RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 SASH1O94885 1247 aa19.09■□□□□ 0.65
CLN3-249ENST00000636685 INHBEP58166 350 aa19.09■□□□□ 0.65
CLN3-249ENST00000636685 CHRDL2Q6WN34 429 aa19.08■□□□□ 0.64
CLN3-249ENST00000636685 SLC10A4Q96EP9 437 aa19.08■□□□□ 0.64
CLN3-249ENST00000636685 RANBP2P49792 3224 aaKnown RBP19.07■□□□□ 0.64
CLN3-249ENST00000636685 TRIM26Q12899 539 aaPredicted RBP19.07■□□□□ 0.64
CLN3-249ENST00000636685 CRHR2Q13324 411 aa19.07■□□□□ 0.64
CLN3-249ENST00000636685 PODNQ7Z5L7 613 aa19.07■□□□□ 0.64
CLN3-249ENST00000636685 PLBD2Q8NHP8 589 aa19.07■□□□□ 0.64
CLN3-249ENST00000636685 ZNF333Q96JL9 665 aa19.07■□□□□ 0.64
CLN3-249ENST00000636685 WNK4Q96J92 1243 aa19.06■□□□□ 0.64
CLN3-249ENST00000636685 CLMNQ96JQ2 1002 aa19.06■□□□□ 0.64
CLN3-249ENST00000636685 WTIPA6NIX2 430 aaPredicted RBP19.05■□□□□ 0.64
CLN3-249ENST00000636685 DACT2Q5SW24 774 aa19.05■□□□□ 0.64
CLN3-249ENST00000636685 OGFOD1Q8N543 542 aa19.05■□□□□ 0.64
CLN3-249ENST00000636685 FBXW7Q969H0 707 aa19.05■□□□□ 0.64
CLN3-249ENST00000636685 CHPF2Q9P2E5 772 aa19.05■□□□□ 0.64
CLN3-249ENST00000636685 XDHP47989 1333 aa19.04■□□□□ 0.64
CLN3-249ENST00000636685 A0A0C4DFX4 3053 aa19.04■□□□□ 0.64
CLN3-249ENST00000636685 ZBTB48P10074 688 aaPredicted RBP19.04■□□□□ 0.64
CLN3-249ENST00000636685 SP3Q02447 781 aa19.04■□□□□ 0.64
CLN3-249ENST00000636685 KRT24Q2M2I5 525 aa19.04■□□□□ 0.64
CLN3-249ENST00000636685 SLC4A8Q2Y0W8 1093 aa19.04■□□□□ 0.64
CLN3-249ENST00000636685 ANKRD13DQ6ZTN6 518 aa19.04■□□□□ 0.64
CLN3-249ENST00000636685 APOBEC3FQ8IUX4 373 aaKnown RBP19.04■□□□□ 0.64
CLN3-249ENST00000636685 RBM27Q9P2N5 1060 aaKnown RBP19.04■□□□□ 0.64
CLN3-249ENST00000636685 COL6A3P12111 3177 aa19.03■□□□□ 0.64
CLN3-249ENST00000636685 MYCP01106 439 aaPredicted RBP19.03■□□□□ 0.64
CLN3-249ENST00000636685 ATP2B4P23634 1241 aa19.03■□□□□ 0.64
CLN3-249ENST00000636685 CCDC85AQ96PX6 553 aaPredicted RBP19.03■□□□□ 0.64
CLN3-249ENST00000636685 SLC9C1Q4G0N8 1177 aa19.02■□□□□ 0.64
CLN3-249ENST00000636685 PTCH2Q9Y6C5 1203 aa19.02■□□□□ 0.64
CLN3-249ENST00000636685 MAPK8IP3Q9UPT6 1336 aa19.01■□□□□ 0.63
CLN3-249ENST00000636685 GJA5P36382 358 aa19.01■□□□□ 0.63
CLN3-249ENST00000636685 MAP3K11Q16584 847 aa19.01■□□□□ 0.63
CLN3-249ENST00000636685 BABAM1Q9NWV8 329 aa19.01■□□□□ 0.63
CLN3-249ENST00000636685 SPEF2Q9C093 1822 aa19.01■□□□□ 0.63
CLN3-249ENST00000636685 SSC5DA1L4H1 1573 aa19.01■□□□□ 0.63
CLN3-249ENST00000636685 TRIM28Q13263 835 aaKnown RBP19■□□□□ 0.63
CLN3-249ENST00000636685 CCDC152Q4G0S7 254 aa19■□□□□ 0.63
CLN3-249ENST00000636685 OTUD7BQ6GQQ9 843 aa19■□□□□ 0.63
CLN3-249ENST00000636685 NBPF11Q86T75 865 aa19■□□□□ 0.63
CLN3-249ENST00000636685 PTPN18Q99952 460 aa19■□□□□ 0.63
CLN3-249ENST00000636685 MYO3BQ8WXR4 1341 aa19■□□□□ 0.63
CLN3-249ENST00000636685 MED23Q9ULK4 1368 aa18.99■□□□□ 0.63
CLN3-249ENST00000636685 STRIP1Q5VSL9 837 aa18.99■□□□□ 0.63
CLN3-249ENST00000636685 ZBTB38Q8NAP3 1195 aaPredicted RBP18.99■□□□□ 0.63
CLN3-249ENST00000636685 ZBED3Q96IU2 234 aaPredicted RBP18.99■□□□□ 0.63
CLN3-249ENST00000636685 DEFB129Q9H1M3 183 aa18.99■□□□□ 0.63
CLN3-249ENST00000636685 RIPK4P57078 832 aa18.98■□□□□ 0.63
CLN3-249ENST00000636685 KIAA0825Q8IV33 1275 aa18.98■□□□□ 0.63
CLN3-249ENST00000636685 ANKRD18AQ8IVF6 992 aa18.98■□□□□ 0.63
CLN3-249ENST00000636685 JARID2Q92833 1246 aaPredicted RBP18.98■□□□□ 0.63
CLN3-249ENST00000636685 ZSWIM8A7E2V4 1837 aa18.97■□□□□ 0.63
CLN3-249ENST00000636685 COL1A1P02452 1464 aaPredicted RBP18.97■□□□□ 0.63
CLN3-249ENST00000636685 PPP1R12BO60237 982 aaPredicted RBP18.97■□□□□ 0.63
CLN3-249ENST00000636685 HDGFL1Q5TGJ6 251 aa18.97■□□□□ 0.63
CLN3-249ENST00000636685 ECM29Q5VYK3 1845 aa18.97■□□□□ 0.63
CLN3-249ENST00000636685 SH3TC2Q8TF17 1288 aa18.96■□□□□ 0.63
CLN3-249ENST00000636685 DPF3Q92784 378 aa18.96■□□□□ 0.63
CLN3-249ENST00000636685 OTOFQ9HC10 1997 aa18.95■□□□□ 0.62
CLN3-249ENST00000636685 TESPA1A2RU30 521 aaPredicted RBP18.95■□□□□ 0.62
CLN3-249ENST00000636685 PDE8AO60658 829 aa18.95■□□□□ 0.62
CLN3-249ENST00000636685 HSP90B1P14625 803 aaKnown RBP18.95■□□□□ 0.62
CLN3-249ENST00000636685 TXNRD3Q86VQ6 643 aa18.95■□□□□ 0.62
CLN3-249ENST00000636685 MMP14P50281 582 aa18.94■□□□□ 0.62
CLN3-249ENST00000636685 TTLL5Q6EMB2 1281 aa18.94■□□□□ 0.62
CLN3-249ENST00000636685 COA1Q9GZY4 146 aa18.94■□□□□ 0.62
CLN3-249ENST00000636685 PNNQ9H307 717 aaKnown RBP18.94■□□□□ 0.62
CLN3-249ENST00000636685 DBF4Q9UBU7 674 aaPredicted RBP18.94■□□□□ 0.62
CLN3-249ENST00000636685 PCDHAC2Q9Y5I4 1007 aa18.94■□□□□ 0.62
CLN3-249ENST00000636685 CCT4P50991 539 aaKnown RBP18.93■□□□□ 0.62
CLN3-249ENST00000636685 ARHGEF6Q15052 776 aa18.93■□□□□ 0.62
CLN3-249ENST00000636685 NBPF12Q5TAG4 269 aaPredicted RBP18.93■□□□□ 0.62
CLN3-249ENST00000636685 PRO3102Q9H379 93 aa18.93■□□□□ 0.62
CLN3-249ENST00000636685 MINPP1Q9UNW1 487 aa18.93■□□□□ 0.62
CLN3-249ENST00000636685 UNCXA6NJT0 531 aa18.92■□□□□ 0.62
CLN3-249ENST00000636685 USP2O75604 605 aaPredicted RBP18.92■□□□□ 0.62
CLN3-249ENST00000636685 PCCAP05165 728 aaPredicted RBP18.92■□□□□ 0.62
CLN3-249ENST00000636685 IREB2P48200 963 aaKnown RBP18.92■□□□□ 0.62
CLN3-249ENST00000636685 DLGAP5Q15398 846 aa18.92■□□□□ 0.62
CLN3-249ENST00000636685 RIC3Q7Z5B4 369 aa18.92■□□□□ 0.62
CLN3-249ENST00000636685 SHISA4Q96DD7 197 aa18.92■□□□□ 0.62
CLN3-249ENST00000636685 MYD88Q99836 296 aa18.92■□□□□ 0.62
CLN3-249ENST00000636685 HYPKQ9NX55 129 aa18.92■□□□□ 0.62
CLN3-249ENST00000636685 LAS1LQ9Y4W2 734 aaKnown RBP18.92■□□□□ 0.62
CLN3-249ENST00000636685 CHL1O00533 1208 aa18.91■□□□□ 0.62
CLN3-249ENST00000636685 GTF2IP78347 998 aa18.91■□□□□ 0.62
CLN3-249ENST00000636685 TAF1CQ15572 869 aaPredicted RBP18.91■□□□□ 0.62
CLN3-249ENST00000636685 SUPT20HL1Q3ZLR7 823 aa18.91■□□□□ 0.62
CLN3-249ENST00000636685 OPTNQ96CV9 577 aa18.91■□□□□ 0.62
CLN3-249ENST00000636685 MS4A4AQ96JQ5 239 aa18.91■□□□□ 0.62
CLN3-249ENST00000636685 ARHGAP39Q9C0H5 1083 aa18.91■□□□□ 0.62
CLN3-249ENST00000636685 ELP3Q9H9T3 547 aa18.91■□□□□ 0.62
CLN3-249ENST00000636685 PPP2R3BQ9Y5P8 575 aa18.91■□□□□ 0.62
CLN3-249ENST00000636685 LAMA3Q16787 3333 aa18.91■□□□□ 0.62
CLN3-249ENST00000636685 MYH3P11055 1940 aa18.9■□□□□ 0.62
CLN3-249ENST00000636685 CLRN2A0PK11 232 aa18.9■□□□□ 0.62
CLN3-249ENST00000636685 KLRK1P26718 216 aa18.9■□□□□ 0.62
CLN3-249ENST00000636685 ANKRD13AQ8IZ07 590 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms