RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 SYT10Q6XYQ8 523 aa12.61□□□□□ -0.39
UPF3A-212ENST00000619079 GOLGA6L1Q8N7Z2 621 aa12.61□□□□□ -0.39
UPF3A-212ENST00000619079 NECAB1Q8N987 351 aa12.61□□□□□ -0.39
UPF3A-212ENST00000619079 MNS1Q8NEH6 495 aa12.61□□□□□ -0.39
UPF3A-212ENST00000619079 ALDH8A1Q9H2A2 487 aaPredicted RBP12.61□□□□□ -0.39
UPF3A-212ENST00000619079 TSPYL4Q9UJ04 414 aa12.61□□□□□ -0.39
UPF3A-212ENST00000619079 TPCN1Q9ULQ1 816 aa12.61□□□□□ -0.39
UPF3A-212ENST00000619079 N4BP2Q86UW6 1770 aaPredicted RBP12.61□□□□□ -0.39
UPF3A-212ENST00000619079 MAP4K4O95819 1239 aaPredicted RBP12.61□□□□□ -0.39
UPF3A-212ENST00000619079 ZSCAN26Q16670 478 aa12.61□□□□□ -0.39
UPF3A-212ENST00000619079 ADCK5Q3MIX3 580 aa12.61□□□□□ -0.39
UPF3A-212ENST00000619079 CCDC158Q5M9N0 1113 aa12.61□□□□□ -0.39
UPF3A-212ENST00000619079 FAM173BQ6P4H8 233 aa12.61□□□□□ -0.39
UPF3A-212ENST00000619079 NEK11Q8NG66 645 aa12.61□□□□□ -0.39
UPF3A-212ENST00000619079 GOLGA5Q8TBA6 731 aa12.61□□□□□ -0.39
UPF3A-212ENST00000619079 DDX54Q8TDD1 881 aaKnown RBP12.61□□□□□ -0.39
UPF3A-212ENST00000619079 ZSCAN16Q9H4T2 348 aaPredicted RBP12.61□□□□□ -0.39
UPF3A-212ENST00000619079 PSD3Q9NYI0 1048 aa12.61□□□□□ -0.39
UPF3A-212ENST00000619079 TFIP11Q9UBB9 837 aaKnown RBP12.61□□□□□ -0.39
UPF3A-212ENST00000619079 MEGF6O75095 1541 aa12.61□□□□□ -0.39
UPF3A-212ENST00000619079 EFCAB8A8MWE9 144 aa12.6□□□□□ -0.39
UPF3A-212ENST00000619079 SURF6O75683 361 aaKnown RBP12.6□□□□□ -0.39
UPF3A-212ENST00000619079 CASQ1P31415 396 aa12.6□□□□□ -0.39
UPF3A-212ENST00000619079 CCDC30Q5VVM6 783 aa12.6□□□□□ -0.39
UPF3A-212ENST00000619079 E4F1Q66K89 784 aaPredicted RBP12.6□□□□□ -0.39
UPF3A-212ENST00000619079 C11orf57Q6ZUT1 292 aaPredicted RBP12.6□□□□□ -0.39
UPF3A-212ENST00000619079 PGBD1Q96JS3 809 aa12.6□□□□□ -0.39
UPF3A-212ENST00000619079 KDRP35968 1356 aa12.6□□□□□ -0.39
UPF3A-212ENST00000619079 POLR3GO15318 223 aaPredicted RBP12.6□□□□□ -0.39
UPF3A-212ENST00000619079 SFPQP23246 707 aaKnown RBP eCLIP12.6□□□□□ -0.39
UPF3A-212ENST00000619079 NECTIN1Q15223 517 aa12.6□□□□□ -0.39
UPF3A-212ENST00000619079 NOM1Q5C9Z4 860 aaKnown RBP12.6□□□□□ -0.39
UPF3A-212ENST00000619079 ZCRB1Q8TBF4 217 aaKnown RBP12.6□□□□□ -0.39
UPF3A-212ENST00000619079 CHMP4AQ9BY43 222 aa12.6□□□□□ -0.39
UPF3A-212ENST00000619079 MYO1CO00159 1063 aa12.59□□□□□ -0.39
UPF3A-212ENST00000619079 HIP1O00291 1037 aa12.59□□□□□ -0.39
UPF3A-212ENST00000619079 ONECUT3O60422 494 aaPredicted RBP12.59□□□□□ -0.39
UPF3A-212ENST00000619079 ETF1P62495 437 aaKnown RBP12.59□□□□□ -0.39
UPF3A-212ENST00000619079 POLA2Q14181 598 aa12.59□□□□□ -0.39
UPF3A-212ENST00000619079 CCDC73Q6ZRK6 1079 aa12.59□□□□□ -0.39
UPF3A-212ENST00000619079 CCDC191Q8NCU4 936 aa12.59□□□□□ -0.39
UPF3A-212ENST00000619079 EXOC4Q96A65 974 aa12.59□□□□□ -0.39
UPF3A-212ENST00000619079 GEMIN8Q9NWZ8 242 aaKnown RBP12.59□□□□□ -0.39
UPF3A-212ENST00000619079 KINO60870 393 aaKnown RBP12.59□□□□□ -0.39
UPF3A-212ENST00000619079 PLEKHO1Q53GL0 409 aaPredicted RBP12.59□□□□□ -0.39
UPF3A-212ENST00000619079 HOMER1Q86YM7 354 aa12.59□□□□□ -0.39
UPF3A-212ENST00000619079 DHX40Q8IX18 779 aaKnown RBP12.59□□□□□ -0.39
UPF3A-212ENST00000619079 GPATCH3Q96I76 525 aa12.59□□□□□ -0.39
UPF3A-212ENST00000619079 DISP2A7MBM2 1401 aa12.58□□□□□ -0.39
UPF3A-212ENST00000619079 PTH1RQ03431 593 aa12.58□□□□□ -0.4
UPF3A-212ENST00000619079 LRRFIP1Q32MZ4 808 aaKnown RBP12.58□□□□□ -0.4
UPF3A-212ENST00000619079 KRT27Q7Z3Y8 459 aa12.58□□□□□ -0.4
UPF3A-212ENST00000619079 SMARCE1Q969G3 411 aa12.58□□□□□ -0.4
UPF3A-212ENST00000619079 DNAI1Q9UI46 699 aa12.58□□□□□ -0.4
UPF3A-212ENST00000619079 OVOS2A0A0G2JMS6 1433 aa12.58□□□□□ -0.4
UPF3A-212ENST00000619079 NCAPD2Q15021 1401 aa12.58□□□□□ -0.4
UPF3A-212ENST00000619079 TADA3O75528 432 aa12.58□□□□□ -0.4
UPF3A-212ENST00000619079 OAS2P29728 719 aaKnown RBP12.58□□□□□ -0.4
UPF3A-212ENST00000619079 NOP2P46087 812 aaKnown RBP12.58□□□□□ -0.4
UPF3A-212ENST00000619079 AMOTQ4VCS5 1084 aa12.58□□□□□ -0.4
UPF3A-212ENST00000619079 FAM182BQ5T319 152 aa12.58□□□□□ -0.4
UPF3A-212ENST00000619079 CREB3L3Q68CJ9 461 aa12.58□□□□□ -0.4
UPF3A-212ENST00000619079 BLOC1S2Q6QNY1 142 aa12.58□□□□□ -0.4
UPF3A-212ENST00000619079 IQUBQ8NA54 791 aa12.58□□□□□ -0.4
UPF3A-212ENST00000619079 FBXO18Q8NFZ0 1043 aa12.58□□□□□ -0.4
UPF3A-212ENST00000619079 USP44Q9H0E7 712 aa12.58□□□□□ -0.4
UPF3A-212ENST00000619079 EP400Q96L91 3159 aa12.57□□□□□ -0.4
UPF3A-212ENST00000619079 RGPD1P0DJD0 1748 aa12.57□□□□□ -0.4
UPF3A-212ENST00000619079 IVLP07476 585 aa12.57□□□□□ -0.4
UPF3A-212ENST00000619079 RESTQ13127 1097 aa12.57□□□□□ -0.4
UPF3A-212ENST00000619079 SMC1AQ14683 1233 aaKnown RBP12.57□□□□□ -0.4
UPF3A-212ENST00000619079 C1orf141Q5JVX7 400 aa12.57□□□□□ -0.4
UPF3A-212ENST00000619079 ATL3Q6DD88 541 aa12.57□□□□□ -0.4
UPF3A-212ENST00000619079 ZNF530Q6P9A1 599 aaPredicted RBP12.57□□□□□ -0.4
UPF3A-212ENST00000619079 BRMS1Q9HCU9 246 aa12.57□□□□□ -0.4
UPF3A-212ENST00000619079 PCDH11XQ9BZA7 1347 aa12.57□□□□□ -0.4
UPF3A-212ENST00000619079 PCDH11YQ9BZA8 1340 aa12.57□□□□□ -0.4
UPF3A-212ENST00000619079 PPP1R42Q7Z4L9 355 aa12.57□□□□□ -0.4
UPF3A-212ENST00000619079 GPR161Q8N6U8 529 aaKnown RBP12.57□□□□□ -0.4
UPF3A-212ENST00000619079 RGS22Q8NE09 1264 aa12.57□□□□□ -0.4
UPF3A-212ENST00000619079 RBM8AQ9Y5S9 174 aaKnown RBP12.57□□□□□ -0.4
UPF3A-212ENST00000619079 TNS2Q63HR2 1409 aa12.57□□□□□ -0.4
UPF3A-212ENST00000619079 DHX16O60231 1041 aaKnown RBP12.56□□□□□ -0.4
UPF3A-212ENST00000619079 JAKMIP3Q5VZ66 844 aa12.56□□□□□ -0.4
UPF3A-212ENST00000619079 SRLQ86TD4 932 aa12.56□□□□□ -0.4
UPF3A-212ENST00000619079 TEX2Q8IWB9 1127 aa12.56□□□□□ -0.4
UPF3A-212ENST00000619079 C10orf67Q8IYJ2 551 aa12.56□□□□□ -0.4
UPF3A-212ENST00000619079 EVI5LQ96CN4 794 aa12.56□□□□□ -0.4
UPF3A-212ENST00000619079 BPIFA3Q9BQP9 254 aa12.56□□□□□ -0.4
UPF3A-212ENST00000619079 ADCY9O60503 1353 aa12.56□□□□□ -0.4
UPF3A-212ENST00000619079 H3BQV1 296 aa12.56□□□□□ -0.4
UPF3A-212ENST00000619079 TBC1D8O95759 1140 aa12.56□□□□□ -0.4
UPF3A-212ENST00000619079 ST5P78524 1137 aa12.56□□□□□ -0.4
UPF3A-212ENST00000619079 FAM160A1Q05DH4 1040 aa12.56□□□□□ -0.4
UPF3A-212ENST00000619079 ZRSR1Q15695 479 aaKnown RBP12.56□□□□□ -0.4
UPF3A-212ENST00000619079 IFFO2Q5TF58 517 aa12.56□□□□□ -0.4
UPF3A-212ENST00000619079 ICE2Q659A1 982 aa12.56□□□□□ -0.4
UPF3A-212ENST00000619079 NBPF11Q86T75 865 aa12.56□□□□□ -0.4
UPF3A-212ENST00000619079 CCAR1Q8IX12 1150 aaKnown RBP12.56□□□□□ -0.4
UPF3A-212ENST00000619079 AOPEPQ8N6M6 819 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms