RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 FAM169AQ9Y6X4 670 aa6.96□□□□□ -1.3
SCN1A-217ENST00000637988 UHRF1BP1LA0JNW5 1464 aa6.96□□□□□ -1.3
SCN1A-217ENST00000637988 CTTNBP2Q8WZ74 1663 aa6.96□□□□□ -1.3
SCN1A-217ENST00000637988 CFTRP13569 1480 aa6.96□□□□□ -1.3
SCN1A-217ENST00000637988 MX1P20591 662 aa6.96□□□□□ -1.3
SCN1A-217ENST00000637988 PLCB4Q15147 1175 aa6.96□□□□□ -1.3
SCN1A-217ENST00000637988 KIF4BQ2VIQ3 1234 aa6.96□□□□□ -1.3
SCN1A-217ENST00000637988 SPECC1Q5M775 1068 aa6.96□□□□□ -1.3
SCN1A-217ENST00000637988 RNF187Q5TA31 235 aaPredicted RBP6.96□□□□□ -1.3
SCN1A-217ENST00000637988 DCAF15Q66K64 600 aa6.96□□□□□ -1.3
SCN1A-217ENST00000637988 ANKRD13DQ6ZTN6 518 aa6.96□□□□□ -1.3
SCN1A-217ENST00000637988 SELENOOQ9BVL4 669 aa6.96□□□□□ -1.3
SCN1A-217ENST00000637988 ANO10Q9NW15 660 aa6.96□□□□□ -1.3
SCN1A-217ENST00000637988 FRMD4BQ9Y2L6 1034 aa6.96□□□□□ -1.3
SCN1A-217ENST00000637988 MCM5P33992 734 aa6.96□□□□□ -1.3
SCN1A-217ENST00000637988 MAP3K11Q16584 847 aa6.96□□□□□ -1.3
SCN1A-217ENST00000637988 HS2ST1Q7LGA3 356 aa6.96□□□□□ -1.3
SCN1A-217ENST00000637988 KIFAP3Q92845 792 aa6.96□□□□□ -1.3
SCN1A-217ENST00000637988 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.96□□□□□ -1.3
SCN1A-217ENST00000637988 ZBTB21Q9ULJ3 1066 aa6.96□□□□□ -1.3
SCN1A-217ENST00000637988 TYW5A2RUC4 315 aaKnown RBP6.95□□□□□ -1.3
SCN1A-217ENST00000637988 CARD10Q9BWT7 1032 aa6.95□□□□□ -1.3
SCN1A-217ENST00000637988 GLT8D2Q9H1C3 349 aa6.95□□□□□ -1.3
SCN1A-217ENST00000637988 CGNQ9P2M7 1197 aaKnown RBP6.95□□□□□ -1.3
SCN1A-217ENST00000637988 ANAPC4Q9UJX5 808 aa6.95□□□□□ -1.3
SCN1A-217ENST00000637988 PTPN23Q9H3S7 1636 aa6.95□□□□□ -1.3
SCN1A-217ENST00000637988 GOLGA6L9A6NEM1 432 aa6.95□□□□□ -1.3
SCN1A-217ENST00000637988 USP48Q86UV5 1035 aa6.95□□□□□ -1.3
SCN1A-217ENST00000637988 CCDC144CPQ8IYA2 1237 aa6.95□□□□□ -1.3
SCN1A-217ENST00000637988 JAKMIP2Q96AA8 810 aa6.95□□□□□ -1.3
SCN1A-217ENST00000637988 FNBP1Q96RU3 617 aa6.95□□□□□ -1.3
SCN1A-217ENST00000637988 BCCIPQ9P287 314 aaKnown RBP eCLIP6.95□□□□□ -1.3
SCN1A-217ENST00000637988 GGA1Q9UJY5 639 aa6.95□□□□□ -1.3
SCN1A-217ENST00000637988 BCS1LQ9Y276 419 aa6.95□□□□□ -1.3
SCN1A-217ENST00000637988 EEF2P13639 858 aaKnown RBP6.95□□□□□ -1.3
SCN1A-217ENST00000637988 TRPC3Q13507 836 aa6.95□□□□□ -1.3
SCN1A-217ENST00000637988 NCAPGQ9BPX3 1015 aa6.95□□□□□ -1.3
SCN1A-217ENST00000637988 EHBP1Q8NDI1 1231 aa6.95□□□□□ -1.3
SCN1A-217ENST00000637988 RXRBP28702 533 aa6.95□□□□□ -1.3
SCN1A-217ENST00000637988 SP4Q02446 784 aa6.95□□□□□ -1.3
SCN1A-217ENST00000637988 CCDC63Q8NA47 563 aa6.95□□□□□ -1.3
SCN1A-217ENST00000637988 RPRD2Q5VT52 1461 aaKnown RBP6.95□□□□□ -1.3
SCN1A-217ENST00000637988 ABCC11Q96J66 1382 aa6.95□□□□□ -1.3
SCN1A-217ENST00000637988 CCDC155Q8N6L0 562 aa6.95□□□□□ -1.3
SCN1A-217ENST00000637988 CEP112Q8N8E3 955 aa6.95□□□□□ -1.3
SCN1A-217ENST00000637988 PFDN4Q9NQP4 134 aa6.95□□□□□ -1.3
SCN1A-217ENST00000637988 TOP1P11387 765 aaKnown RBP6.95□□□□□ -1.3
SCN1A-217ENST00000637988 P4HA1P13674 534 aa6.95□□□□□ -1.3
SCN1A-217ENST00000637988 DAAM2Q86T65 1068 aa6.95□□□□□ -1.3
SCN1A-217ENST00000637988 CCDC102AQ96A19 550 aa6.95□□□□□ -1.3
SCN1A-217ENST00000637988 SCAND2PQ9GZW5 306 aaPredicted RBP6.95□□□□□ -1.3
SCN1A-217ENST00000637988 RBM28Q9NW13 759 aaKnown RBP6.95□□□□□ -1.3
SCN1A-217ENST00000637988 KCNG1Q9UIX4 513 aa6.95□□□□□ -1.3
SCN1A-217ENST00000637988 KIF2AO00139 706 aaPredicted RBP6.94□□□□□ -1.3
SCN1A-217ENST00000637988 ABI1Q8IZP0 508 aa6.94□□□□□ -1.3
SCN1A-217ENST00000637988 HMG20BQ9P0W2 317 aa6.94□□□□□ -1.3
SCN1A-217ENST00000637988 PTPDC1A2A3K4 754 aa6.94□□□□□ -1.3
SCN1A-217ENST00000637988 GEN1Q17RS7 908 aa6.94□□□□□ -1.3
SCN1A-217ENST00000637988 BTG4Q9NY30 223 aa6.94□□□□□ -1.3
SCN1A-217ENST00000637988 GOLGA6CA6NDK9 693 aa6.94□□□□□ -1.3
SCN1A-217ENST00000637988 GOLGA6BA6NDN3 693 aa6.94□□□□□ -1.3
SCN1A-217ENST00000637988 K7ELQ4 463 aaPredicted RBP6.94□□□□□ -1.3
SCN1A-217ENST00000637988 GOLGA6DP0CG33 693 aa6.94□□□□□ -1.3
SCN1A-217ENST00000637988 C1orf228Q6PIY5 440 aa6.94□□□□□ -1.3
SCN1A-217ENST00000637988 CCDC50Q8IVM0 306 aa6.94□□□□□ -1.3
SCN1A-217ENST00000637988 SLC26A6Q9BXS9 759 aa6.94□□□□□ -1.3
SCN1A-217ENST00000637988 GOLGA6AQ9NYA3 693 aa6.94□□□□□ -1.3
SCN1A-217ENST00000637988 SHTN1A0MZ66 631 aa6.94□□□□□ -1.3
SCN1A-217ENST00000637988 KCNA4P22459 653 aa6.94□□□□□ -1.3
SCN1A-217ENST00000637988 CCT6AP40227 531 aaKnown RBP6.94□□□□□ -1.3
SCN1A-217ENST00000637988 CKAP4Q07065 602 aaKnown RBP6.94□□□□□ -1.3
SCN1A-217ENST00000637988 HLTFQ14527 1009 aaKnown RBP eCLIP6.94□□□□□ -1.36e-7■■■■□ 22.5
SCN1A-217ENST00000637988 MICU3Q86XE3 530 aa6.94□□□□□ -1.3
SCN1A-217ENST00000637988 RNF216Q9NWF9 866 aaPredicted RBP6.94□□□□□ -1.3
SCN1A-217ENST00000637988 GINS2Q9Y248 185 aa6.94□□□□□ -1.3
SCN1A-217ENST00000637988 TOP2BQ02880 1626 aa6.94□□□□□ -1.3
SCN1A-217ENST00000637988 KIAA0586Q9BVV6 1533 aa6.94□□□□□ -1.3
SCN1A-217ENST00000637988 UFL1O94874 794 aa6.94□□□□□ -1.3
SCN1A-217ENST00000637988 OATP04181 439 aa6.94□□□□□ -1.3
SCN1A-217ENST00000637988 ARID4AP29374 1257 aaPredicted RBP6.94□□□□□ -1.3
SCN1A-217ENST00000637988 TMPOP42166 694 aaKnown RBP6.94□□□□□ -1.3
SCN1A-217ENST00000637988 MCM9Q9NXL9 1143 aa6.94□□□□□ -1.3
SCN1A-217ENST00000637988 EXOC7Q9UPT5 735 aa6.94□□□□□ -1.3
SCN1A-217ENST00000637988 SFPQP23246 707 aaKnown RBP eCLIP6.94□□□□□ -1.3
SCN1A-217ENST00000637988 RTN1Q16799 776 aa6.94□□□□□ -1.3
SCN1A-217ENST00000637988 SPECC1LQ69YQ0 1117 aa6.94□□□□□ -1.3
SCN1A-217ENST00000637988 TMCO3Q6UWJ1 677 aa6.94□□□□□ -1.3
SCN1A-217ENST00000637988 SRGAP1Q7Z6B7 1085 aa6.94□□□□□ -1.3
SCN1A-217ENST00000637988 NOX5Q96PH1 765 aa6.94□□□□□ -1.3
SCN1A-217ENST00000637988 RSPH3Q86UC2 560 aa6.93□□□□□ -1.3
SCN1A-217ENST00000637988 AFAP1L2Q8N4X5 818 aa6.93□□□□□ -1.3
SCN1A-217ENST00000637988 MARCKSP29966 332 aaPredicted RBP6.93□□□□□ -1.3
SCN1A-217ENST00000637988 ZBTB16Q05516 673 aa6.93□□□□□ -1.3
SCN1A-217ENST00000637988 ALDH1L2Q3SY69 923 aa6.93□□□□□ -1.3
SCN1A-217ENST00000637988 LMBR1Q8WVP7 490 aa6.93□□□□□ -1.3
SCN1A-217ENST00000637988 PLEKHG3A1L390 1219 aa6.93□□□□□ -1.3
SCN1A-217ENST00000637988 E7EVH7 732 aa6.93□□□□□ -1.3
SCN1A-217ENST00000637988 PARP1P09874 1014 aaKnown RBP6.93□□□□□ -1.3
SCN1A-217ENST00000637988 GCNAQ96QF7 691 aa6.93□□□□□ -1.3
SCN1A-217ENST00000637988 DENND2AQ9ULE3 1009 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms