RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 ZSWIM6Q9HCJ5 1215 aa17.06■□□□□ 0.32
SHROOM1-208ENST00000617339 CASP7P55210 303 aa17.06■□□□□ 0.32
SHROOM1-208ENST00000617339 CCDC82Q8N4S0 544 aa17.06■□□□□ 0.32
SHROOM1-208ENST00000617339 INCENPQ9NQS7 918 aa17.06■□□□□ 0.32
SHROOM1-208ENST00000617339 WTIPA6NIX2 430 aaPredicted RBP17.05■□□□□ 0.32
SHROOM1-208ENST00000617339 RIOK3O14730 519 aaKnown RBP17.05■□□□□ 0.32
SHROOM1-208ENST00000617339 ZBTB22O15209 634 aa17.05■□□□□ 0.32
SHROOM1-208ENST00000617339 PDE4CQ08493 712 aa17.05■□□□□ 0.32
SHROOM1-208ENST00000617339 CHAF1AQ13111 956 aaPredicted RBP17.05■□□□□ 0.32
SHROOM1-208ENST00000617339 UTYO14607 1347 aa17.05■□□□□ 0.32
SHROOM1-208ENST00000617339 SLIT3O75094 1523 aa17.05■□□□□ 0.32
SHROOM1-208ENST00000617339 CKAP2LQ8IYA6 745 aa17.04■□□□□ 0.32
SHROOM1-208ENST00000617339 KBTBD3Q8NAB2 608 aa17.04■□□□□ 0.32
SHROOM1-208ENST00000617339 PXDNLA1KZ92 1463 aa17.04■□□□□ 0.32
SHROOM1-208ENST00000617339 F13A1P00488 732 aa17.04■□□□□ 0.32
SHROOM1-208ENST00000617339 RRP12Q5JTH9 1297 aaKnown RBP17.04■□□□□ 0.32
SHROOM1-208ENST00000617339 VGLL3A8MV65 326 aa17.04■□□□□ 0.32
SHROOM1-208ENST00000617339 DENND2AQ9ULE3 1009 aa17.04■□□□□ 0.32
SHROOM1-208ENST00000617339 CDK11BP21127 795 aaKnown RBP17.03■□□□□ 0.32
SHROOM1-208ENST00000617339 RPS6KB1P23443 525 aa17.03■□□□□ 0.32
SHROOM1-208ENST00000617339 OSBP2Q969R2 916 aa17.03■□□□□ 0.32
SHROOM1-208ENST00000617339 INTS4Q96HW7 963 aaKnown RBP17.03■□□□□ 0.32
SHROOM1-208ENST00000617339 HAUS7Q99871 368 aa17.03■□□□□ 0.32
SHROOM1-208ENST00000617339 ST3GAL1Q11201 340 aa17.03■□□□□ 0.32
SHROOM1-208ENST00000617339 PTF1AQ7RTS3 328 aa17.03■□□□□ 0.32
SHROOM1-208ENST00000617339 GJB4Q9NTQ9 266 aa17.03■□□□□ 0.32
SHROOM1-208ENST00000617339 M0R2C6 588 aa17.03■□□□□ 0.32
SHROOM1-208ENST00000617339 RABL6Q3YEC7 729 aaPredicted RBP17.03■□□□□ 0.32
SHROOM1-208ENST00000617339 STOX1Q6ZVD7 989 aa17.03■□□□□ 0.32
SHROOM1-208ENST00000617339 GTPBP4Q9BZE4 634 aaKnown RBP17.03■□□□□ 0.32
SHROOM1-208ENST00000617339 FTOQ9C0B1 505 aaKnown RBP eCLIP17.03■□□□□ 0.32
SHROOM1-208ENST00000617339 PYCARDQ9ULZ3 195 aa17.03■□□□□ 0.32
SHROOM1-208ENST00000617339 SLC9C2Q5TAH2 1124 aa17.02■□□□□ 0.32
SHROOM1-208ENST00000617339 ABCF2Q9UG63 623 aa17.02■□□□□ 0.32
SHROOM1-208ENST00000617339 COL15A1P39059 1388 aa17.02■□□□□ 0.32
SHROOM1-208ENST00000617339 NLRP10Q86W26 655 aa17.02■□□□□ 0.31
SHROOM1-208ENST00000617339 PUS7LQ9H0K6 701 aaKnown RBP17.02■□□□□ 0.31
SHROOM1-208ENST00000617339 WWC3Q9ULE0 1092 aa17.02■□□□□ 0.31
SHROOM1-208ENST00000617339 NIP7Q9Y221 180 aaKnown RBP eCLIP17.02■□□□□ 0.31
SHROOM1-208ENST00000617339 ANKRD18BA2A2Z9 1011 aa17.01■□□□□ 0.31
SHROOM1-208ENST00000617339 TOB2Q14106 344 aaPredicted RBP17.01■□□□□ 0.31
SHROOM1-208ENST00000617339 MTMR6Q9Y217 621 aa17.01■□□□□ 0.31
SHROOM1-208ENST00000617339 OVOS2A0A0G2JMS6 1433 aa17.01■□□□□ 0.31
SHROOM1-208ENST00000617339 A0A087WWV3 80 aa17.01■□□□□ 0.31
SHROOM1-208ENST00000617339 HSPD1P10809 573 aaKnown RBP17.01■□□□□ 0.31
SHROOM1-208ENST00000617339 BICD2Q8TD16 824 aa17.01■□□□□ 0.31
SHROOM1-208ENST00000617339 ERCC4Q92889 916 aaPredicted RBP17.01■□□□□ 0.31
SHROOM1-208ENST00000617339 COL5A2P05997 1499 aaPredicted RBP17■□□□□ 0.31
SHROOM1-208ENST00000617339 PHKA1P46020 1223 aa17■□□□□ 0.31
SHROOM1-208ENST00000617339 MTMR7Q9Y216 660 aa17■□□□□ 0.31
SHROOM1-208ENST00000617339 ZNF609O15014 1411 aa17■□□□□ 0.31
SHROOM1-208ENST00000617339 LRRC37A3O60309 1634 aa17■□□□□ 0.31
SHROOM1-208ENST00000617339 TTLL11Q8NHH1 800 aa17■□□□□ 0.31
SHROOM1-208ENST00000617339 GIGYF2Q6Y7W6 1299 aaKnown RBP17■□□□□ 0.31
SHROOM1-208ENST00000617339 MIGA1Q8NAN2 632 aa17■□□□□ 0.31
SHROOM1-208ENST00000617339 CYP19A1P11511 503 aaPredicted RBP16.99■□□□□ 0.31
SHROOM1-208ENST00000617339 USP42Q9H9J4 1324 aaKnown RBP16.99■□□□□ 0.31
SHROOM1-208ENST00000617339 RNF113AO15541 343 aaKnown RBP16.99■□□□□ 0.31
SHROOM1-208ENST00000617339 LETM1O95202 739 aaPredicted RBP16.99■□□□□ 0.31
SHROOM1-208ENST00000617339 POLR3DP05423 398 aaPredicted RBP16.98■□□□□ 0.31
SHROOM1-208ENST00000617339 NAA30Q147X3 362 aaPredicted RBP16.98■□□□□ 0.31
SHROOM1-208ENST00000617339 ZBTB38Q8NAP3 1195 aaPredicted RBP16.98■□□□□ 0.31
SHROOM1-208ENST00000617339 MAST3O60307 1309 aa16.98■□□□□ 0.31
SHROOM1-208ENST00000617339 CPDO75976 1380 aa16.98■□□□□ 0.31
SHROOM1-208ENST00000617339 RPAP1Q9BWH6 1393 aaPredicted RBP16.98■□□□□ 0.31
SHROOM1-208ENST00000617339 KLHL34Q8N239 644 aa16.98■□□□□ 0.31
SHROOM1-208ENST00000617339 ZSCAN31Q96LW9 406 aaPredicted RBP16.98■□□□□ 0.31
SHROOM1-208ENST00000617339 STRCP1A6NGW2 1772 aa16.98■□□□□ 0.31
SHROOM1-208ENST00000617339 MAP3K15Q6ZN16 1313 aa16.98■□□□□ 0.31
SHROOM1-208ENST00000617339 SUSD4Q5VX71 490 aa16.98■□□□□ 0.31
SHROOM1-208ENST00000617339 MYL10Q9BUA6 226 aa16.98■□□□□ 0.31
SHROOM1-208ENST00000617339 U3KPZ7 1027 aaPredicted RBP16.98■□□□□ 0.31
SHROOM1-208ENST00000617339 KIF20AO95235 890 aa16.97■□□□□ 0.31
SHROOM1-208ENST00000617339 DRC7Q8IY82 874 aa16.97■□□□□ 0.31
SHROOM1-208ENST00000617339 ZKSCAN3Q9BRR0 538 aa16.97■□□□□ 0.31
SHROOM1-208ENST00000617339 ISCA1Q9BUE6 129 aa16.97■□□□□ 0.31
SHROOM1-208ENST00000617339 SH2B1Q9NRF2 756 aaPredicted RBP16.97■□□□□ 0.31
SHROOM1-208ENST00000617339 E7EWF7 191 aa16.97■□□□□ 0.31
SHROOM1-208ENST00000617339 CRKLP46109 303 aaKnown RBP16.97■□□□□ 0.31
SHROOM1-208ENST00000617339 ZNF592Q92610 1267 aa16.97■□□□□ 0.31
SHROOM1-208ENST00000617339 FGAP02671 866 aa16.96■□□□□ 0.31
SHROOM1-208ENST00000617339 RALYLQ86SE5 291 aaKnown RBP16.96■□□□□ 0.31
SHROOM1-208ENST00000617339 SPATA32Q96LK8 384 aa16.96■□□□□ 0.31
SHROOM1-208ENST00000617339 C16orf45Q96MC5 204 aaPredicted RBP16.96■□□□□ 0.31
SHROOM1-208ENST00000617339 EP400Q96L91 3159 aa16.96■□□□□ 0.31
SHROOM1-208ENST00000617339 MCAMP43121 646 aa16.96■□□□□ 0.31
SHROOM1-208ENST00000617339 BCAMP50895 628 aa16.96■□□□□ 0.31
SHROOM1-208ENST00000617339 SCRN1Q12765 414 aa16.96■□□□□ 0.31
SHROOM1-208ENST00000617339 ATP6V1DQ9Y5K8 247 aa16.96■□□□□ 0.31
SHROOM1-208ENST00000617339 SRCAPQ6ZRS2 3230 aa16.96■□□□□ 0.31
SHROOM1-208ENST00000617339 CCDC183Q5T5S1 534 aa16.96■□□□□ 0.31
SHROOM1-208ENST00000617339 MARCH10Q8NA82 808 aaPredicted RBP16.96■□□□□ 0.31
SHROOM1-208ENST00000617339 ZNF219Q9P2Y4 722 aaPredicted RBP16.96■□□□□ 0.31
SHROOM1-208ENST00000617339 ATP2B1P20020 1258 aa16.95■□□□□ 0.3
SHROOM1-208ENST00000617339 CTSWP56202 376 aa16.95■□□□□ 0.3
SHROOM1-208ENST00000617339 TTC6Q86TZ1 520 aa16.95■□□□□ 0.3
SHROOM1-208ENST00000617339 AKAP2Q9Y2D5 859 aa16.95■□□□□ 0.3
SHROOM1-208ENST00000617339 LOC102724428A0A0B4J2F2 783 aa16.95■□□□□ 0.3
SHROOM1-208ENST00000617339 G3V3G9 751 aa16.95■□□□□ 0.3
SHROOM1-208ENST00000617339 CPLX1O14810 134 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms