RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 ANAPC15P60006 121 aa20.34■□□□□ 0.85
CLN3-252ENST00000636907 ZNF589Q86UQ0 364 aaPredicted RBP20.34■□□□□ 0.85
CLN3-252ENST00000636907 ANO8Q9HCE9 1232 aaPredicted RBP20.34■□□□□ 0.85
CLN3-252ENST00000636907 CD2BP2O95400 341 aaKnown RBP20.32■□□□□ 0.84
CLN3-252ENST00000636907 GRAPQ13588 217 aa20.32■□□□□ 0.84
CLN3-252ENST00000636907 UBE4AQ14139 1066 aa20.32■□□□□ 0.84
CLN3-252ENST00000636907 SLFNL1Q499Z3 407 aa20.32■□□□□ 0.84
CLN3-252ENST00000636907 GRAPLQ8TC17 118 aaPredicted RBP20.32■□□□□ 0.84
CLN3-252ENST00000636907 IL17RAQ96F46 866 aa20.32■□□□□ 0.84
CLN3-252ENST00000636907 SEC62Q99442 399 aaKnown RBP20.32■□□□□ 0.84
CLN3-252ENST00000636907 WTIPA6NIX2 430 aaPredicted RBP20.32■□□□□ 0.84
CLN3-252ENST00000636907 RNF113AO15541 343 aaKnown RBP20.32■□□□□ 0.84
CLN3-252ENST00000636907 BCAMP50895 628 aa20.32■□□□□ 0.84
CLN3-252ENST00000636907 CRY2Q49AN0 593 aa20.32■□□□□ 0.84
CLN3-252ENST00000636907 NRXN2Q9P2S2 1712 aa20.31■□□□□ 0.84
CLN3-252ENST00000636907 CYP2E1P05181 493 aaPredicted RBP20.31■□□□□ 0.84
CLN3-252ENST00000636907 SLC15A2Q16348 729 aa20.31■□□□□ 0.84
CLN3-252ENST00000636907 MCMDC2Q4G0Z9 681 aa20.31■□□□□ 0.84
CLN3-252ENST00000636907 ZMYM1Q5SVZ6 1142 aa20.31■□□□□ 0.84
CLN3-252ENST00000636907 RPGRQ92834 1020 aaKnown RBP20.31■□□□□ 0.84
CLN3-252ENST00000636907 HMG20BQ9P0W2 317 aa20.31■□□□□ 0.84
CLN3-252ENST00000636907 CCDC129Q6ZRS4 1044 aa20.3■□□□□ 0.84
CLN3-252ENST00000636907 MAP4K1Q92918 833 aa20.3■□□□□ 0.84
CLN3-252ENST00000636907 ANKRD2Q9GZV1 360 aa20.3■□□□□ 0.84
CLN3-252ENST00000636907 HELLSQ9NRZ9 838 aa20.3■□□□□ 0.84
CLN3-252ENST00000636907 RASGRF1Q13972 1273 aa20.29■□□□□ 0.84
CLN3-252ENST00000636907 STK32BQ9NY57 414 aa20.29■□□□□ 0.84
CLN3-252ENST00000636907 SF3B2Q13435 895 aaKnown RBP20.29■□□□□ 0.84
CLN3-252ENST00000636907 TTF1Q15361 905 aaPredicted RBP20.29■□□□□ 0.84
CLN3-252ENST00000636907 LRRFIP1Q32MZ4 808 aaKnown RBP20.29■□□□□ 0.84
CLN3-252ENST00000636907 MSL1Q68DK7 614 aa20.29■□□□□ 0.84
CLN3-252ENST00000636907 RASEFQ8IZ41 740 aa20.29■□□□□ 0.84
CLN3-252ENST00000636907 SPATA5Q8NB90 893 aa20.29■□□□□ 0.84
CLN3-252ENST00000636907 PIH1D3Q9NQM4 214 aaKnown RBP20.29■□□□□ 0.84
CLN3-252ENST00000636907 RBM8AQ9Y5S9 174 aaKnown RBP20.29■□□□□ 0.84
CLN3-252ENST00000636907 SNX14Q9Y5W7 946 aa20.29■□□□□ 0.84
CLN3-252ENST00000636907 KLRG2A4D1S0 409 aaPredicted RBP20.28■□□□□ 0.84
CLN3-252ENST00000636907 MMP10P09238 476 aa20.28■□□□□ 0.84
CLN3-252ENST00000636907 BAG6P46379 1132 aa20.28■□□□□ 0.84
CLN3-252ENST00000636907 NECTIN1Q15223 517 aa20.28■□□□□ 0.84
CLN3-252ENST00000636907 PRPF40BQ6NWY9 871 aaKnown RBP20.28■□□□□ 0.84
CLN3-252ENST00000636907 RBM17Q96I25 401 aaKnown RBP20.28■□□□□ 0.84
CLN3-252ENST00000636907 ANKRD31Q8N7Z5 1873 aa20.27■□□□□ 0.84
CLN3-252ENST00000636907 ZFYP08048 801 aaPredicted RBP20.27■□□□□ 0.84
CLN3-252ENST00000636907 GYG1P46976 350 aa20.27■□□□□ 0.84
CLN3-252ENST00000636907 KCNJ4P48050 445 aa20.27■□□□□ 0.84
CLN3-252ENST00000636907 DEFB132Q7Z7B7 95 aa20.27■□□□□ 0.84
CLN3-252ENST00000636907 SLC51AQ86UW1 340 aa20.27■□□□□ 0.84
CLN3-252ENST00000636907 MYH7P12883 1935 aa20.27■□□□□ 0.84
CLN3-252ENST00000636907 ZNF804BA4D1E1 1349 aa20.27■□□□□ 0.84
CLN3-252ENST00000636907 MAST3O60307 1309 aa20.27■□□□□ 0.84
CLN3-252ENST00000636907 QSER1Q2KHR3 1735 aa20.27■□□□□ 0.83
CLN3-252ENST00000636907 M0R2C6 588 aa20.26■□□□□ 0.83
CLN3-252ENST00000636907 KCNB2Q92953 911 aa20.26■□□□□ 0.83
CLN3-252ENST00000636907 PARP3Q9Y6F1 533 aa20.26■□□□□ 0.83
CLN3-252ENST00000636907 K7ELQ4 463 aaPredicted RBP20.26■□□□□ 0.83
CLN3-252ENST00000636907 ST18O60284 1047 aa20.26■□□□□ 0.83
CLN3-252ENST00000636907 HOXA10P31260 410 aaPredicted RBP20.26■□□□□ 0.83
CLN3-252ENST00000636907 OSBP2Q969R2 916 aa20.26■□□□□ 0.83
CLN3-252ENST00000636907 FAM84BQ96KN1 310 aaPredicted RBP20.26■□□□□ 0.83
CLN3-252ENST00000636907 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.26■□□□□ 0.833e-6■■■■■ 36.1
CLN3-252ENST00000636907 MYO5AQ9Y4I1 1855 aaKnown RBP20.25■□□□□ 0.83
CLN3-252ENST00000636907 KLRK1P26718 216 aa20.25■□□□□ 0.83
CLN3-252ENST00000636907 NEK4P51957 841 aa20.25■□□□□ 0.83
CLN3-252ENST00000636907 CREB3L3Q68CJ9 461 aa20.25■□□□□ 0.83
CLN3-252ENST00000636907 SPRYD3Q8NCJ5 442 aa20.25■□□□□ 0.83
CLN3-252ENST00000636907 BRIP1Q9BX63 1249 aa20.25■□□□□ 0.83
CLN3-252ENST00000636907 IDH1O75874 414 aaKnown RBP20.24■□□□□ 0.83
CLN3-252ENST00000636907 WASHC4Q2M389 1173 aa20.24■□□□□ 0.83
CLN3-252ENST00000636907 CAVIN4Q5BKX8 364 aa20.24■□□□□ 0.83
CLN3-252ENST00000636907 ZSCAN25Q6NSZ9 544 aa20.24■□□□□ 0.83
CLN3-252ENST00000636907 GNL3LQ9NVN8 582 aaKnown RBP20.24■□□□□ 0.83
CLN3-252ENST00000636907 DOCK2Q92608 1830 aa20.23■□□□□ 0.83
CLN3-252ENST00000636907 SLC27A2O14975 620 aa20.23■□□□□ 0.83
CLN3-252ENST00000636907 ADD2P35612 726 aa20.23■□□□□ 0.83
CLN3-252ENST00000636907 FBXO33Q7Z6M2 555 aa20.23■□□□□ 0.83
CLN3-252ENST00000636907 APPBP2Q92624 585 aa20.23■□□□□ 0.83
CLN3-252ENST00000636907 CRAMP1Q96RY5 1269 aa20.23■□□□□ 0.83
CLN3-252ENST00000636907 IQSEC3Q9UPP2 1182 aaPredicted RBP20.23■□□□□ 0.83
CLN3-252ENST00000636907 SLC9C2Q5TAH2 1124 aa20.22■□□□□ 0.83
CLN3-252ENST00000636907 VPS53Q5VIR6 699 aa20.22■□□□□ 0.83
CLN3-252ENST00000636907 VPS37DQ86XT2 251 aa20.22■□□□□ 0.83
CLN3-252ENST00000636907 UPF3BQ9BZI7 483 aaKnown RBP20.22■□□□□ 0.83
CLN3-252ENST00000636907 SLKQ9H2G2 1235 aaPredicted RBP20.22■□□□□ 0.83
CLN3-252ENST00000636907 ANKIB1Q9P2G1 1089 aa20.22■□□□□ 0.83
CLN3-252ENST00000636907 WWC3Q9ULE0 1092 aa20.22■□□□□ 0.83
CLN3-252ENST00000636907 COL1A1P02452 1464 aaPredicted RBP20.22■□□□□ 0.83
CLN3-252ENST00000636907 PUS7LQ9H0K6 701 aaKnown RBP20.22■□□□□ 0.83
CLN3-252ENST00000636907 XDHP47989 1333 aa20.22■□□□□ 0.83
CLN3-252ENST00000636907 IRS2Q9Y4H2 1338 aa20.22■□□□□ 0.83
CLN3-252ENST00000636907 BBOX1O75936 387 aa20.21■□□□□ 0.83
CLN3-252ENST00000636907 PDE6AP16499 860 aa20.21■□□□□ 0.83
CLN3-252ENST00000636907 ZKSCAN1P17029 563 aaPredicted RBP20.21■□□□□ 0.83
CLN3-252ENST00000636907 UBE3CQ15386 1083 aa20.21■□□□□ 0.83
CLN3-252ENST00000636907 DSCC1Q9BVC3 393 aa20.21■□□□□ 0.83
CLN3-252ENST00000636907 LEMD3Q9Y2U8 911 aa20.21■□□□□ 0.83
CLN3-252ENST00000636907 U3KPZ7 1027 aaPredicted RBP20.21■□□□□ 0.83
CLN3-252ENST00000636907 GPSM2P81274 684 aa20.2■□□□□ 0.82
CLN3-252ENST00000636907 ADCK5Q3MIX3 580 aa20.2■□□□□ 0.82
CLN3-252ENST00000636907 RNF20Q5VTR2 975 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms