RNA–Protein interactions for RNA: YJR044C

VPS55, Transcript of Late endosomal protein involved in late endosome to vacuole transport, yeast

Gene VPS55, Length 423 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS55	YJR044C	YHR097C	P38809	366 aa	Known RBP	2.24	□□□□□ -2.05
VPS55	YJR044C	CRP1	P38845	465 aa	Known RBP	2.24	□□□□□ -2.05
VPS55	YJR044C	TY4A-J	P47023	414 aa		2.24	□□□□□ -2.05
VPS55	YJR044C	YPL068C	Q02749	293 aa		2.24	□□□□□ -2.05
VPS55	YJR044C	RNR1	P21524	888 aa	Known RBP	2.23	□□□□□ -2.05
VPS55	YJR044C	HOT13	P36078	116 aa		2.23	□□□□□ -2.05
VPS55	YJR044C	ALG2	P43636	503 aa		2.23	□□□□□ -2.05
VPS55	YJR044C	ALY2	P47029	1046 aa		2.23	□□□□□ -2.05
VPS55	YJR044C	ZDS1	P50111	915 aa	Known RBP	2.23	□□□□□ -2.05
VPS55	YJR044C	NMA2	P53204	395 aa		2.23	□□□□□ -2.05
VPS55	YJR044C	GIS2	P53849	153 aa	Known RBP RIP-Chip data	2.23	□□□□□ -2.05	not detected
VPS55	YJR044C	SPO75	Q07798	868 aa		2.23	□□□□□ -2.05
VPS55	YJR044C	ULA1	Q12059	462 aa		2.23	□□□□□ -2.05
VPS55	YJR044C	SSF2	Q12153	453 aa	Predicted RBP	2.23	□□□□□ -2.05
VPS55	YJR044C	Q0142	Q9ZZW4	58 aa		2.23	□□□□□ -2.05
VPS55	YJR044C	LAM4	P38800	1345 aa		2.22	□□□□□ -2.05
VPS55	YJR044C	APT2	P36973	181 aa		2.22	□□□□□ -2.05
VPS55	YJR044C	CCT5	P40413	562 aa	Known RBP	2.22	□□□□□ -2.05
VPS55	YJR044C	ULP2	P40537	1034 aa	Predicted RBP	2.22	□□□□□ -2.05
VPS55	YJR044C	MCM21	Q06675	368 aa		2.22	□□□□□ -2.05
VPS55	YJR044C	ECM3	Q99252	613 aa		2.22	□□□□□ -2.05
VPS55	YJR044C	BET3	P36149	193 aa		2.21	□□□□□ -2.06
VPS55	YJR044C	YNL195C	P40168	261 aa		2.21	□□□□□ -2.06
VPS55	YJR044C	PSA1	P41940	361 aa	Known RBP	2.21	□□□□□ -2.06
VPS55	YJR044C	SNU71	P53207	620 aa	Known RBP	2.21	□□□□□ -2.06
VPS55	YJR044C	COX18	P53239	316 aa		2.21	□□□□□ -2.06
VPS55	YJR044C	ORC4	P54791	529 aa		2.21	□□□□□ -2.06
VPS55	YJR044C	NAN1	Q02931	896 aa	Known RBP	2.21	□□□□□ -2.06
VPS55	YJR044C	ATP25	Q03153	612 aa		2.21	□□□□□ -2.06
VPS55	YJR044C	YDL124W	Q07551	312 aa	Known RBP	2.21	□□□□□ -2.06
VPS55	YJR044C	OSH2	Q12451	1283 aa		2.21	□□□□□ -2.06
VPS55	YJR044C	CIT1	P00890	479 aa		2.2	□□□□□ -2.06
VPS55	YJR044C	RAD4	P14736	754 aa		2.2	□□□□□ -2.06
VPS55	YJR044C	HSP60	P19882	572 aa	Known RBP	2.2	□□□□□ -2.06
VPS55	YJR044C	ECM32	P32644	1121 aa	Known RBP	2.2	□□□□□ -2.06
VPS55	YJR044C	BCS1	P32839	456 aa		2.2	□□□□□ -2.06
VPS55	YJR044C	PIP2	P52960	996 aa		2.2	□□□□□ -2.06
VPS55	YJR044C	TAF8	Q03750	510 aa		2.2	□□□□□ -2.06
VPS55	YJR044C	HMO1	Q03973	246 aa	Known RBP	2.2	□□□□□ -2.06
VPS55	YJR044C	YDL086W	Q07505	273 aa		2.2	□□□□□ -2.06
VPS55	YJR044C	FRE7	Q12333	620 aa		2.2	□□□□□ -2.06
VPS55	YJR044C	MDM20	Q12387	796 aa	Known RBP	2.2	□□□□□ -2.06
VPS55	YJR044C	AI5_ALPHA	Q9ZZX1	630 aa		2.2	□□□□□ -2.06
VPS55	YJR044C	TPK2	P06245	380 aa		2.19	□□□□□ -2.06
VPS55	YJR044C	RAD18	P10862	487 aa		2.19	□□□□□ -2.06
VPS55	YJR044C	PEX1	P24004	1043 aa		2.19	□□□□□ -2.06
VPS55	YJR044C	PAM1	P37304	830 aa	Known RBP	2.19	□□□□□ -2.06
VPS55	YJR044C	PMT6	P42934	759 aa		2.19	□□□□□ -2.06
VPS55	YJR044C	IRC8	P47046	822 aa		2.19	□□□□□ -2.06
VPS55	YJR044C	NOP9	P47077	666 aa	Known RBP	2.19	□□□□□ -2.06
VPS55	YJR044C	RTA1	P53047	317 aa		2.19	□□□□□ -2.06
VPS55	YJR044C	YGR125W	P53273	1036 aa		2.19	□□□□□ -2.06
VPS55	YJR044C	CLF1	Q12309	687 aa	Predicted RBP	2.19	□□□□□ -2.06
VPS55	YJR044C	ABF1	P14164	731 aa		2.18	□□□□□ -2.06
VPS55	YJR044C	SCT1	P32784	759 aa		2.18	□□□□□ -2.06
VPS55	YJR044C	BIT2	P38346	545 aa		2.18	□□□□□ -2.06
VPS55	YJR044C	YHR020W	P38708	688 aa	Known RBP	2.18	□□□□□ -2.06
VPS55	YJR044C	MIP6	P38760	659 aa	Known RBP	2.18	□□□□□ -2.06
VPS55	YJR044C	YFL052W	P43551	465 aa		2.18	□□□□□ -2.06
VPS55	YJR044C	MPS3	P47069	682 aa		2.18	□□□□□ -2.06
VPS55	YJR044C	ARG7	Q04728	441 aa		2.18	□□□□□ -2.06
VPS55	YJR044C	THI22	Q06490	572 aa		2.18	□□□□□ -2.06
VPS55	YJR044C	BMS1	Q08965	1183 aa	Known RBP	2.18	□□□□□ -2.06
VPS55	YJR044C	CHS5	Q12114	671 aa	Known RBP	2.18	□□□□□ -2.06
VPS55	YJR044C	NOP1	P15646	327 aa	Known RBP	2.17	□□□□□ -2.06
VPS55	YJR044C	AAD3	P25612	363 aa		2.17	□□□□□ -2.06
VPS55	YJR044C	PIG2	P40187	538 aa		2.17	□□□□□ -2.06
VPS55	YJR044C	HUL4	P40985	892 aa		2.17	□□□□□ -2.06
VPS55	YJR044C	TIM54	P47045	478 aa		2.17	□□□□□ -2.06
VPS55	YJR044C	BNA2	P47125	453 aa		2.17	□□□□□ -2.06
VPS55	YJR044C	RFX1	P48743	811 aa		2.17	□□□□□ -2.06
VPS55	YJR044C	REC102	Q02721	264 aa		2.17	□□□□□ -2.06
VPS55	YJR044C	YDR179W-A	Q03983	463 aa		2.17	□□□□□ -2.06
VPS55	YJR044C	WRS1	Q12109	432 aa	Known RBP	2.17	□□□□□ -2.06
VPS55	YJR044C	RKI1	Q12189	258 aa		2.17	□□□□□ -2.06
VPS55	YJR044C	YKR051W	P36142	418 aa		2.16	□□□□□ -2.06
VPS55	YJR044C	RSC8	P43609	557 aa	Known RBP	2.16	□□□□□ -2.06
VPS55	YJR044C	DIP5	P53388	608 aa		2.16	□□□□□ -2.06
VPS55	YJR044C	LEE1	Q02799	301 aa	Known RBP	2.16	□□□□□ -2.06
VPS55	YJR044C	PRP28	P23394	588 aa		2.15	□□□□□ -2.07
VPS55	YJR044C	FEN2	P25621	512 aa	Known RBP	2.15	□□□□□ -2.07
VPS55	YJR044C	BEM3	P32873	1128 aa		2.15	□□□□□ -2.07
VPS55	YJR044C	CTP1	P38152	299 aa		2.15	□□□□□ -2.07
VPS55	YJR044C	KHA1	P40309	873 aa		2.15	□□□□□ -2.07
VPS55	YJR044C	MAF1	P41910	395 aa		2.15	□□□□□ -2.07
VPS55	YJR044C	NPY1	P53164	384 aa		2.15	□□□□□ -2.07
VPS55	YJR044C	SNF12	P53628	566 aa		2.15	□□□□□ -2.07
VPS55	YJR044C	ORM2	Q06144	216 aa		2.15	□□□□□ -2.07
VPS55	YJR044C	PRS5	Q12265	496 aa	Known RBP	2.15	□□□□□ -2.07
VPS55	YJR044C	SEC6	P32844	805 aa		2.14	□□□□□ -2.07
VPS55	YJR044C	APL3	P38065	1025 aa		2.14	□□□□□ -2.07
VPS55	YJR044C	YIL077C	P40508	320 aa		2.14	□□□□□ -2.07
VPS55	YJR044C	ATP23	P53722	227 aa		2.14	□□□□□ -2.07
VPS55	YJR044C	ARP4	P80428	489 aa		2.14	□□□□□ -2.07
VPS55	YJR044C	YSH1	Q06224	779 aa	Predicted RBP	2.14	□□□□□ -2.07
VPS55	YJR044C	VPS36	Q06696	566 aa		2.14	□□□□□ -2.07
VPS55	YJR044C	DIA2	Q08496	732 aa	Predicted RBP	2.14	□□□□□ -2.07
VPS55	YJR044C	FLC1	Q08967	793 aa		2.14	□□□□□ -2.07
VPS55	YJR044C	LEU2	P04173	364 aa	Predicted RBP	2.13	□□□□□ -2.07
VPS55	YJR044C	CAN1	P04817	590 aa		2.13	□□□□□ -2.07

Retrieved 100 of 5,963 RNA–protein pairs in 15.7 ms