RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 USP17L8P0C7I0 530 aa24.21■■□□□ 1.47
CDX1-202ENST00000616154 GCKRQ14397 625 aa24.21■■□□□ 1.47
CDX1-202ENST00000616154 FAM9BQ8IZU0 186 aa24.21■■□□□ 1.47
CDX1-202ENST00000616154 ZIC5Q96T25 663 aa24.21■■□□□ 1.47
CDX1-202ENST00000616154 FAM155AB1AL88 458 aaPredicted RBP24.2■■□□□ 1.46
CDX1-202ENST00000616154 CCT4P50991 539 aaKnown RBP24.2■■□□□ 1.46
CDX1-202ENST00000616154 SCARF1Q14162 830 aa24.2■■□□□ 1.46
CDX1-202ENST00000616154 ANGEL2Q5VTE6 544 aaKnown RBP24.2■■□□□ 1.46
CDX1-202ENST00000616154 MIER1Q8N108 512 aa24.2■■□□□ 1.46
CDX1-202ENST00000616154 CDCA5Q96FF9 252 aa24.2■■□□□ 1.46
CDX1-202ENST00000616154 MYOZ2Q9NPC6 264 aa24.2■■□□□ 1.46
CDX1-202ENST00000616154 ZNF521Q96K83 1311 aa24.2■■□□□ 1.46
CDX1-202ENST00000616154 IGHMBP2P38935 993 aaKnown RBP24.19■■□□□ 1.46
CDX1-202ENST00000616154 CASP7P55210 303 aa24.19■■□□□ 1.46
CDX1-202ENST00000616154 DNAAF4Q8WXU2 420 aa24.19■■□□□ 1.46
CDX1-202ENST00000616154 CCDC102AQ96A19 550 aa24.19■■□□□ 1.46
CDX1-202ENST00000616154 MYH16Q9H6N6 1097 aa24.19■■□□□ 1.46
CDX1-202ENST00000616154 PITPNM2Q9BZ72 1349 aa24.19■■□□□ 1.46
CDX1-202ENST00000616154 FKBP5Q13451 457 aaPredicted RBP24.18■■□□□ 1.46
CDX1-202ENST00000616154 LINS1Q8NG48 757 aa24.18■■□□□ 1.46
CDX1-202ENST00000616154 LEMD3Q9Y2U8 911 aa24.18■■□□□ 1.46
CDX1-202ENST00000616154 AKAP11Q9UKA4 1901 aa24.17■■□□□ 1.46
CDX1-202ENST00000616154 VAMP4O75379 141 aa24.17■■□□□ 1.46
CDX1-202ENST00000616154 COA1Q9GZY4 146 aa24.17■■□□□ 1.46
CDX1-202ENST00000616154 PAPPA2Q9BXP8 1791 aa24.17■■□□□ 1.46
CDX1-202ENST00000616154 CSF1RP07333 972 aa24.16■■□□□ 1.46
CDX1-202ENST00000616154 ITGA6P23229 1130 aa24.16■■□□□ 1.46
CDX1-202ENST00000616154 ZNF157P51786 506 aaPredicted RBP24.16■■□□□ 1.46
CDX1-202ENST00000616154 FAM161AQ3B820 660 aa24.16■■□□□ 1.46
CDX1-202ENST00000616154 DACT2Q5SW24 774 aa24.16■■□□□ 1.46
CDX1-202ENST00000616154 ANKRD2Q9GZV1 360 aa24.15■■□□□ 1.46
CDX1-202ENST00000616154 SPINK5Q9NQ38 1064 aaPredicted RBP24.15■■□□□ 1.46
CDX1-202ENST00000616154 A0A1B0GUL6 1792 aa24.15■■□□□ 1.46
CDX1-202ENST00000616154 MYO3BQ8WXR4 1341 aa24.15■■□□□ 1.46
CDX1-202ENST00000616154 CCER2I3L3R5 266 aa24.14■■□□□ 1.46
CDX1-202ENST00000616154 SLC10A3P09131 477 aa24.14■■□□□ 1.46
CDX1-202ENST00000616154 STRIP1Q5VSL9 837 aa24.14■■□□□ 1.46
CDX1-202ENST00000616154 ZNF804BA4D1E1 1349 aa24.14■■□□□ 1.45
CDX1-202ENST00000616154 FKBP1BP68106 108 aa24.13■■□□□ 1.45
CDX1-202ENST00000616154 KIF23Q02241 960 aaPredicted RBP24.13■■□□□ 1.45
CDX1-202ENST00000616154 EXOSC9Q06265 439 aaKnown RBP24.13■■□□□ 1.45
CDX1-202ENST00000616154 TXNRD3Q86VQ6 643 aa24.13■■□□□ 1.45
CDX1-202ENST00000616154 MPHOSPH8Q99549 860 aa24.13■■□□□ 1.45
CDX1-202ENST00000616154 SAGE1Q9NXZ1 904 aa24.13■■□□□ 1.45
CDX1-202ENST00000616154 SALL2Q9Y467 1007 aaPredicted RBP24.13■■□□□ 1.45
CDX1-202ENST00000616154 MXD3Q9BW11 206 aa24.12■■□□□ 1.45
CDX1-202ENST00000616154 MMP14P50281 582 aa24.11■■□□□ 1.45
CDX1-202ENST00000616154 OGFOD1Q8N543 542 aa24.11■■□□□ 1.45
CDX1-202ENST00000616154 FBXW7Q969H0 707 aa24.11■■□□□ 1.45
CDX1-202ENST00000616154 KLRK1P26718 216 aa24.1■■□□□ 1.45
CDX1-202ENST00000616154 NBPF9Q3BBW0 867 aa24.1■■□□□ 1.45
CDX1-202ENST00000616154 MCOLN1Q9GZU1 580 aa24.1■■□□□ 1.45
CDX1-202ENST00000616154 ANKRD18BA2A2Z9 1011 aa24.1■■□□□ 1.45
CDX1-202ENST00000616154 CHRNDQ07001 517 aa24.1■■□□□ 1.45
CDX1-202ENST00000616154 RASAL3Q86YV0 1011 aa24.1■■□□□ 1.45
CDX1-202ENST00000616154 CCDC85CA6NKD9 419 aa24.09■■□□□ 1.45
CDX1-202ENST00000616154 WNT10BO00744 389 aa24.08■■□□□ 1.44
CDX1-202ENST00000616154 KCNJ4P48050 445 aa24.08■■□□□ 1.44
CDX1-202ENST00000616154 FOXO4P98177 505 aa24.08■■□□□ 1.44
CDX1-202ENST00000616154 BEND3Q5T5X7 828 aa24.08■■□□□ 1.44
CDX1-202ENST00000616154 TTLL5Q6EMB2 1281 aa24.08■■□□□ 1.44
CDX1-202ENST00000616154 REM2Q8IYK8 340 aaPredicted RBP24.08■■□□□ 1.44
CDX1-202ENST00000616154 CSRNP1Q96S65 589 aa24.08■■□□□ 1.44
CDX1-202ENST00000616154 RNF186Q9NXI6 227 aa24.08■■□□□ 1.44
CDX1-202ENST00000616154 SCAF8Q9UPN6 1271 aaKnown RBP24.08■■□□□ 1.44
CDX1-202ENST00000616154 F6X3S4 739 aa24.07■■□□□ 1.44
CDX1-202ENST00000616154 DGKZQ13574 1117 aa24.07■■□□□ 1.44
CDX1-202ENST00000616154 IRS2Q9Y4H2 1338 aa24.07■■□□□ 1.44
CDX1-202ENST00000616154 IFIT5Q13325 482 aaKnown RBP24.06■■□□□ 1.44
CDX1-202ENST00000616154 TRPA1O75762 1119 aa24.05■■□□□ 1.44
CDX1-202ENST00000616154 SASH1O94885 1247 aa24.05■■□□□ 1.44
CDX1-202ENST00000616154 GTF2IP78347 998 aa24.05■■□□□ 1.44
CDX1-202ENST00000616154 ECM29Q5VYK3 1845 aa24.05■■□□□ 1.44
CDX1-202ENST00000616154 C15orf52Q6ZUT6 534 aaKnown RBP24.05■■□□□ 1.44
CDX1-202ENST00000616154 CD209Q9NNX6 404 aa24.05■■□□□ 1.44
CDX1-202ENST00000616154 HDAC9Q9UKV0 1011 aa24.05■■□□□ 1.44
CDX1-202ENST00000616154 PRAMEF18Q5VWM3 479 aa24.04■■□□□ 1.44
CDX1-202ENST00000616154 MOB2Q70IA6 237 aa24.04■■□□□ 1.44
CDX1-202ENST00000616154 KIAA0825Q8IV33 1275 aa24.04■■□□□ 1.44
CDX1-202ENST00000616154 ZBED3Q96IU2 234 aaPredicted RBP24.04■■□□□ 1.44
CDX1-202ENST00000616154 RGS19P49795 217 aa24.03■■□□□ 1.44
CDX1-202ENST00000616154 APOBEC3FQ8IUX4 373 aaKnown RBP24.03■■□□□ 1.44
CDX1-202ENST00000616154 CHMP3Q9Y3E7 222 aa24.03■■□□□ 1.44
CDX1-202ENST00000616154 UBE2Q2LH0YL09 131 aa24.02■■□□□ 1.44
CDX1-202ENST00000616154 SNAP23O00161 211 aa24.02■■□□□ 1.44
CDX1-202ENST00000616154 GRM8O00222 908 aa24.02■■□□□ 1.44
CDX1-202ENST00000616154 TAF5LO75529 589 aa24.02■■□□□ 1.44
CDX1-202ENST00000616154 NF2P35240 595 aa24.02■■□□□ 1.44
CDX1-202ENST00000616154 EPHA10Q5JZY3 1008 aa24.01■■□□□ 1.43
CDX1-202ENST00000616154 LMBR1LQ6UX01 489 aa24.01■■□□□ 1.43
CDX1-202ENST00000616154 HELBQ8NG08 1087 aaPredicted RBP24.01■■□□□ 1.43
CDX1-202ENST00000616154 COL1A1P02452 1464 aaPredicted RBP24.01■■□□□ 1.43
CDX1-202ENST00000616154 E9PSI1 815 aa24■■□□□ 1.43
CDX1-202ENST00000616154 TTLL12Q14166 644 aaPredicted RBP24■■□□□ 1.43
CDX1-202ENST00000616154 ALDH1L1O75891 902 aa23.99■■□□□ 1.43
CDX1-202ENST00000616154 IL1R1P14778 569 aa23.99■■□□□ 1.43
CDX1-202ENST00000616154 CCDC57Q2TAC2 916 aa23.99■■□□□ 1.43
CDX1-202ENST00000616154 ZNF804AQ7Z570 1209 aa23.99■■□□□ 1.43
CDX1-202ENST00000616154 CERS5Q8N5B7 392 aa23.99■■□□□ 1.43
CDX1-202ENST00000616154 MTMR14Q8NCE2 650 aa23.98■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms