RNA–Protein interactions for RNA: ENST00000610828.4

NEK3-205, Transcript of NIMA related kinase 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene NEK3, Length 2,396 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-205ENST00000610828 VGLL2Q8N8G2 317 aa16.18■□□□□ 0.18
NEK3-205ENST00000610828 LRRC2Q9BYS8 371 aa16.18■□□□□ 0.18
NEK3-205ENST00000610828 NWD2Q9ULI1 1742 aa16.18■□□□□ 0.18
NEK3-205ENST00000610828 PDE8BO95263 885 aa16.18■□□□□ 0.18
NEK3-205ENST00000610828 ZFYP08048 801 aaPredicted RBP16.18■□□□□ 0.18
NEK3-205ENST00000610828 MCAMP43121 646 aa16.18■□□□□ 0.18
NEK3-205ENST00000610828 A0A0G2JLW4 131 aa16.17■□□□□ 0.18
NEK3-205ENST00000610828 SYCE3A1L190 88 aa16.17■□□□□ 0.18
NEK3-205ENST00000610828 HMGB1P09429 215 aaKnown RBP16.17■□□□□ 0.18
NEK3-205ENST00000610828 FAM98CQ17RN3 349 aaKnown RBP16.17■□□□□ 0.18
NEK3-205ENST00000610828 UTP14AQ9BVJ6 771 aaKnown RBP16.17■□□□□ 0.18
NEK3-205ENST00000610828 CAMTA2O94983 1202 aa16.16■□□□□ 0.18
NEK3-205ENST00000610828 NASPP49321 788 aaPredicted RBP16.16■□□□□ 0.18
NEK3-205ENST00000610828 BRF1Q92994 677 aa16.16■□□□□ 0.18
NEK3-205ENST00000610828 ABCC12Q96J65 1359 aa16.16■□□□□ 0.18
NEK3-205ENST00000610828 PDCP20941 246 aa16.16■□□□□ 0.18
NEK3-205ENST00000610828 TMEM87AQ8NBN3 555 aa16.16■□□□□ 0.18
NEK3-205ENST00000610828 AK7Q96M32 723 aa16.16■□□□□ 0.18
NEK3-205ENST00000610828 MYH14Q7Z406 1995 aaKnown RBP16.16■□□□□ 0.18
NEK3-205ENST00000610828 E7EWF7 191 aa16.15■□□□□ 0.18
NEK3-205ENST00000610828 FIBPO43427 364 aa16.15■□□□□ 0.18
NEK3-205ENST00000610828 TPRNQ4KMQ1 711 aa16.15■□□□□ 0.18
NEK3-205ENST00000610828 DHX32Q7L7V1 743 aaKnown RBP16.15■□□□□ 0.18
NEK3-205ENST00000610828 HELBQ8NG08 1087 aaPredicted RBP16.15■□□□□ 0.18
NEK3-205ENST00000610828 GTF3C6Q969F1 213 aa16.15■□□□□ 0.18
NEK3-205ENST00000610828 C8orf37Q96NL8 207 aa16.15■□□□□ 0.18
NEK3-205ENST00000610828 NIP7Q9Y221 180 aaKnown RBP eCLIP16.15■□□□□ 0.18
NEK3-205ENST00000610828 DNM1Q05193 864 aaKnown RBP16.15■□□□□ 0.18
NEK3-205ENST00000610828 TTLL5Q6EMB2 1281 aa16.15■□□□□ 0.18
NEK3-205ENST00000610828 APPBP2Q92624 585 aa16.15■□□□□ 0.18
NEK3-205ENST00000610828 SMARCC1Q92922 1105 aaPredicted RBP16.15■□□□□ 0.18
NEK3-205ENST00000610828 PUS7LQ9H0K6 701 aaKnown RBP16.15■□□□□ 0.18
NEK3-205ENST00000610828 LAMA4Q16363 1823 aa16.15■□□□□ 0.18
NEK3-205ENST00000610828 PARP10Q53GL7 1025 aa16.14■□□□□ 0.17
NEK3-205ENST00000610828 CDC37L1Q7L3B6 337 aa16.14■□□□□ 0.17
NEK3-205ENST00000610828 SYAP1Q96A49 352 aaPredicted RBP16.14■□□□□ 0.17
NEK3-205ENST00000610828 MPHOSPH8Q99549 860 aa16.14■□□□□ 0.17
NEK3-205ENST00000610828 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.14■□□□□ 0.17
NEK3-205ENST00000610828 MROH5Q6ZUA9 1318 aa16.14■□□□□ 0.17
NEK3-205ENST00000610828 PDIA4P13667 645 aaKnown RBP16.14■□□□□ 0.17
NEK3-205ENST00000610828 PUM3Q15397 648 aaKnown RBP16.14■□□□□ 0.17
NEK3-205ENST00000610828 CCDC102BQ68D86 513 aa16.14■□□□□ 0.17
NEK3-205ENST00000610828 LRSAM1Q6UWE0 723 aa16.14■□□□□ 0.17
NEK3-205ENST00000610828 FERMT3Q86UX7 667 aa16.14■□□□□ 0.17
NEK3-205ENST00000610828 NGLY1Q96IV0 654 aa16.14■□□□□ 0.17
NEK3-205ENST00000610828 PHKA1P46020 1223 aa16.13■□□□□ 0.17
NEK3-205ENST00000610828 LPIN2Q92539 896 aa16.13■□□□□ 0.17
NEK3-205ENST00000610828 ZNF512BQ96KM6 892 aaPredicted RBP16.13■□□□□ 0.17
NEK3-205ENST00000610828 SEC31BQ9NQW1 1179 aa16.13■□□□□ 0.17
NEK3-205ENST00000610828 AKAP11Q9UKA4 1901 aa16.13■□□□□ 0.17
NEK3-205ENST00000610828 CTNNA3Q9UI47 895 aa16.13■□□□□ 0.17
NEK3-205ENST00000610828 FOXP2O15409 715 aa16.12■□□□□ 0.17
NEK3-205ENST00000610828 JAK2O60674 1132 aa16.12■□□□□ 0.17
NEK3-205ENST00000610828 HAND2P61296 217 aa16.12■□□□□ 0.17
NEK3-205ENST00000610828 UBE2HP62256 183 aa16.12■□□□□ 0.17
NEK3-205ENST00000610828 EXOSC10Q01780 885 aaKnown RBP16.12■□□□□ 0.17
NEK3-205ENST00000610828 TTF1Q15361 905 aaPredicted RBP16.12■□□□□ 0.17
NEK3-205ENST00000610828 IMMTQ16891 758 aaKnown RBP16.12■□□□□ 0.17
NEK3-205ENST00000610828 CCDC152Q4G0S7 254 aa16.12■□□□□ 0.17
NEK3-205ENST00000610828 SLC9C2Q5TAH2 1124 aa16.12■□□□□ 0.17
NEK3-205ENST00000610828 CHST3Q7LGC8 479 aa16.12■□□□□ 0.17
NEK3-205ENST00000610828 ANP32BQ92688 251 aaKnown RBP16.12■□□□□ 0.17
NEK3-205ENST00000610828 RBSNQ9H1K0 784 aa16.12■□□□□ 0.17
NEK3-205ENST00000610828 RREB1Q92766 1687 aa16.12■□□□□ 0.17
NEK3-205ENST00000610828 MYH7P12883 1935 aa16.12■□□□□ 0.17
NEK3-205ENST00000610828 GPAA1O43292 621 aa16.12■□□□□ 0.17
NEK3-205ENST00000610828 IDH1O75874 414 aaKnown RBP16.12■□□□□ 0.17
NEK3-205ENST00000610828 NTSR2O95665 410 aa16.12■□□□□ 0.17
NEK3-205ENST00000610828 FGAP02671 866 aa16.12■□□□□ 0.17
NEK3-205ENST00000610828 APOBRQ0VD83 1088 aa16.12■□□□□ 0.17
NEK3-205ENST00000610828 SCRN1Q12765 414 aa16.12■□□□□ 0.17
NEK3-205ENST00000610828 CSPP1Q1MSJ5 1256 aa16.12■□□□□ 0.17
NEK3-205ENST00000610828 ZSCAN25Q6NSZ9 544 aa16.12■□□□□ 0.17
NEK3-205ENST00000610828 LRP5O75197 1615 aa16.12■□□□□ 0.17
NEK3-205ENST00000610828 UBAP1LF5GYI3 381 aa16.11■□□□□ 0.17
NEK3-205ENST00000610828 SNAP23O00161 211 aa16.11■□□□□ 0.17
NEK3-205ENST00000610828 FAM43AQ8N2R8 423 aa16.11■□□□□ 0.17
NEK3-205ENST00000610828 ZNF652Q9Y2D9 606 aa16.11■□□□□ 0.17
NEK3-205ENST00000610828 SLC5A1P13866 664 aa16.11■□□□□ 0.17
NEK3-205ENST00000610828 FGFR2P21802 821 aa16.11■□□□□ 0.17
NEK3-205ENST00000610828 ARID4AP29374 1257 aaPredicted RBP16.11■□□□□ 0.17
NEK3-205ENST00000610828 ADD2P35612 726 aa16.11■□□□□ 0.17
NEK3-205ENST00000610828 KCNQ4P56696 695 aa16.11■□□□□ 0.17
NEK3-205ENST00000610828 PIH1D3Q9NQM4 214 aaKnown RBP16.11■□□□□ 0.17
NEK3-205ENST00000610828 NAP1L2Q9ULW6 460 aaPredicted RBP16.11■□□□□ 0.17
NEK3-205ENST00000610828 CICQ96RK0 1608 aaPredicted RBP16.1■□□□□ 0.17
NEK3-205ENST00000610828 UQCRFS1P1P0C7P4 283 aa16.1■□□□□ 0.17
NEK3-205ENST00000610828 DDX11Q96FC9 970 aa16.1■□□□□ 0.17
NEK3-205ENST00000610828 AGXT2Q9BYV1 514 aa16.1■□□□□ 0.17
NEK3-205ENST00000610828 PFKFB2O60825 505 aa16.09■□□□□ 0.17
NEK3-205ENST00000610828 PHF14O94880 888 aa16.09■□□□□ 0.17
NEK3-205ENST00000610828 IGHMBP2P38935 993 aaKnown RBP16.09■□□□□ 0.17
NEK3-205ENST00000610828 VPS72Q15906 364 aa16.09■□□□□ 0.17
NEK3-205ENST00000610828 FAM173BQ6P4H8 233 aa16.09■□□□□ 0.17
NEK3-205ENST00000610828 LINC00116Q8NCU8 138 aa16.09■□□□□ 0.17
NEK3-205ENST00000610828 DDX60Q8IY21 1712 aaKnown RBP16.09■□□□□ 0.17
NEK3-205ENST00000610828 BCL9LQ86UU0 1499 aa16.09■□□□□ 0.17
NEK3-205ENST00000610828 KRT85P78386 507 aa16.09■□□□□ 0.17
NEK3-205ENST00000610828 CCT2P78371 535 aaKnown RBP16.08■□□□□ 0.17
NEK3-205ENST00000610828 FAM184AQ8NB25 1140 aa16.08■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms