RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 LRRC24Q50LG9 513 aa17.83■□□□□ 0.44
UPF1-204ENST00000596842 GTF2F1P35269 517 aaKnown RBP eCLIP17.83■□□□□ 0.44
UPF1-204ENST00000596842 PLA2G4DQ86XP0 818 aa17.83■□□□□ 0.44
UPF1-204ENST00000596842 CEP57L1Q8IYX8 460 aa17.82■□□□□ 0.44
UPF1-204ENST00000596842 MARCKSP29966 332 aaPredicted RBP17.82■□□□□ 0.44
UPF1-204ENST00000596842 LRRC8AQ8IWT6 810 aa17.82■□□□□ 0.44
UPF1-204ENST00000596842 FAM177A1Q8N128 213 aaPredicted RBP17.82■□□□□ 0.44
UPF1-204ENST00000596842 ZNF396Q96N95 335 aaPredicted RBP17.82■□□□□ 0.44
UPF1-204ENST00000596842 SNRPA1P09661 255 aaKnown RBP17.82■□□□□ 0.44
UPF1-204ENST00000596842 KBTBD3Q8NAB2 608 aa17.82■□□□□ 0.44
UPF1-204ENST00000596842 CACNA1FO60840 1977 aa17.82■□□□□ 0.44
UPF1-204ENST00000596842 TOPAZ1Q8N9V7 1692 aa17.81■□□□□ 0.44
UPF1-204ENST00000596842 E7EWF7 191 aa17.81■□□□□ 0.44
UPF1-204ENST00000596842 ZSCAN20P17040 1043 aaPredicted RBP17.81■□□□□ 0.44
UPF1-204ENST00000596842 COPRSQ9NQ92 184 aa17.81■□□□□ 0.44
UPF1-204ENST00000596842 TUBGCP6Q96RT7 1819 aa17.81■□□□□ 0.44
UPF1-204ENST00000596842 TTLL7Q6ZT98 887 aa17.81■□□□□ 0.44
UPF1-204ENST00000596842 TMC6Q7Z403 805 aa17.81■□□□□ 0.44
UPF1-204ENST00000596842 PUS3Q9BZE2 481 aaKnown RBP17.81■□□□□ 0.44
UPF1-204ENST00000596842 ANO10Q9NW15 660 aa17.81■□□□□ 0.44
UPF1-204ENST00000596842 SMTNL1A8MU46 457 aa17.8■□□□□ 0.44
UPF1-204ENST00000596842 CTDNEP1O95476 244 aa17.8■□□□□ 0.44
UPF1-204ENST00000596842 HOMER1Q86YM7 354 aa17.8■□□□□ 0.44
UPF1-204ENST00000596842 ZNF215Q9UL58 517 aaPredicted RBP17.8■□□□□ 0.44
UPF1-204ENST00000596842 SYNE3Q6ZMZ3 975 aa17.8■□□□□ 0.44
UPF1-204ENST00000596842 A1BGP04217 495 aa17.8■□□□□ 0.44
UPF1-204ENST00000596842 HSPD1P10809 573 aaKnown RBP17.8■□□□□ 0.44
UPF1-204ENST00000596842 LMOD1P29536 600 aaPredicted RBP17.8■□□□□ 0.44
UPF1-204ENST00000596842 PROSER2Q86WR7 435 aaPredicted RBP17.8■□□□□ 0.44
UPF1-204ENST00000596842 HAUS7Q99871 368 aa17.8■□□□□ 0.44
UPF1-204ENST00000596842 TMX1Q9H3N1 280 aa17.8■□□□□ 0.44
UPF1-204ENST00000596842 A0A0G2JS52 829 aa17.79■□□□□ 0.44
UPF1-204ENST00000596842 GOLGA8BA8MQT2 603 aa17.79■□□□□ 0.44
UPF1-204ENST00000596842 C8orf76Q96K31 380 aa17.79■□□□□ 0.44
UPF1-204ENST00000596842 PCDHA7Q9UN72 937 aa17.79■□□□□ 0.44
UPF1-204ENST00000596842 KLF18A0A0U1RQI7 1052 aa17.79■□□□□ 0.44
UPF1-204ENST00000596842 PI16Q6UXB8 463 aa17.79■□□□□ 0.44
UPF1-204ENST00000596842 IPO4Q8TEX9 1081 aaKnown RBP17.79■□□□□ 0.44
UPF1-204ENST00000596842 IFNKQ9P0W0 207 aa17.79■□□□□ 0.44
UPF1-204ENST00000596842 CLIC4Q9Y696 253 aa17.79■□□□□ 0.44
UPF1-204ENST00000596842 NDUFA8P51970 172 aa17.78■□□□□ 0.44
UPF1-204ENST00000596842 IQCB1Q15051 598 aa17.78■□□□□ 0.44
UPF1-204ENST00000596842 PFKFB2O60825 505 aa17.78■□□□□ 0.44
UPF1-204ENST00000596842 FAM160A1Q05DH4 1040 aa17.78■□□□□ 0.44
UPF1-204ENST00000596842 DPCR1Q3MIW9 517 aa17.78■□□□□ 0.44
UPF1-204ENST00000596842 ORC3Q9UBD5 711 aaPredicted RBP17.78■□□□□ 0.44
UPF1-204ENST00000596842 A0A1B0GUL7 405 aa17.78■□□□□ 0.44
UPF1-204ENST00000596842 PDIA3P30101 505 aaKnown RBP17.78■□□□□ 0.44
UPF1-204ENST00000596842 DMTNQ08495 405 aa17.78■□□□□ 0.44
UPF1-204ENST00000596842 RALYLQ86SE5 291 aaKnown RBP17.78■□□□□ 0.44
UPF1-204ENST00000596842 IFNL2Q8IZJ0 200 aa17.78■□□□□ 0.44
UPF1-204ENST00000596842 PHKG2P15735 406 aa17.77■□□□□ 0.44
UPF1-204ENST00000596842 RFX5P48382 616 aaPredicted RBP17.77■□□□□ 0.44
UPF1-204ENST00000596842 MRPS27Q92552 414 aaKnown RBP17.77■□□□□ 0.44
UPF1-204ENST00000596842 ELF2Q15723 593 aa17.77■□□□□ 0.44
UPF1-204ENST00000596842 TTC39AQ5SRH9 613 aa17.77■□□□□ 0.44
UPF1-204ENST00000596842 NAT10Q9H0A0 1025 aaKnown RBP17.77■□□□□ 0.44
UPF1-204ENST00000596842 ATP2B1P20020 1258 aa17.77■□□□□ 0.43
UPF1-204ENST00000596842 DHX37Q8IY37 1157 aaKnown RBP17.77■□□□□ 0.43
UPF1-204ENST00000596842 USPL1Q5W0Q7 1092 aa17.76■□□□□ 0.43
UPF1-204ENST00000596842 CCDC82Q8N4S0 544 aa17.76■□□□□ 0.43
UPF1-204ENST00000596842 ANKARQ7Z5J8 1434 aa17.76■□□□□ 0.43
UPF1-204ENST00000596842 M0R2C6 588 aa17.76■□□□□ 0.43
UPF1-204ENST00000596842 HMGB1P09429 215 aaKnown RBP17.76■□□□□ 0.43
UPF1-204ENST00000596842 GOLGA8FQ08AF8 430 aa17.76■□□□□ 0.43
UPF1-204ENST00000596842 GOLGA8DPQ0D2H9 430 aa17.76■□□□□ 0.43
UPF1-204ENST00000596842 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.76■□□□□ 0.43
UPF1-204ENST00000596842 AIFM3Q96NN9 605 aa17.76■□□□□ 0.43
UPF1-204ENST00000596842 TOMM22Q9NS69 142 aa17.76■□□□□ 0.43
UPF1-204ENST00000596842 CEP126Q9P2H0 1117 aa17.76■□□□□ 0.43
UPF1-204ENST00000596842 RCOR1Q9UKL0 485 aa17.76■□□□□ 0.43
UPF1-204ENST00000596842 MAST3O60307 1309 aa17.75■□□□□ 0.43
UPF1-204ENST00000596842 ERBB3P21860 1342 aa17.75■□□□□ 0.43
UPF1-204ENST00000596842 PAXBP1Q9Y5B6 917 aa17.75■□□□□ 0.43
UPF1-204ENST00000596842 ADORA1P30542 326 aa17.75■□□□□ 0.43
UPF1-204ENST00000596842 ADD1P35611 737 aaKnown RBP17.75■□□□□ 0.43
UPF1-204ENST00000596842 SNW1Q13573 536 aaKnown RBP17.75■□□□□ 0.43
UPF1-204ENST00000596842 OSBP2Q969R2 916 aa17.75■□□□□ 0.43
UPF1-204ENST00000596842 XPO4Q9C0E2 1151 aaKnown RBP17.75■□□□□ 0.43
UPF1-204ENST00000596842 LRRC37A3O60309 1634 aa17.75■□□□□ 0.43
UPF1-204ENST00000596842 CTAGE5O15320 804 aa17.75■□□□□ 0.43
UPF1-204ENST00000596842 SYT10Q6XYQ8 523 aa17.75■□□□□ 0.43
UPF1-204ENST00000596842 DHX40Q8IX18 779 aaKnown RBP17.75■□□□□ 0.43
UPF1-204ENST00000596842 RGPD2P0DJD1 1756 aa17.74■□□□□ 0.43
UPF1-204ENST00000596842 UTYO14607 1347 aa17.74■□□□□ 0.43
UPF1-204ENST00000596842 SLC3A2P08195 630 aaKnown RBP17.74■□□□□ 0.43
UPF1-204ENST00000596842 PRC1O43663 620 aa17.74■□□□□ 0.43
UPF1-204ENST00000596842 IRX3P78415 501 aaPredicted RBP17.74■□□□□ 0.43
UPF1-204ENST00000596842 TSGA10IPQ3SY00 556 aa17.74■□□□□ 0.43
UPF1-204ENST00000596842 KAT6BQ8WYB5 2073 aa17.74■□□□□ 0.43
UPF1-204ENST00000596842 KIF18AQ8NI77 898 aa17.74■□□□□ 0.43
UPF1-204ENST00000596842 ANKRD7Q92527 254 aa17.74■□□□□ 0.43
UPF1-204ENST00000596842 CWC25Q9NXE8 425 aaPredicted RBP17.74■□□□□ 0.43
UPF1-204ENST00000596842 CYP27B1O15528 508 aa17.73■□□□□ 0.43
UPF1-204ENST00000596842 RNF113AO15541 343 aaKnown RBP17.73■□□□□ 0.43
UPF1-204ENST00000596842 CCDC57Q2TAC2 916 aa17.73■□□□□ 0.43
UPF1-204ENST00000596842 NAA16Q6N069 864 aaPredicted RBP17.73■□□□□ 0.43
UPF1-204ENST00000596842 TRIM34Q9BYJ4 488 aa17.73■□□□□ 0.43
UPF1-204ENST00000596842 SFPQP23246 707 aaKnown RBP eCLIP17.73■□□□□ 0.43
UPF1-204ENST00000596842 SPECC1Q5M775 1068 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms