□□□□ -0.47
LDLR-201ENST00000252444 DLL1O00548 723 aa12.09□□□□□ -0.47
LDLR-201ENST00000252444 RFC3P40938 356 aa12.09□□□□□ -0.47
LDLR-201ENST00000252444 AKR7LQ8NHP1 331 aa12.09□□□□□ -0.47
LDLR-201ENST00000252444 TMEM54Q969K7 222 aa12.09□□□□□ -0.47
LDLR-201ENST00000252444 C4orf51C9J302 202 aa12.08□□□□□ -0.47
LDLR-201ENST00000252444 B3GLCTQ6Y288 498 aa12.08□□□□□ -0.47
LDLR-201ENST00000252444 THSD4Q6ZMP0 1018 aa12.08□□□□□ -0.47
LDLR-201ENST00000252444 TUSC5Q8IXB3 177 aa12.08□□□□□ -0.47
LDLR-201ENST00000252444 IL1F10Q8WWZ1 152 aa12.08□□□□□ -0.47
LDLR-201ENST00000252444 OR6C3Q9NZP0 311 aa12.08□□□□□ -0.47
LDLR-201ENST00000252444 CDX4O14627 284 aaPredicted RBP12.08□□□□□ -0.48
LDLR-201ENST00000252444 CBR1P16152 277 aa12.08□□□□□ -0.48
LDLR-201ENST00000252444 SURF2Q15527 256 aaPredicted RBP12.08□□□□□ -0.48
LDLR-201ENST00000252444 MICBQ29980 383 aa12.08□□□□□ -0.48
LDLR-201ENST00000252444 TMEM185AQ8NFB2 350 aa12.08□□□□□ -0.48
LDLR-201ENST00000252444 MEIOCA2RUB1 952 aa12.08□□□□□ -0.48
LDLR-201ENST00000252444 TCRBP04435 133 aa12.08□□□□□ -0.48
LDLR-201ENST00000252444 APH1BQ8WW43 257 aa12.08□□□□□ -0.48
LDLR-201ENST00000252444 DMRTB1Q96MA1 342 aa12.08□□□□□ -0.48
LDLR-201ENST00000252444 POM121CA8CG34 1229 aa12.08□□□□□ -0.48
LDLR-201ENST00000252444 TAAR5O14804 337 aa12.08□□□□□ -0.48
LDLR-201ENST00000252444 NCR1O76036 304 aa12.08□□□□□ -0.48
LDLR-201ENST00000252444 ELK1P19419 428 aa12.08□□□□□ -0.48
LDLR-201ENST00000252444 HAAOP46952 286 aa12.08□□□□□ -0.48
LDLR-201ENST00000252444 ZNF85Q03923 595 aa12.08□□□□□ -0.48
LDLR-201ENST00000252444 OR52W1Q6IF63 320 aa12.08□□□□□ -0.48
LDLR-201ENST00000252444 APCDD1LQ8NCL9 501 aa12.08□□□□□ -0.48
LDLR-201ENST00000252444 ZC3H12DA2A288 527 aaKnown RBP12.07□□□□□ -0.48
LDLR-201ENST00000252444 THBS3P49746 956 aa12.07□□□□□ -0.48
LDLR-201ENST00000252444 ZNF81P51508 661 aa12.07□□□□□ -0.48
LDLR-201ENST00000252444 ZXDCQ2QGD7 858 aaPredicted RBP12.07□□□□□ -0.48
LDLR-201ENST00000252444 ZNF574Q6ZN55 896 aaPredicted RBP12.07□□□□□ -0.48
LDLR-201ENST00000252444 SAXO1Q8IYX7 474 aa12.07□□□□□ -0.48
LDLR-201ENST00000252444 KCNK17Q96T54 332 aa12.07□□□□□ -0.48
LDLR-201ENST00000252444 SUCNR1Q9BXA5 334 aa12.07□□□□□ -0.48
LDLR-201ENST00000252444 FLVCR1Q9Y5Y0 555 aa12.07□□□□□ -0.48
LDLR-201ENST00000252444 J3QT63 122 aa12.07□□□□□ -0.48
LDLR-201ENST00000252444 MT-ND4P03905 459 aa12.07□□□□□ -0.48
LDLR-201ENST00000252444 ZNF774Q6NX45 483 aa12.07□□□□□ -0.48
LDLR-201ENST00000252444 ZAR1Q86SH2 424 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms