RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 BLOC1S2Q6QNY1 142 aa4.7□□□□□ -1.66
SCN1A-214ENST00000637038 CWC27Q6UX04 472 aaKnown RBP4.7□□□□□ -1.66
SCN1A-214ENST00000637038 FOXD4L3Q6VB84 417 aaPredicted RBP4.7□□□□□ -1.66
SCN1A-214ENST00000637038 KCNB2Q92953 911 aa4.7□□□□□ -1.66
SCN1A-214ENST00000637038 CCDC102AQ96A19 550 aa4.7□□□□□ -1.66
SCN1A-214ENST00000637038 IGSF5Q9NSI5 407 aa4.7□□□□□ -1.66
SCN1A-214ENST00000637038 PNMA6EA0A0J9YXQ4 647 aa4.7□□□□□ -1.66
SCN1A-214ENST00000637038 H3BQV1 296 aa4.7□□□□□ -1.66
SCN1A-214ENST00000637038 HOXC9P31274 260 aa4.7□□□□□ -1.66
SCN1A-214ENST00000637038 NOGQ13253 232 aa4.7□□□□□ -1.66
SCN1A-214ENST00000637038 LRRFIP1Q32MZ4 808 aaKnown RBP4.7□□□□□ -1.66
SCN1A-214ENST00000637038 LARP1BQ659C4 914 aaKnown RBP4.7□□□□□ -1.66
SCN1A-214ENST00000637038 LRP10Q7Z4F1 713 aa4.7□□□□□ -1.66
SCN1A-214ENST00000637038 CTU1Q7Z7A3 348 aaKnown RBP4.7□□□□□ -1.66
SCN1A-214ENST00000637038 ZNF526Q8TF50 670 aaPredicted RBP4.7□□□□□ -1.66
SCN1A-214ENST00000637038 HYPKQ9NX55 129 aa4.7□□□□□ -1.66
SCN1A-214ENST00000637038 SNX14Q9Y5W7 946 aa4.7□□□□□ -1.66
SCN1A-214ENST00000637038 TNRC6CQ9HCJ0 1690 aaKnown RBP4.7□□□□□ -1.66
SCN1A-214ENST00000637038 COL15A1P39059 1388 aa4.7□□□□□ -1.66
SCN1A-214ENST00000637038 MYH3P11055 1940 aa4.7□□□□□ -1.66
SCN1A-214ENST00000637038 A0A087WZG4 1122 aa4.69□□□□□ -1.66
SCN1A-214ENST00000637038 ZBTB7CA1YPR0 619 aa4.69□□□□□ -1.66
SCN1A-214ENST00000637038 GOLGA6L19H0YKK7 550 aa4.69□□□□□ -1.66
SCN1A-214ENST00000637038 ADCY5O95622 1261 aa4.69□□□□□ -1.66
SCN1A-214ENST00000637038 TPM4P67936 248 aa4.69□□□□□ -1.66
SCN1A-214ENST00000637038 TSHZ3Q63HK5 1081 aa4.69□□□□□ -1.66
SCN1A-214ENST00000637038 ZNF530Q6P9A1 599 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-214ENST00000637038 NKX2-3Q8TAU0 364 aa4.69□□□□□ -1.66
SCN1A-214ENST00000637038 PIBF1Q8WXW3 757 aa4.69□□□□□ -1.66
SCN1A-214ENST00000637038 FSD1Q9BTV5 496 aa4.69□□□□□ -1.66
SCN1A-214ENST00000637038 SNRKQ9NRH2 765 aa4.69□□□□□ -1.66
SCN1A-214ENST00000637038 ZBTB12Q9Y330 459 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-214ENST00000637038 LAMB2P55268 1798 aa4.69□□□□□ -1.66
SCN1A-214ENST00000637038 BTBD11A6QL63 1104 aa4.69□□□□□ -1.66
SCN1A-214ENST00000637038 GJB2P29033 226 aa4.69□□□□□ -1.66
SCN1A-214ENST00000637038 AK2P54819 239 aa4.69□□□□□ -1.66
SCN1A-214ENST00000637038 AACSQ86V21 672 aa4.69□□□□□ -1.66
SCN1A-214ENST00000637038 FUCA2Q9BTY2 467 aa4.69□□□□□ -1.66
SCN1A-214ENST00000637038 USP44Q9H0E7 712 aa4.69□□□□□ -1.66
SCN1A-214ENST00000637038 PALD1Q9ULE6 856 aa4.69□□□□□ -1.66
SCN1A-214ENST00000637038 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.69□□□□□ -1.66
SCN1A-214ENST00000637038 NEMFO60524 1076 aa4.69□□□□□ -1.66
SCN1A-214ENST00000637038 KDM4AO75164 1064 aa4.69□□□□□ -1.66
SCN1A-214ENST00000637038 SYT1P21579 422 aa4.69□□□□□ -1.66
SCN1A-214ENST00000637038 DGKZQ13574 1117 aa4.69□□□□□ -1.66
SCN1A-214ENST00000637038 NOLC1Q14978 699 aaKnown RBP eCLIP4.69□□□□□ -1.66
SCN1A-214ENST00000637038 PRPF40BQ6NWY9 871 aaKnown RBP4.69□□□□□ -1.66
SCN1A-214ENST00000637038 CCDC83Q8IWF9 413 aa4.69□□□□□ -1.66
SCN1A-214ENST00000637038 PI4K2BQ8TCG2 481 aa4.69□□□□□ -1.66
SCN1A-214ENST00000637038 BICD2Q8TD16 824 aa4.69□□□□□ -1.66
SCN1A-214ENST00000637038 TTC14Q96N46 770 aa4.69□□□□□ -1.66
SCN1A-214ENST00000637038 TNMDQ9H2S6 317 aa4.69□□□□□ -1.66
SCN1A-214ENST00000637038 RNF181Q9P0P0 153 aa4.69□□□□□ -1.66
SCN1A-214ENST00000637038 CFAP45Q9UL16 551 aa4.69□□□□□ -1.66
SCN1A-214ENST00000637038 CNPY2Q9Y2B0 182 aa4.69□□□□□ -1.66
SCN1A-214ENST00000637038 QSER1Q2KHR3 1735 aa4.69□□□□□ -1.66
SCN1A-214ENST00000637038 CCDC171Q6TFL3 1326 aa4.69□□□□□ -1.66
SCN1A-214ENST00000637038 CTAGE5O15320 804 aa4.69□□□□□ -1.66
SCN1A-214ENST00000637038 ALDH1A1P00352 501 aa4.69□□□□□ -1.66
SCN1A-214ENST00000637038 MYRIPQ8NFW9 859 aa4.69□□□□□ -1.66
SCN1A-214ENST00000637038 FAM200AQ8TCP9 573 aa4.69□□□□□ -1.66
SCN1A-214ENST00000637038 ZNF592Q92610 1267 aa4.69□□□□□ -1.66
SCN1A-214ENST00000637038 TSPYL2Q9H2G4 693 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-214ENST00000637038 CCNL1Q9UK58 526 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-214ENST00000637038 BCS1LQ9Y276 419 aa4.69□□□□□ -1.66
SCN1A-214ENST00000637038 COL4A1P02462 1669 aa4.68□□□□□ -1.66
SCN1A-214ENST00000637038 PI4KAP2A4QPH2 592 aa4.68□□□□□ -1.66
SCN1A-214ENST00000637038 OTUD7BQ6GQQ9 843 aa4.68□□□□□ -1.66
SCN1A-214ENST00000637038 CCDC73Q6ZRK6 1079 aa4.68□□□□□ -1.66
SCN1A-214ENST00000637038 FAM43BQ6ZT52 329 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-214ENST00000637038 PI4KAP1Q8N8J0 262 aa4.68□□□□□ -1.66
SCN1A-214ENST00000637038 IP6K1Q92551 441 aa4.68□□□□□ -1.66
SCN1A-214ENST00000637038 SPATA32Q96LK8 384 aa4.68□□□□□ -1.66
SCN1A-214ENST00000637038 ZNF396Q96N95 335 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-214ENST00000637038 LSG1Q9H089 658 aaKnown RBP4.68□□□□□ -1.66
SCN1A-214ENST00000637038 WBP1LQ9NX94 342 aa4.68□□□□□ -1.66
SCN1A-214ENST00000637038 BRWD3Q6RI45 1802 aa4.68□□□□□ -1.66
SCN1A-214ENST00000637038 KCPQ6ZWJ8 1503 aa4.68□□□□□ -1.66
SCN1A-214ENST00000637038 GLTPD2A6NH11 291 aa4.68□□□□□ -1.66
SCN1A-214ENST00000637038 MAP4K4O95819 1239 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-214ENST00000637038 HMGB1P09429 215 aaKnown RBP4.68□□□□□ -1.66
SCN1A-214ENST00000637038 HCLS1P14317 486 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-214ENST00000637038 IL2RBP14784 551 aa4.68□□□□□ -1.66
SCN1A-214ENST00000637038 C9orf131Q5VYM1 1079 aa4.68□□□□□ -1.66
SCN1A-214ENST00000637038 LARP1Q6PKG0 1096 aaKnown RBP4.68□□□□□ -1.66
SCN1A-214ENST00000637038 KSR2Q6VAB6 950 aa4.68□□□□□ -1.66
SCN1A-214ENST00000637038 RUFY3Q7L099 469 aa4.68□□□□□ -1.66
SCN1A-214ENST00000637038 ARHGAP30Q7Z6I6 1101 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-214ENST00000637038 PDCL2Q8N4E4 241 aa4.68□□□□□ -1.66
SCN1A-214ENST00000637038 NAT10Q9H0A0 1025 aaKnown RBP4.68□□□□□ -1.66
SCN1A-214ENST00000637038 IRF2BPLQ9H1B7 796 aa4.68□□□□□ -1.66
SCN1A-214ENST00000637038 GDPD2Q9HCC8 539 aa4.68□□□□□ -1.66
SCN1A-214ENST00000637038 ABT1Q9ULW3 272 aaKnown RBP4.68□□□□□ -1.66
SCN1A-214ENST00000637038 ELP1O95163 1332 aa4.68□□□□□ -1.66
SCN1A-214ENST00000637038 WDR17Q8IZU2 1322 aa4.68□□□□□ -1.66
SCN1A-214ENST00000637038 BECN2A8MW95 431 aa4.68□□□□□ -1.66
SCN1A-214ENST00000637038 HSPA8P11142 646 aaKnown RBP4.68□□□□□ -1.66
SCN1A-214ENST00000637038 MTX1Q13505 466 aa4.68□□□□□ -1.66
SCN1A-214ENST00000637038 RIC3Q7Z5B4 369 aa4.68□□□□□ -1.66
SCN1A-214ENST00000637038 LINS1Q8NG48 757 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms