RNA–Protein interactions for RNA: ENST00000612856.4

FAM3A-221, Transcript of family with sequence similarity 3 member A, humanhuman

TSL 2

Gene FAM3A, Length 3,995 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FAM3A-221ENST00000612856 CEP170BQ9Y4F5 1589 aaPredicted RBP12.68□□□□□ -0.38
FAM3A-221ENST00000612856 H0YIN7 160 aa12.68□□□□□ -0.38
FAM3A-221ENST00000612856 MCM5P33992 734 aa12.68□□□□□ -0.38
FAM3A-221ENST00000612856 RABEP1Q15276 862 aa12.68□□□□□ -0.38
FAM3A-221ENST00000612856 ZNF444Q8N0Y2 327 aaPredicted RBP12.68□□□□□ -0.38
FAM3A-221ENST00000612856 PDRG1Q9NUG6 133 aa12.68□□□□□ -0.38
FAM3A-221ENST00000612856 REREQ9P2R6 1566 aa12.67□□□□□ -0.38
FAM3A-221ENST00000612856 HIP1O00291 1037 aa12.67□□□□□ -0.38
FAM3A-221ENST00000612856 IL15P40933 162 aaPredicted RBP12.67□□□□□ -0.38
FAM3A-221ENST00000612856 HS1BP3Q53T59 392 aa12.67□□□□□ -0.38
FAM3A-221ENST00000612856 NAA16Q6N069 864 aaPredicted RBP12.67□□□□□ -0.38
FAM3A-221ENST00000612856 MAGEB6Q8N7X4 407 aa12.67□□□□□ -0.38
FAM3A-221ENST00000612856 ZFP91Q96JP5 570 aaPredicted RBP12.67□□□□□ -0.38
FAM3A-221ENST00000612856 ZKSCAN3Q9BRR0 538 aa12.67□□□□□ -0.38
FAM3A-221ENST00000612856 SAP30BPQ9UHR5 308 aaKnown RBP12.67□□□□□ -0.38
FAM3A-221ENST00000612856 MMP10P09238 476 aa12.67□□□□□ -0.38
FAM3A-221ENST00000612856 TCIRG1Q13488 830 aa12.67□□□□□ -0.38
FAM3A-221ENST00000612856 ZBTB9Q96C00 473 aa12.67□□□□□ -0.38
FAM3A-221ENST00000612856 TMEM63CQ9P1W3 806 aa12.67□□□□□ -0.38
FAM3A-221ENST00000612856 USP31Q70CQ4 1352 aa12.67□□□□□ -0.38
FAM3A-221ENST00000612856 TSPY2A6NKD2 308 aa12.67□□□□□ -0.38
FAM3A-221ENST00000612856 ZYXQ15942 572 aaKnown RBP12.67□□□□□ -0.38
FAM3A-221ENST00000612856 ARHGAP27Q6ZUM4 889 aa12.67□□□□□ -0.38
FAM3A-221ENST00000612856 PRIMPOLQ96LW4 560 aa12.67□□□□□ -0.38
FAM3A-221ENST00000612856 NYXQ9GZU5 481 aa12.67□□□□□ -0.38
FAM3A-221ENST00000612856 ZHX3Q9H4I2 956 aa12.67□□□□□ -0.38
FAM3A-221ENST00000612856 NEURL1BA8MQ27 555 aa12.66□□□□□ -0.38
FAM3A-221ENST00000612856 IFIT3O14879 490 aaKnown RBP12.66□□□□□ -0.38
FAM3A-221ENST00000612856 TPD52L1Q16890 204 aaPredicted RBP12.66□□□□□ -0.38
FAM3A-221ENST00000612856 DPP8Q6V1X1 898 aaPredicted RBP12.66□□□□□ -0.38
FAM3A-221ENST00000612856 GREM2Q9H772 168 aa12.66□□□□□ -0.38
FAM3A-221ENST00000612856 RIMS1Q86UR5 1692 aaKnown RBP12.66□□□□□ -0.38
FAM3A-221ENST00000612856 DHX8Q14562 1220 aaKnown RBP12.66□□□□□ -0.38
FAM3A-221ENST00000612856 NECAB1Q8N987 351 aa12.66□□□□□ -0.38
FAM3A-221ENST00000612856 SNX21Q969T3 373 aa12.66□□□□□ -0.38
FAM3A-221ENST00000612856 SSBP05455 408 aaKnown RBP eCLIP12.66□□□□□ -0.38
FAM3A-221ENST00000612856 SLC4A4Q9Y6R1 1079 aa12.66□□□□□ -0.38
FAM3A-221ENST00000612856 ADGRB2O60241 1585 aa12.66□□□□□ -0.38
FAM3A-221ENST00000612856 C1orf167Q5SNV9 1468 aa12.65□□□□□ -0.38
FAM3A-221ENST00000612856 LARP1BQ659C4 914 aaKnown RBP12.65□□□□□ -0.38
FAM3A-221ENST00000612856 KIAA0825Q8IV33 1275 aa12.65□□□□□ -0.38
FAM3A-221ENST00000612856 FER1L4A9Z1Z3 1794 aa12.65□□□□□ -0.38
FAM3A-221ENST00000612856 SCNN1DP51172 638 aa12.65□□□□□ -0.38
FAM3A-221ENST00000612856 RPS8P62241 208 aaKnown RBP12.65□□□□□ -0.38
FAM3A-221ENST00000612856 R3HDM1Q15032 1099 aaKnown RBP12.65□□□□□ -0.38
FAM3A-221ENST00000612856 LMBRD1Q9NUN5 540 aa12.65□□□□□ -0.38
FAM3A-221ENST00000612856 RIOK3O14730 519 aaKnown RBP12.65□□□□□ -0.38
FAM3A-221ENST00000612856 GTF2IP78347 998 aa12.65□□□□□ -0.38
FAM3A-221ENST00000612856 CCDC191Q8NCU4 936 aa12.65□□□□□ -0.38
FAM3A-221ENST00000612856 ATG3Q9NT62 314 aa12.65□□□□□ -0.38
FAM3A-221ENST00000612856 EYA2O00167 538 aa12.64□□□□□ -0.39
FAM3A-221ENST00000612856 UTP14CQ5TAP6 766 aaKnown RBP12.64□□□□□ -0.39
FAM3A-221ENST00000612856 PI16Q6UXB8 463 aa12.64□□□□□ -0.39
FAM3A-221ENST00000612856 CCDC112Q8NEF3 446 aa12.64□□□□□ -0.39
FAM3A-221ENST00000612856 MCM9Q9NXL9 1143 aa12.64□□□□□ -0.39
FAM3A-221ENST00000612856 CRB1P82279 1406 aa12.64□□□□□ -0.39
FAM3A-221ENST00000612856 ZNF445P59923 1031 aa12.64□□□□□ -0.39
FAM3A-221ENST00000612856 EAPPQ56P03 285 aaPredicted RBP12.64□□□□□ -0.39
FAM3A-221ENST00000612856 TAF3Q5VWG9 929 aa12.64□□□□□ -0.39
FAM3A-221ENST00000612856 MARCH10Q8NA82 808 aaPredicted RBP12.64□□□□□ -0.39
FAM3A-221ENST00000612856 SDF4Q9BRK5 362 aa12.64□□□□□ -0.39
FAM3A-221ENST00000612856 ITSN1Q15811 1721 aa12.64□□□□□ -0.39
FAM3A-221ENST00000612856 PDE8AO60658 829 aa12.64□□□□□ -0.39
FAM3A-221ENST00000612856 U3KPZ7 1027 aaPredicted RBP12.64□□□□□ -0.39
FAM3A-221ENST00000612856 C3P01024 1663 aa12.64□□□□□ -0.39
FAM3A-221ENST00000612856 BCAMP50895 628 aa12.63□□□□□ -0.39
FAM3A-221ENST00000612856 RBM6P78332 1123 aaKnown RBP12.63□□□□□ -0.39
FAM3A-221ENST00000612856 C2CD5Q86YS7 1000 aa12.63□□□□□ -0.39
FAM3A-221ENST00000612856 PAG1Q9NWQ8 432 aa12.63□□□□□ -0.39
FAM3A-221ENST00000612856 CTNNA3Q9UI47 895 aa12.63□□□□□ -0.39
FAM3A-221ENST00000612856 PTCH1Q13635 1447 aa12.63□□□□□ -0.39
FAM3A-221ENST00000612856 PALLDQ8WX93 1383 aa12.63□□□□□ -0.39
FAM3A-221ENST00000612856 PPIP5K2O43314 1243 aa12.63□□□□□ -0.39
FAM3A-221ENST00000612856 BRPF1P55201 1214 aaPredicted RBP12.63□□□□□ -0.39
FAM3A-221ENST00000612856 XAGE2Q96GT9 111 aa12.63□□□□□ -0.39
FAM3A-221ENST00000612856 TRIM5Q9C035 493 aa12.63□□□□□ -0.39
FAM3A-221ENST00000612856 RGPD8O14715 1765 aaPredicted RBP12.63□□□□□ -0.39
FAM3A-221ENST00000612856 SERPINB2P05120 415 aa12.62□□□□□ -0.39
FAM3A-221ENST00000612856 NMIQ13287 307 aaPredicted RBP12.62□□□□□ -0.39
FAM3A-221ENST00000612856 ERFEQ4G0M1 354 aa12.62□□□□□ -0.39
FAM3A-221ENST00000612856 BRF1Q92994 677 aa12.62□□□□□ -0.39
FAM3A-221ENST00000612856 UIMC1Q96RL1 719 aa12.62□□□□□ -0.39
FAM3A-221ENST00000612856 GTF2F1P35269 517 aaKnown RBP eCLIP12.62□□□□□ -0.39
FAM3A-221ENST00000612856 GPT2Q8TD30 523 aa12.62□□□□□ -0.39
FAM3A-221ENST00000612856 EVI5LQ96CN4 794 aa12.62□□□□□ -0.39
FAM3A-221ENST00000612856 TIGD1Q96MW7 591 aa12.62□□□□□ -0.39
FAM3A-221ENST00000612856 BECN2A8MW95 431 aa12.62□□□□□ -0.39
FAM3A-221ENST00000612856 SKIDA1Q1XH10 827 aa12.62□□□□□ -0.39
FAM3A-221ENST00000612856 TRIM22Q8IYM9 498 aa12.62□□□□□ -0.39
FAM3A-221ENST00000612856 FAM227BQ96M60 508 aa12.62□□□□□ -0.39
FAM3A-221ENST00000612856 AATFQ9NY61 560 aaKnown RBP eCLIP12.62□□□□□ -0.39
FAM3A-221ENST00000612856 TXNRD1Q16881 649 aa12.62□□□□□ -0.39
FAM3A-221ENST00000612856 TMX1Q9H3N1 280 aa12.62□□□□□ -0.39
FAM3A-221ENST00000612856 DBNDD1Q9H9R9 158 aa12.62□□□□□ -0.39
FAM3A-221ENST00000612856 BAG3O95817 575 aa12.61□□□□□ -0.39
FAM3A-221ENST00000612856 HIBADHP31937 336 aaKnown RBP12.61□□□□□ -0.39
FAM3A-221ENST00000612856 ZAP70P43403 619 aa12.61□□□□□ -0.39
FAM3A-221ENST00000612856 RBM25P49756 843 aaKnown RBP12.61□□□□□ -0.39
FAM3A-221ENST00000612856 TFIP11Q9UBB9 837 aaKnown RBP12.61□□□□□ -0.39
FAM3A-221ENST00000612856 GGA1Q9UJY5 639 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms