RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 ZNF333Q96JL9 665 aa14.39□□□□□ -0.11
ZNF540-209ENST00000590588 PLEKHF1Q96S99 279 aa14.39□□□□□ -0.11
ZNF540-209ENST00000590588 RBBP6Q7Z6E9 1792 aaKnown RBP14.39□□□□□ -0.11
ZNF540-209ENST00000590588 ATP5J2-PTCD1G3V325 749 aa14.38□□□□□ -0.11
ZNF540-209ENST00000590588 IGF2BP3O00425 579 aaKnown RBP eCLIP14.38□□□□□ -0.11
ZNF540-209ENST00000590588 HSP90B1P14625 803 aaKnown RBP14.38□□□□□ -0.11
ZNF540-209ENST00000590588 ATP2B4P23634 1241 aa14.38□□□□□ -0.11
ZNF540-209ENST00000590588 ARHGEF6Q15052 776 aa14.38□□□□□ -0.11
ZNF540-209ENST00000590588 APOBEC3FQ8IUX4 373 aaKnown RBP14.38□□□□□ -0.11
ZNF540-209ENST00000590588 PNNQ9H307 717 aaKnown RBP14.38□□□□□ -0.11
ZNF540-209ENST00000590588 SEC31BQ9NQW1 1179 aa14.38□□□□□ -0.11
ZNF540-209ENST00000590588 KCNA4P22459 653 aa14.37□□□□□ -0.11
ZNF540-209ENST00000590588 TRIM28Q13263 835 aaKnown RBP14.37□□□□□ -0.11
ZNF540-209ENST00000590588 CRHR2Q13324 411 aa14.37□□□□□ -0.11
ZNF540-209ENST00000590588 MAP3K11Q16584 847 aa14.37□□□□□ -0.11
ZNF540-209ENST00000590588 CHRDL2Q6WN34 429 aa14.37□□□□□ -0.11
ZNF540-209ENST00000590588 XDHP47989 1333 aa14.37□□□□□ -0.11
ZNF540-209ENST00000590588 MYO3BQ8WXR4 1341 aa14.37□□□□□ -0.11
ZNF540-209ENST00000590588 UNCXA6NJT0 531 aa14.36□□□□□ -0.11
ZNF540-209ENST00000590588 PPP1R12BO60237 982 aaPredicted RBP14.36□□□□□ -0.11
ZNF540-209ENST00000590588 SLC9C1Q4G0N8 1177 aa14.36□□□□□ -0.11
ZNF540-209ENST00000590588 WNK4Q96J92 1243 aa14.36□□□□□ -0.11
ZNF540-209ENST00000590588 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.36□□□□□ -0.11
ZNF540-209ENST00000590588 SASH1O94885 1247 aa14.35□□□□□ -0.11
ZNF540-209ENST00000590588 CCDC152Q4G0S7 254 aa14.35□□□□□ -0.11
ZNF540-209ENST00000590588 DACT2Q5SW24 774 aa14.35□□□□□ -0.11
ZNF540-209ENST00000590588 STRIP1Q5VSL9 837 aa14.35□□□□□ -0.11
ZNF540-209ENST00000590588 ZBTB38Q8NAP3 1195 aaPredicted RBP14.35□□□□□ -0.11
ZNF540-209ENST00000590588 MXD3Q9BW11 206 aa14.35□□□□□ -0.11
ZNF540-209ENST00000590588 RBM27Q9P2N5 1060 aaKnown RBP14.35□□□□□ -0.11
ZNF540-209ENST00000590588 COL4A1P02462 1669 aa14.35□□□□□ -0.11
ZNF540-209ENST00000590588 MAPK8IP3Q9UPT6 1336 aa14.35□□□□□ -0.11
ZNF540-209ENST00000590588 DLG5Q8TDM6 1919 aa14.35□□□□□ -0.11
ZNF540-209ENST00000590588 ANKRD18AQ8IVF6 992 aa14.34□□□□□ -0.11
ZNF540-209ENST00000590588 FBXW7Q969H0 707 aa14.34□□□□□ -0.11
ZNF540-209ENST00000590588 DEFB129Q9H1M3 183 aa14.34□□□□□ -0.11
ZNF540-209ENST00000590588 FZD1Q9UP38 647 aa14.34□□□□□ -0.11
ZNF540-209ENST00000590588 TRIOBPQ9H2D6 2365 aa14.34□□□□□ -0.11
ZNF540-209ENST00000590588 A0A0C4DFX4 3053 aa14.34□□□□□ -0.11
ZNF540-209ENST00000590588 DPF3Q92784 378 aa14.33□□□□□ -0.12
ZNF540-209ENST00000590588 CLMNQ96JQ2 1002 aa14.33□□□□□ -0.12
ZNF540-209ENST00000590588 CHPF2Q9P2E5 772 aa14.33□□□□□ -0.12
ZNF540-209ENST00000590588 PTCH2Q9Y6C5 1203 aa14.33□□□□□ -0.12
ZNF540-209ENST00000590588 PSME4Q14997 1843 aa14.33□□□□□ -0.12
ZNF540-209ENST00000590588 TESPA1A2RU30 521 aaPredicted RBP14.32□□□□□ -0.12
ZNF540-209ENST00000590588 RIPK4P57078 832 aa14.32□□□□□ -0.12
ZNF540-209ENST00000590588 CAP1Q01518 475 aa14.32□□□□□ -0.12
ZNF540-209ENST00000590588 SUPT20HL1Q3ZLR7 823 aa14.32□□□□□ -0.12
ZNF540-209ENST00000590588 TTLL5Q6EMB2 1281 aa14.32□□□□□ -0.12
ZNF540-209ENST00000590588 PTPN18Q99952 460 aa14.32□□□□□ -0.12
ZNF540-209ENST00000590588 COA1Q9GZY4 146 aa14.32□□□□□ -0.12
ZNF540-209ENST00000590588 DBF4Q9UBU7 674 aaPredicted RBP14.32□□□□□ -0.12
ZNF540-209ENST00000590588 COL6A3P12111 3177 aa14.31□□□□□ -0.12
ZNF540-209ENST00000590588 RANBP2P49792 3224 aaKnown RBP14.31□□□□□ -0.12
ZNF540-209ENST00000590588 PDE8AO60658 829 aa14.31□□□□□ -0.12
ZNF540-209ENST00000590588 MAPK8IP2Q13387 824 aaPredicted RBP14.31□□□□□ -0.12
ZNF540-209ENST00000590588 ZBED3Q96IU2 234 aaPredicted RBP14.31□□□□□ -0.12
ZNF540-209ENST00000590588 PPP2R3BQ9Y5P8 575 aa14.31□□□□□ -0.12
ZNF540-209ENST00000590588 MED23Q9ULK4 1368 aa14.31□□□□□ -0.12
ZNF540-209ENST00000590588 COL1A1P02452 1464 aaPredicted RBP14.31□□□□□ -0.12
ZNF540-209ENST00000590588 MYCP01106 439 aaPredicted RBP14.3□□□□□ -0.12
ZNF540-209ENST00000590588 IREB2P48200 963 aaKnown RBP14.3□□□□□ -0.12
ZNF540-209ENST00000590588 HDGFL1Q5TGJ6 251 aa14.3□□□□□ -0.12
ZNF540-209ENST00000590588 KIAA0825Q8IV33 1275 aa14.3□□□□□ -0.12
ZNF540-209ENST00000590588 ZFYVE28Q9HCC9 887 aa14.3□□□□□ -0.12
ZNF540-209ENST00000590588 HYPKQ9NX55 129 aa14.3□□□□□ -0.12
ZNF540-209ENST00000590588 WTIPA6NIX2 430 aaPredicted RBP14.29□□□□□ -0.12
ZNF540-209ENST00000590588 MNX1P50219 401 aaPredicted RBP14.29□□□□□ -0.12
ZNF540-209ENST00000590588 DLGAP5Q15398 846 aa14.29□□□□□ -0.12
ZNF540-209ENST00000590588 RIC3Q7Z5B4 369 aa14.29□□□□□ -0.12
ZNF540-209ENST00000590588 ANKRD13AQ8IZ07 590 aa14.29□□□□□ -0.12
ZNF540-209ENST00000590588 CCDC85AQ96PX6 553 aaPredicted RBP14.29□□□□□ -0.12
ZNF540-209ENST00000590588 CDC5LQ99459 802 aaKnown RBP14.29□□□□□ -0.12
ZNF540-209ENST00000590588 CEP290O15078 2479 aa14.29□□□□□ -0.12
ZNF540-209ENST00000590588 PCCAP05165 728 aaPredicted RBP14.28□□□□□ -0.12
ZNF540-209ENST00000590588 GJA5P36382 358 aa14.28□□□□□ -0.12
ZNF540-209ENST00000590588 CCT4P50991 539 aaKnown RBP14.28□□□□□ -0.12
ZNF540-209ENST00000590588 LMOD3Q0VAK6 560 aa14.28□□□□□ -0.12
ZNF540-209ENST00000590588 KRT24Q2M2I5 525 aa14.28□□□□□ -0.12
ZNF540-209ENST00000590588 NCBP3Q53F19 620 aaKnown RBP14.28□□□□□ -0.12
ZNF540-209ENST00000590588 BSDC1Q9NW68 430 aaPredicted RBP14.28□□□□□ -0.12
ZNF540-209ENST00000590588 MINPP1Q9UNW1 487 aa14.28□□□□□ -0.12
ZNF540-209ENST00000590588 CHL1O00533 1208 aa14.27□□□□□ -0.13
ZNF540-209ENST00000590588 MYO1BO43795 1136 aa14.27□□□□□ -0.13
ZNF540-209ENST00000590588 USP2O75604 605 aaPredicted RBP14.27□□□□□ -0.13
ZNF540-209ENST00000590588 HOXB7P09629 217 aa14.27□□□□□ -0.13
ZNF540-209ENST00000590588 TAF1CQ15572 869 aaPredicted RBP14.27□□□□□ -0.13
ZNF540-209ENST00000590588 MTMR14Q8NCE2 650 aa14.27□□□□□ -0.13
ZNF540-209ENST00000590588 CCDC191Q8NCU4 936 aa14.27□□□□□ -0.13
ZNF540-209ENST00000590588 CCER1Q8TC90 406 aaPredicted RBP14.27□□□□□ -0.13
ZNF540-209ENST00000590588 SH3TC2Q8TF17 1288 aa14.27□□□□□ -0.13
ZNF540-209ENST00000590588 HTATIP2Q9BUP3 242 aa14.27□□□□□ -0.13
ZNF540-209ENST00000590588 PRO3102Q9H379 93 aa14.27□□□□□ -0.13
ZNF540-209ENST00000590588 NR2E3Q9Y5X4 410 aa14.27□□□□□ -0.13
ZNF540-209ENST00000590588 KIF22Q14807 665 aa14.26□□□□□ -0.13
ZNF540-209ENST00000590588 NBPF12Q5TAG4 269 aaPredicted RBP14.26□□□□□ -0.13
ZNF540-209ENST00000590588 NKX2-3Q8TAU0 364 aa14.26□□□□□ -0.13
ZNF540-209ENST00000590588 MS4A4AQ96JQ5 239 aa14.26□□□□□ -0.13
ZNF540-209ENST00000590588 LEMD3Q9Y2U8 911 aa14.26□□□□□ -0.13
ZNF540-209ENST00000590588 ZNF804BA4D1E1 1349 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms