RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 PGA3P0DJD8 388 aa9.4□□□□□ -0.9
USP28-201ENST00000003302 BLKP51451 505 aa9.4□□□□□ -0.9
USP28-201ENST00000003302 SNAI3Q3KNW1 292 aa9.4□□□□□ -0.9
USP28-201ENST00000003302 CLRN3Q8NCR9 226 aa9.4□□□□□ -0.9
USP28-201ENST00000003302 DAZLQ92904 295 aaKnown RBP9.4□□□□□ -0.9
USP28-201ENST00000003302 CHST11Q9NPF2 352 aa9.4□□□□□ -0.9
USP28-201ENST00000003302 MRPS28Q9Y2Q9 187 aaKnown RBP9.4□□□□□ -0.9
USP28-201ENST00000003302 MEX3AA1L020 520 aaKnown RBP9.4□□□□□ -0.91
USP28-201ENST00000003302 F10P00742 488 aa9.4□□□□□ -0.91
USP28-201ENST00000003302 PSMB6P28072 239 aa9.4□□□□□ -0.91
USP28-201ENST00000003302 OPRM1P35372 400 aa9.4□□□□□ -0.91
USP28-201ENST00000003302 PTGER4P35408 488 aa9.4□□□□□ -0.91
USP28-201ENST00000003302 CDCA3Q99618 268 aaPredicted RBP9.4□□□□□ -0.91
USP28-201ENST00000003302 A0A1W2PQD3 144 aa9.39□□□□□ -0.91
USP28-201ENST00000003302 TUBAL3A6NHL2 446 aa9.39□□□□□ -0.91
USP28-201ENST00000003302 ZNF705EA8MWA4 302 aaPredicted RBP9.39□□□□□ -0.91
USP28-201ENST00000003302 DISC1C4P0D8 188 aa9.39□□□□□ -0.91
USP28-201ENST00000003302 IGHMP01871 453 aa9.39□□□□□ -0.91
USP28-201ENST00000003302 QDPRP09417 244 aa9.39□□□□□ -0.91
USP28-201ENST00000003302 CBR1P16152 277 aa9.39□□□□□ -0.91
USP28-201ENST00000003302 NME2P22392 152 aa9.39□□□□□ -0.91
USP28-201ENST00000003302 ARL4DP49703 201 aa9.39□□□□□ -0.91
USP28-201ENST00000003302 AKR1D1P51857 326 aa9.39□□□□□ -0.91
USP28-201ENST00000003302 PLPPR5Q32ZL2 321 aa9.39□□□□□ -0.91
USP28-201ENST00000003302 TMEM176BQ3YBM2 270 aaPredicted RBP9.39□□□□□ -0.91
USP28-201ENST00000003302 NKAPLQ5M9Q1 402 aa9.39□□□□□ -0.91
USP28-201ENST00000003302 SLC23A3Q6PIS1 610 aa9.39□□□□□ -0.91
USP28-201ENST00000003302 FOXRED1Q96CU9 486 aaPredicted RBP9.39□□□□□ -0.91
USP28-201ENST00000003302 TSNAXQ99598 290 aaKnown RBP9.39□□□□□ -0.91
USP28-201ENST00000003302 SLC25A32Q9H2D1 315 aa9.39□□□□□ -0.91
USP28-201ENST00000003302 SESN1Q9Y6P5 492 aa9.39□□□□□ -0.91
USP28-201ENST00000003302 A0A1B0GX78 115 aa9.39□□□□□ -0.91
USP28-201ENST00000003302 A0A1W2PQM1 296 aa9.39□□□□□ -0.91
USP28-201ENST00000003302 STMND1H3BQB6 276 aa9.39□□□□□ -0.91
USP28-201ENST00000003302 LRP3O75074 770 aa9.39□□□□□ -0.91
USP28-201ENST00000003302 HPNP05981 417 aa9.39□□□□□ -0.91
USP28-201ENST00000003302 ACKR3P25106 362 aa9.39□□□□□ -0.91
USP28-201ENST00000003302 CRABP1P29762 137 aa9.39□□□□□ -0.91
USP28-201ENST00000003302 PABPC1L2AQ5JQF8 200 aa9.39□□□□□ -0.91
USP28-201ENST00000003302 CLVS2Q5SYC1 327 aa9.39□□□□□ -0.91
USP28-201ENST00000003302 GUSBP11Q6P575 273 aa9.39□□□□□ -0.91
USP28-201ENST00000003302 OR6C1Q96RD1 312 aa9.39□□□□□ -0.91
USP28-201ENST00000003302 GPR132Q9UNW8 380 aa9.39□□□□□ -0.91
USP28-201ENST00000003302 POLR1DQ9Y2S0 133 aa9.39□□□□□ -0.91
USP28-201ENST00000003302 NDUFA2O43678 99 aa9.39□□□□□ -0.91
USP28-201ENST00000003302 HCKP08631 526 aa9.39□□□□□ -0.91
USP28-201ENST00000003302 IGFBP4P22692 258 aa9.39□□□□□ -0.91
USP28-201ENST00000003302 SCAND1P57086 179 aa9.39□□□□□ -0.91
USP28-201ENST00000003302 ANKRD37Q7Z713 158 aa9.39□□□□□ -0.91
USP28-201ENST00000003302 D2HGDHQ8N465 521 aa9.39□□□□□ -0.91
USP28-201ENST00000003302 ERGIC1Q969X5 290 aa9.39□□□□□ -0.91
USP28-201ENST00000003302 RAB3CQ96E17 227 aa9.39□□□□□ -0.91
USP28-201ENST00000003302 SLC17A5Q9NRA2 495 aa9.39□□□□□ -0.91
USP28-201ENST00000003302 HPF1Q9NWY4 346 aa9.39□□□□□ -0.91
USP28-201ENST00000003302 RAB22AQ9UL26 194 aa9.39□□□□□ -0.91
USP28-201ENST00000003302 TNFSF12-TNFSF13A0A0A6YY99 330 aa9.38□□□□□ -0.91
USP28-201ENST00000003302 A0A1W2PPE3 182 aa9.38□□□□□ -0.91
USP28-201ENST00000003302 SPRY1O43609 319 aaPredicted RBP9.38□□□□□ -0.91
USP28-201ENST00000003302 DUS4LO95620 317 aaKnown RBP9.38□□□□□ -0.91
USP28-201ENST00000003302 SRSF4Q08170 494 aaKnown RBP9.38□□□□□ -0.91
USP28-201ENST00000003302 SHBQ15464 509 aa9.38□□□□□ -0.91
USP28-201ENST00000003302 H3F3CQ6NXT2 135 aa9.38□□□□□ -0.91
USP28-201ENST00000003302 LINC00518Q8N0U6 118 aa9.38□□□□□ -0.91
USP28-201ENST00000003302 PHB2Q99623 299 aa9.38□□□□□ -0.91
USP28-201ENST00000003302 SLC2A8Q9NY64 477 aa9.38□□□□□ -0.91
USP28-201ENST00000003302 R4GN57 208 aa9.38□□□□□ -0.91
USP28-201ENST00000003302 DOCK11Q5JSL3 2073 aa9.38□□□□□ -0.91
USP28-201ENST00000003302 CEP250Q9BV73 2442 aa9.38□□□□□ -0.91
USP28-201ENST00000003302 PHYHO14832 338 aa9.38□□□□□ -0.91
USP28-201ENST00000003302 UBBP0CG47 229 aa9.38□□□□□ -0.91
USP28-201ENST00000003302 UBCP0CG48 685 aaKnown RBP9.38□□□□□ -0.91
USP28-201ENST00000003302 SLC25A4P12235 298 aa9.38□□□□□ -0.91
USP28-201ENST00000003302 S100A10P60903 97 aa9.38□□□□□ -0.91
USP28-201ENST00000003302 RPS27AP62979 156 aaKnown RBP9.38□□□□□ -0.91
USP28-201ENST00000003302 UBA52P62987 128 aaKnown RBP9.38□□□□□ -0.91
USP28-201ENST00000003302 SLC22A24Q8N4F4 322 aa9.38□□□□□ -0.91
USP28-201ENST00000003302 TERB2Q8NHR7 220 aa9.38□□□□□ -0.91
USP28-201ENST00000003302 CCDC107Q8WV48 283 aa9.38□□□□□ -0.91
USP28-201ENST00000003302 ISOC2Q96AB3 205 aa9.38□□□□□ -0.91
USP28-201ENST00000003302 C20orf24Q9BUV8 137 aa9.38□□□□□ -0.91
USP28-201ENST00000003302 COMMD9Q9P000 198 aa9.38□□□□□ -0.91
USP28-201ENST00000003302 MMACHCQ9Y4U1 282 aa9.38□□□□□ -0.91
USP28-201ENST00000003302 ICE1Q9Y2F5 2266 aa9.38□□□□□ -0.91
USP28-201ENST00000003302 GVINP1Q7Z2Y8 2422 aa9.38□□□□□ -0.91
USP28-201ENST00000003302 IGKV1-27A0A075B6S5 117 aa9.38□□□□□ -0.91
USP28-201ENST00000003302 MFNGO00587 321 aa9.38□□□□□ -0.91
USP28-201ENST00000003302 SFTPBP07988 381 aa9.38□□□□□ -0.91
USP28-201ENST00000003302 OR8U9P0C7N5 309 aa9.38□□□□□ -0.91
USP28-201ENST00000003302 HIST1H1DP16402 221 aaKnown RBP9.38□□□□□ -0.91
USP28-201ENST00000003302 CX3CR1P49238 355 aa9.38□□□□□ -0.91
USP28-201ENST00000003302 OR8U1Q8NH10 309 aa9.38□□□□□ -0.91
USP28-201ENST00000003302 ZDHHC12Q96GR4 267 aa9.38□□□□□ -0.91
USP28-201ENST00000003302 PURGQ9UJV8 347 aaKnown RBP9.38□□□□□ -0.91
USP28-201ENST00000003302 DCHS2Q6V1P9 2916 aa9.38□□□□□ -0.91
USP28-201ENST00000003302 SPP1P10451 314 aa9.38□□□□□ -0.91
USP28-201ENST00000003302 ZNF585AQ6P3V2 769 aa9.38□□□□□ -0.91
USP28-201ENST00000003302 GKN2Q86XP6 184 aa9.38□□□□□ -0.91
USP28-201ENST00000003302 IQCF2Q8IXL9 164 aa9.38□□□□□ -0.91
USP28-201ENST00000003302 CCDC85CA6NKD9 419 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 XRCC2O43543 280 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms