RNA–Protein interactions for RNA: ENST00000623219.3

LINC00643-205, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 962 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-205ENST00000623219 SAMD7Q7Z3H4 446 aa18.66■□□□□ 0.58
LINC00643-205ENST00000623219 BICC1Q9H694 974 aaKnown RBP18.66■□□□□ 0.58
LINC00643-205ENST00000623219 MKRN1Q9UHC7 482 aaKnown RBP18.66■□□□□ 0.58
LINC00643-205ENST00000623219 KIF16BQ96L93 1317 aa18.66■□□□□ 0.58
LINC00643-205ENST00000623219 TRAF5O00463 557 aa18.65■□□□□ 0.58
LINC00643-205ENST00000623219 KLRK1P26718 216 aa18.65■□□□□ 0.58
LINC00643-205ENST00000623219 TBC1D10BQ4KMP7 808 aaPredicted RBP18.65■□□□□ 0.58
LINC00643-205ENST00000623219 LDHAL6AQ6ZMR3 332 aa18.65■□□□□ 0.58
LINC00643-205ENST00000623219 TXNRD3Q86VQ6 643 aa18.65■□□□□ 0.58
LINC00643-205ENST00000623219 ZNF594Q96JF6 807 aaPredicted RBP18.65■□□□□ 0.58
LINC00643-205ENST00000623219 MYO3BQ8WXR4 1341 aa18.65■□□□□ 0.58
LINC00643-205ENST00000623219 IRS2Q9Y4H2 1338 aa18.65■□□□□ 0.58
LINC00643-205ENST00000623219 RASSF10A6NK89 507 aa18.64■□□□□ 0.57
LINC00643-205ENST00000623219 EGFRP00533 1210 aa18.64■□□□□ 0.57
LINC00643-205ENST00000623219 RARSP54136 660 aaKnown RBP18.64■□□□□ 0.57
LINC00643-205ENST00000623219 ZNF280AP59817 542 aaPredicted RBP18.64■□□□□ 0.57
LINC00643-205ENST00000623219 C15orf52Q6ZUT6 534 aaKnown RBP18.64■□□□□ 0.57
LINC00643-205ENST00000623219 GMLQ99445 158 aa18.64■□□□□ 0.57
LINC00643-205ENST00000623219 CNNM1Q9NRU3 951 aa18.64■□□□□ 0.57
LINC00643-205ENST00000623219 TAF5LO75529 589 aa18.63■□□□□ 0.57
LINC00643-205ENST00000623219 FMR1Q06787 632 aaKnown RBP eCLIP18.63■□□□□ 0.57
LINC00643-205ENST00000623219 DACT2Q5SW24 774 aa18.63■□□□□ 0.57
LINC00643-205ENST00000623219 STRIP1Q5VSL9 837 aa18.63■□□□□ 0.57
LINC00643-205ENST00000623219 CDC37L1Q7L3B6 337 aa18.63■□□□□ 0.57
LINC00643-205ENST00000623219 ANKRD44Q8N8A2 993 aa18.63■□□□□ 0.57
LINC00643-205ENST00000623219 GLIS2Q9BZE0 524 aaPredicted RBP18.63■□□□□ 0.57
LINC00643-205ENST00000623219 API5Q9BZZ5 524 aaKnown RBP18.63■□□□□ 0.57
LINC00643-205ENST00000623219 USP44Q9H0E7 712 aa18.63■□□□□ 0.57
LINC00643-205ENST00000623219 ABT1Q9ULW3 272 aaKnown RBP18.63■□□□□ 0.57
LINC00643-205ENST00000623219 NOB1Q9ULX3 412 aaKnown RBP18.63■□□□□ 0.57
LINC00643-205ENST00000623219 PAPPA2Q9BXP8 1791 aa18.63■□□□□ 0.57
LINC00643-205ENST00000623219 HNRNPUQ00839 825 aaKnown RBP eCLIP18.62■□□□□ 0.57
LINC00643-205ENST00000623219 HELBQ8NG08 1087 aaPredicted RBP18.62■□□□□ 0.57
LINC00643-205ENST00000623219 AKAP11Q9UKA4 1901 aa18.61■□□□□ 0.57
LINC00643-205ENST00000623219 MROH5Q6ZUA9 1318 aa18.61■□□□□ 0.57
LINC00643-205ENST00000623219 USP17L8P0C7I0 530 aa18.61■□□□□ 0.57
LINC00643-205ENST00000623219 ZNF804AQ7Z570 1209 aa18.61■□□□□ 0.57
LINC00643-205ENST00000623219 FBXW7Q969H0 707 aa18.61■□□□□ 0.57
LINC00643-205ENST00000623219 SNAP23O00161 211 aa18.6■□□□□ 0.57
LINC00643-205ENST00000623219 DEFB115Q30KQ5 88 aa18.6■□□□□ 0.57
LINC00643-205ENST00000623219 RBM26Q5T8P6 1007 aaKnown RBP18.6■□□□□ 0.57
LINC00643-205ENST00000623219 CST9Q5W186 159 aa18.6■□□□□ 0.57
LINC00643-205ENST00000623219 ARHGAP45Q92619 1136 aa18.6■□□□□ 0.57
LINC00643-205ENST00000623219 DCPSQ96C86 337 aaKnown RBP18.6■□□□□ 0.57
LINC00643-205ENST00000623219 CD209Q9NNX6 404 aa18.6■□□□□ 0.57
LINC00643-205ENST00000623219 MYOZ2Q9NPC6 264 aa18.6■□□□□ 0.57
LINC00643-205ENST00000623219 GGA3Q9NZ52 723 aa18.6■□□□□ 0.57
LINC00643-205ENST00000623219 CELF2O95319 508 aaKnown RBP18.59■□□□□ 0.57
LINC00643-205ENST00000623219 VEGFBP49765 207 aa18.59■□□□□ 0.57
LINC00643-205ENST00000623219 MMP14P50281 582 aa18.59■□□□□ 0.57
LINC00643-205ENST00000623219 TTLL5Q6EMB2 1281 aa18.59■□□□□ 0.57
LINC00643-205ENST00000623219 KRT26Q7Z3Y9 468 aa18.59■□□□□ 0.57
LINC00643-205ENST00000623219 TLL2Q9Y6L7 1015 aa18.59■□□□□ 0.57
LINC00643-205ENST00000623219 LAMB1P07942 1786 aa18.59■□□□□ 0.57
LINC00643-205ENST00000623219 PITPNM2Q9BZ72 1349 aa18.58■□□□□ 0.57
LINC00643-205ENST00000623219 PLIN1O60240 522 aa18.58■□□□□ 0.56
LINC00643-205ENST00000623219 UBTFL1P0CB47 393 aaPredicted RBP18.58■□□□□ 0.56
LINC00643-205ENST00000623219 HSPA1AP0DMV8 641 aaKnown RBP18.58■□□□□ 0.56
LINC00643-205ENST00000623219 HSPA1BP0DMV9 641 aaKnown RBP18.58■□□□□ 0.56
LINC00643-205ENST00000623219 IL1R1P14778 569 aa18.58■□□□□ 0.56
LINC00643-205ENST00000623219 UBE4AQ14139 1066 aa18.58■□□□□ 0.56
LINC00643-205ENST00000623219 MXD3Q9BW11 206 aa18.58■□□□□ 0.56
LINC00643-205ENST00000623219 PUS3Q9BZE2 481 aaKnown RBP18.58■□□□□ 0.56
LINC00643-205ENST00000623219 RIPOR2Q9Y4F9 1068 aa18.58■□□□□ 0.56
LINC00643-205ENST00000623219 ZBED9Q6R2W3 1325 aa18.57■□□□□ 0.56
LINC00643-205ENST00000623219 GTF2IP78347 998 aa18.57■□□□□ 0.56
LINC00643-205ENST00000623219 USP48Q86UV5 1035 aa18.57■□□□□ 0.56
LINC00643-205ENST00000623219 OGFOD1Q8N543 542 aa18.57■□□□□ 0.56
LINC00643-205ENST00000623219 ZNF408Q9H9D4 720 aa18.57■□□□□ 0.56
LINC00643-205ENST00000623219 WDR33Q9C0J8 1336 aaKnown RBP18.56■□□□□ 0.56
LINC00643-205ENST00000623219 ADM5C9JUS6 153 aa18.56■□□□□ 0.56
LINC00643-205ENST00000623219 SAPCD2Q86UD0 394 aa18.56■□□□□ 0.56
LINC00643-205ENST00000623219 SULF1Q8IWU6 871 aa18.56■□□□□ 0.56
LINC00643-205ENST00000623219 HHIPL1Q96JK4 782 aa18.56■□□□□ 0.56
LINC00643-205ENST00000623219 HDAC5Q9UQL6 1122 aa18.56■□□□□ 0.56
LINC00643-205ENST00000623219 ASTN2O75129 1339 aaPredicted RBP18.55■□□□□ 0.56
LINC00643-205ENST00000623219 ECE1P42892 770 aa18.55■□□□□ 0.56
LINC00643-205ENST00000623219 SCARF1Q14162 830 aa18.55■□□□□ 0.56
LINC00643-205ENST00000623219 LRRC24Q50LG9 513 aa18.55■□□□□ 0.56
LINC00643-205ENST00000623219 ANGEL2Q5VTE6 544 aaKnown RBP18.55■□□□□ 0.56
LINC00643-205ENST00000623219 INTS3Q68E01 1043 aaKnown RBP18.55■□□□□ 0.56
LINC00643-205ENST00000623219 VGLL2Q8N8G2 317 aa18.55■□□□□ 0.56
LINC00643-205ENST00000623219 HDAC9Q9UKV0 1011 aa18.55■□□□□ 0.56
LINC00643-205ENST00000623219 COL1A1P02452 1464 aaPredicted RBP18.54■□□□□ 0.56
LINC00643-205ENST00000623219 OTOFQ9HC10 1997 aa18.54■□□□□ 0.56
LINC00643-205ENST00000623219 IPO8O15397 1037 aaKnown RBP18.54■□□□□ 0.56
LINC00643-205ENST00000623219 FKBP1AP62942 108 aaKnown RBP18.54■□□□□ 0.56
LINC00643-205ENST00000623219 METTL24Q5JXM2 366 aa18.54■□□□□ 0.56
LINC00643-205ENST00000623219 KIAA0825Q8IV33 1275 aa18.54■□□□□ 0.56
LINC00643-205ENST00000623219 CAPNS2Q96L46 248 aa18.54■□□□□ 0.56
LINC00643-205ENST00000623219 TRIM27P14373 513 aa18.53■□□□□ 0.56
LINC00643-205ENST00000623219 RFX5P48382 616 aaPredicted RBP18.53■□□□□ 0.56
LINC00643-205ENST00000623219 ATF7IPQ6VMQ6 1270 aa18.53■□□□□ 0.56
LINC00643-205ENST00000623219 PAXIP1Q6ZW49 1069 aaPredicted RBP18.53■□□□□ 0.56
LINC00643-205ENST00000623219 KLHDC4Q8TBB5 520 aa18.53■□□□□ 0.56
LINC00643-205ENST00000623219 FAM205AQ6ZU69 1335 aa18.52■□□□□ 0.56
LINC00643-205ENST00000623219 WNT10BO00744 389 aa18.52■□□□□ 0.56
LINC00643-205ENST00000623219 PDE8BO95263 885 aa18.52■□□□□ 0.56
LINC00643-205ENST00000623219 CYP4F22Q6NT55 531 aa18.52■□□□□ 0.56
LINC00643-205ENST00000623219 MEIS3Q99687 375 aa18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms